| Clone Name | rbasd27o07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475623.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 669 Score = 488 bits (246), Expect = e-134 Identities = 400/450 (88%), Gaps = 1/450 (0%) Strand = Plus / Minus Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagcggcattttca 341 |||||||| ||||||| |||||||||||||||||||| || |||||||| | |||| Sbjct: 656 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagcatgaccttca 597 Query: 342 gcaaaagctcggatgttcttcttggcatctttgttgcatttggtgaaccccacgatgttt 401 || | ||||| |||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 596 aagtaaccccggatattcttcttggcatctttgttgcatctggtgaacccaacaatgttt 537 Query: 402 gcaaggcttagagtcaagcaaactccaacaacaagaaggtaatcagcttcaagtctaatg 461 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 536 gcaaggcttagagtcaagcaaactccaacaacaagaaggtagtcagcttcaagtctgata 477 Query: 462 agtgaaaatatcgcaagaatgatccatgcagcagcgttcaagtaaagagtccaccagaac 521 |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 476 agtgaaaatatcccaagaatgatccatgcagcagcagtcaagtaaagagtccaccagaac 417 Query: 522 agccatgagtcttttttgttcatccgagcgagagactccccgtcgaggcactcgaacttc 581 ||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||| |||||| Sbjct: 416 agccacgagtcctttttgttcatccgagcaagagcctccccatcgaggcactcaaacttc 357 Query: 582 cacacactgttaccattcgtcgtcaatctcattccaccaacgaagcccgaccagtatcct 641 ||||| ||||| || |||||||| |||||||||||||| || | |||||||| |||||| Sbjct: 356 cacacgctgttgcc-ctcgtcgtcgatctcattccaccaccgcatcccgaccaatatcct 298 Query: 642 tccgctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaa 701 || || ||||||||||||||||||||||| ||||| || |||| |||||||||||| || Sbjct: 297 gccactcacattcttcaccacccagaagtcgagcgccgccaggaacacggtgatgacgaa 238 Query: 702 gatgatgacgaagctcttcacgaagagcga 731 ||||||||||||||||||||||||||||| Sbjct: 237 tatgatgacgaagctcttcacgaagagcga 208
>dbj|AK103137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120E14, full insert sequence Length = 1085 Score = 488 bits (246), Expect = e-134 Identities = 400/450 (88%), Gaps = 1/450 (0%) Strand = Plus / Minus Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagcggcattttca 341 |||||||| ||||||| |||||||||||||||||||| || |||||||| | |||| Sbjct: 698 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagcatgaccttca 639 Query: 342 gcaaaagctcggatgttcttcttggcatctttgttgcatttggtgaaccccacgatgttt 401 || | ||||| |||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 638 aagtaaccccggatattcttcttggcatctttgttgcatctggtgaacccaacaatgttt 579 Query: 402 gcaaggcttagagtcaagcaaactccaacaacaagaaggtaatcagcttcaagtctaatg 461 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 578 gcaaggcttagagtcaagcaaactccaacaacaagaaggtagtcagcttcaagtctgata 519 Query: 462 agtgaaaatatcgcaagaatgatccatgcagcagcgttcaagtaaagagtccaccagaac 521 |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 518 agtgaaaatatcccaagaatgatccatgcagcagcagtcaagtaaagagtccaccagaac 459 Query: 522 agccatgagtcttttttgttcatccgagcgagagactccccgtcgaggcactcgaacttc 581 ||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||| |||||| Sbjct: 458 agccacgagtcctttttgttcatccgagcaagagcctccccatcgaggcactcaaacttc 399 Query: 582 cacacactgttaccattcgtcgtcaatctcattccaccaacgaagcccgaccagtatcct 641 ||||| ||||| || |||||||| |||||||||||||| || | |||||||| |||||| Sbjct: 398 cacacgctgttgcc-ctcgtcgtcgatctcattccaccaccgcatcccgaccaatatcct 340 Query: 642 tccgctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaa 701 || || ||||||||||||||||||||||| ||||| || |||| |||||||||||| || Sbjct: 339 gccactcacattcttcaccacccagaagtcgagcgccgccaggaacacggtgatgacgaa 280 Query: 702 gatgatgacgaagctcttcacgaagagcga 731 ||||||||||||||||||||||||||||| Sbjct: 279 tatgatgacgaagctcttcacgaagagcga 250
>gb|AY105506.1| Zea mays PCO099200 mRNA sequence Length = 795 Score = 418 bits (211), Expect = e-113 Identities = 334/375 (89%), Gaps = 1/375 (0%) Strand = Plus / Minus Query: 360 ttcttggcatctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaag 419 |||||||||||||||||||| | |||||| || || |||||||||| ||||||| ||||| Sbjct: 609 ttcttggcatctttgttgcactnggtgaatccaacaatgtttgcaatgcttagantcaag 550 Query: 420 caaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaaga 479 ||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||| Sbjct: 549 caaactccaacaacaagaaggtaatcagcctcaagcntgatgagtgaaaatataccaaga 490 Query: 480 atgatccatgcagcagcgttcaagtaaagagtccaccagaacagccatgagtcttttttg 539 | ||||||||||||||| ||||||||||||||||||||||||||||||| || || ||| Sbjct: 489 acgatccatgcagcagcagtcaagtaaagagtccaccagaacagccatgaatccttnttg 430 Query: 540 ttcatccgagcgagagactccccgtcgaggcactcgaacttccacacactgttaccattc 599 ||||||||||||||||||||||| || ||||| || ||||||||||||||||| || || Sbjct: 429 ttcatccgagcgagagactccccatcaaggcattcaaacttccacacactgtttcc-gtc 371 Query: 600 gtcgtcaatctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcac 659 || || |||||||||||||| || |||||||| |||||||| || ||||| |||||||| Sbjct: 370 atcatcgatctcattccaccaccgcagcccgactagtatcctgccactgacgttcttcac 311 Query: 660 cacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatgatgacgaagctctt 719 |||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct: 310 cacccagaagtcaagcgctgcgaggagcaccgtgatcacgaagatgatgacgaagctctt 251 Query: 720 cacgaagagcgagaa 734 ||| ||||||||||| Sbjct: 250 cacaaagagcgagaa 236
>dbj|AK121761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090D14, full insert sequence Length = 1086 Score = 319 bits (161), Expect = 7e-84 Identities = 300/345 (86%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 360 ttcttggcatctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaag 419 |||||||||||||||||||| |||||||| || || |||||||| | ||| ||| ||||| Sbjct: 619 ttcttggcatctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaag 560 Query: 420 caaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaaga 479 ||||||||||||||||||||||||||||| | |||||| |||||||| |||||| ||||| Sbjct: 559 caaactccaacaacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaaga 500 Query: 480 atgatccatgcagcagcgttcaagtaaagagtccaccagaacagccatgagtcttttttg 539 | |||||||||||||| ||||||| |||||||||||||||||||||||||| || ||| Sbjct: 499 acaatccatgcagcagcagtcaagtacagagtccaccagaacagccatgagtccttcttg 440 Query: 540 ttcatccgagcgagagactccccgtcgaggcactcgaacttccacacactgttaccattc 599 ||||||| ||| |||||||| || || |||||||| ||||||||||| || || || || Sbjct: 439 ttcatcctagcaagagactctccatcaaggcactcaaacttccacacgctattgcc-ctc 381 Query: 600 gtcgtcaatctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcac 659 || || |||||||||||||| || ||||| |||| |||||| || ||||| ||||| || Sbjct: 380 atcatcgatctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgac 321 Query: 660 cacccagaagtcaagcgcggcaaggagcacggtgatgacaaagat 704 ||||||||||||||| || || ||||||||||||||||||||||| Sbjct: 320 cacccagaagtcaagtgctgccaggagcacggtgatgacaaagat 276
>dbj|AK064784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B15, full insert sequence Length = 987 Score = 319 bits (161), Expect = 7e-84 Identities = 300/345 (86%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 360 ttcttggcatctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaag 419 |||||||||||||||||||| |||||||| || || |||||||| | ||| ||| ||||| Sbjct: 527 ttcttggcatctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaag 468 Query: 420 caaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaaga 479 ||||||||||||||||||||||||||||| | |||||| |||||||| |||||| ||||| Sbjct: 467 caaactccaacaacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaaga 408 Query: 480 atgatccatgcagcagcgttcaagtaaagagtccaccagaacagccatgagtcttttttg 539 | |||||||||||||| ||||||| |||||||||||||||||||||||||| || ||| Sbjct: 407 acaatccatgcagcagcagtcaagtacagagtccaccagaacagccatgagtccttcttg 348 Query: 540 ttcatccgagcgagagactccccgtcgaggcactcgaacttccacacactgttaccattc 599 ||||||| ||| |||||||| || || |||||||| ||||||||||| || || || || Sbjct: 347 ttcatcctagcaagagactctccatcaaggcactcaaacttccacacgctattgcc-ctc 289 Query: 600 gtcgtcaatctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcac 659 || || |||||||||||||| || ||||| |||| |||||| || ||||| ||||| || Sbjct: 288 atcatcgatctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgac 229 Query: 660 cacccagaagtcaagcgcggcaaggagcacggtgatgacaaagat 704 ||||||||||||||| || || ||||||||||||||||||||||| Sbjct: 228 cacccagaagtcaagtgctgccaggagcacggtgatgacaaagat 184
>dbj|AK060262.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-A04, full insert sequence Length = 876 Score = 242 bits (122), Expect = 1e-60 Identities = 200/226 (88%) Strand = Plus / Minus Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagcggcattttca 341 |||||||| ||||||| |||||||||||||||||||| || |||||||| | |||| Sbjct: 226 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagcatgaccttca 167 Query: 342 gcaaaagctcggatgttcttcttggcatctttgttgcatttggtgaaccccacgatgttt 401 || | ||||| |||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 166 aagtaaccccggatattcttcttggcatctttgttgcatctggtgaacccaacaatgttt 107 Query: 402 gcaaggcttagagtcaagcaaactccaacaacaagaaggtaatcagcttcaagtctaatg 461 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 106 gcaaggcttagagtcaagcaaactccaacaacaagaaggtagtcagcttcaagtctgata 47 Query: 462 agtgaaaatatcgcaagaatgatccatgcagcagcgttcaagtaaa 507 |||||||||||| |||||||||||||||||||||| ||||||||| Sbjct: 46 agtgaaaatatcccaagaatgatccatgcagcagcagtcaagtaaa 1
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 196 bits (99), Expect = 7e-47 Identities = 120/127 (94%) Strand = Plus / Minus Query: 370 ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429 ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 60405 ctttgttgcatctggtgaacccaacaatgtttgcaaggcttagagtcaagcaaactccaa 60346 Query: 430 caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489 ||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||| Sbjct: 60345 caacaagaaggtagtcagcttcaagtctgataagtgaaaatatcccaagaatgatccatg 60286 Query: 490 cagcagc 496 ||||||| Sbjct: 60285 cagcagc 60279 Score = 180 bits (91), Expect = 4e-42 Identities = 155/175 (88%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 557 ctccccgtcgaggcactcgaacttccacacactgttaccattcgtcgtcaatctcattcc 616 |||||| ||||||||||| ||||||||||| ||||| || | ||||||| |||||||||| Sbjct: 59184 ctccccatcgaggcactcaaacttccacacgctgttgccct-cgtcgtcgatctcattcc 59126 Query: 617 accaacgaagcccgaccagtatccttccgctgacattcttcaccacccagaagtcaagcg 676 |||| || | |||||||| |||||| || || ||||||||||||||||||||||| |||| Sbjct: 59125 accaccgcatcccgaccaatatcctgccactcacattcttcaccacccagaagtcgagcg 59066 Query: 677 cggcaaggagcacggtgatgacaaagatgatgacgaagctcttcacgaagagcga 731 | || |||| |||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 59065 ccgccaggaacacggtgatgacgaatatgatgacgaagctcttcacgaagagcga 59011 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 499 tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagag 555 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 59329 tcaagtaaagagtccaccagaacagccacgagtcctttttgttcatccgagcaagag 59273 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagc 331 |||||||| ||||||| |||||||||||||||||||| || |||||||| Sbjct: 60989 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagc 60940
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 196 bits (99), Expect = 7e-47 Identities = 120/127 (94%) Strand = Plus / Minus Query: 370 ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429 ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 3430923 ctttgttgcatctggtgaacccaacaatgtttgcaaggcttagagtcaagcaaactccaa 3430864 Query: 430 caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489 ||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||| Sbjct: 3430863 caacaagaaggtagtcagcttcaagtctgataagtgaaaatatcccaagaatgatccatg 3430804 Query: 490 cagcagc 496 ||||||| Sbjct: 3430803 cagcagc 3430797 Score = 180 bits (91), Expect = 4e-42 Identities = 155/175 (88%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 557 ctccccgtcgaggcactcgaacttccacacactgttaccattcgtcgtcaatctcattcc 616 |||||| ||||||||||| ||||||||||| ||||| || | ||||||| |||||||||| Sbjct: 3429702 ctccccatcgaggcactcaaacttccacacgctgttgccct-cgtcgtcgatctcattcc 3429644 Query: 617 accaacgaagcccgaccagtatccttccgctgacattcttcaccacccagaagtcaagcg 676 |||| || | |||||||| |||||| || || ||||||||||||||||||||||| |||| Sbjct: 3429643 accaccgcatcccgaccaatatcctgccactcacattcttcaccacccagaagtcgagcg 3429584 Query: 677 cggcaaggagcacggtgatgacaaagatgatgacgaagctcttcacgaagagcga 731 | || |||| |||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 3429583 ccgccaggaacacggtgatgacgaatatgatgacgaagctcttcacgaagagcga 3429529 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 499 tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagag 555 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 3429847 tcaagtaaagagtccaccagaacagccacgagtcctttttgttcatccgagcaagag 3429791 Score = 60.0 bits (30), Expect = 1e-05 Identities = 45/50 (90%) Strand = Plus / Minus Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagc 331 |||||||| ||||||| |||||||||||||||||||| || |||||||| Sbjct: 3431507 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagc 3431458
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 133 bits (67), Expect = 9e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 370 ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429 |||||||||| |||||||| || || |||||||| | ||| ||| ||||||||||||||| Sbjct: 12835152 ctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaagcaaactccaa 12835093 Query: 430 caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489 ||||||||||||||||||| | |||||| |||||||| |||||| |||||| ||||||| Sbjct: 12835092 caacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaagaacaatccatg 12835033 Query: 490 cagcagc 496 ||||||| Sbjct: 12835032 cagcagc 12835026 Score = 107 bits (54), Expect = 5e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 607 atctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcaccacccag 666 |||||||||||||| || ||||| |||| |||||| || ||||| ||||| ||||||||| Sbjct: 12832668 atctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgaccacccag 12832609 Query: 667 aagtcaagcgcggcaaggagcacggtgatgacaaagat 704 |||||||| || || ||||||||||||||||||||||| Sbjct: 12832608 aagtcaagtgctgccaggagcacggtgatgacaaagat 12832571 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 499 tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagagact 558 ||||||| |||||||||||||||||||||||||| || |||||||||| ||| ||||||| Sbjct: 12832856 tcaagtacagagtccaccagaacagccatgagtccttcttgttcatcctagcaagagact 12832797
>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489E06 Length = 140229 Score = 133 bits (67), Expect = 9e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 370 ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429 |||||||||| |||||||| || || |||||||| | ||| ||| ||||||||||||||| Sbjct: 115551 ctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaagcaaactccaa 115492 Query: 430 caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489 ||||||||||||||||||| | |||||| |||||||| |||||| |||||| ||||||| Sbjct: 115491 caacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaagaacaatccatg 115432 Query: 490 cagcagc 496 ||||||| Sbjct: 115431 cagcagc 115425 Score = 107 bits (54), Expect = 5e-20 Identities = 87/98 (88%) Strand = Plus / Minus Query: 607 atctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcaccacccag 666 |||||||||||||| || ||||| |||| |||||| || ||||| ||||| ||||||||| Sbjct: 113067 atctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgaccacccag 113008 Query: 667 aagtcaagcgcggcaaggagcacggtgatgacaaagat 704 |||||||| || || ||||||||||||||||||||||| Sbjct: 113007 aagtcaagtgctgccaggagcacggtgatgacaaagat 112970 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 499 tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagagact 558 ||||||| |||||||||||||||||||||||||| || |||||||||| ||| ||||||| Sbjct: 113255 tcaagtacagagtccaccagaacagccatgagtccttcttgttcatcctagcaagagact 113196
>ref|NM_100803.3| Arabidopsis thaliana unknown protein AT1G09330 mRNA, complete cds Length = 990 Score = 99.6 bits (50), Expect = 1e-17 Identities = 124/146 (84%), Gaps = 2/146 (1%) Strand = Plus / Minus Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475 ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | | Sbjct: 614 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 555 Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534 ||| || | ||||||||| || | |||| ||||| ||||||||||| ||||||||||||| Sbjct: 554 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 496 Query: 535 ttttgttcatccgagcgagagactcc 560 | |||||||||||||| | ||||||| Sbjct: 495 tcttgttcatccgagccaaagactcc 470 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705 ||||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| Sbjct: 385 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 326 Query: 706 atgacgaagct 716 ||||| ||||| Sbjct: 325 atgacaaagct 315
>emb|BX818022.1|CNS0AAQD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL57ZA01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 99.6 bits (50), Expect = 1e-17 Identities = 124/146 (84%), Gaps = 2/146 (1%) Strand = Plus / Minus Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475 ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | | Sbjct: 614 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 555 Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534 ||| || | ||||||||| || | |||| ||||| ||||||||||| ||||||||||||| Sbjct: 554 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 496 Query: 535 ttttgttcatccgagcgagagactcc 560 | |||||||||||||| | ||||||| Sbjct: 495 tcttgttcatccgagccaaagactcc 470 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705 ||||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| Sbjct: 385 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 326 Query: 706 atgacgaagct 716 ||||| ||||| Sbjct: 325 atgacaaagct 315
>gb|BT004772.1| Arabidopsis thaliana At1g09330 gene, complete cds Length = 561 Score = 99.6 bits (50), Expect = 1e-17 Identities = 124/146 (84%), Gaps = 2/146 (1%) Strand = Plus / Minus Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475 ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | | Sbjct: 426 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 367 Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534 ||| || | ||||||||| || | |||| ||||| ||||||||||| ||||||||||||| Sbjct: 366 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 308 Query: 535 ttttgttcatccgagcgagagactcc 560 | |||||||||||||| | ||||||| Sbjct: 307 tcttgttcatccgagccaaagactcc 282 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705 ||||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| Sbjct: 197 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 138 Query: 706 atgacgaagct 716 ||||| ||||| Sbjct: 137 atgacaaagct 127
>gb|AY085379.1| Arabidopsis thaliana clone 14886 mRNA, complete sequence Length = 935 Score = 99.6 bits (50), Expect = 1e-17 Identities = 124/146 (84%), Gaps = 2/146 (1%) Strand = Plus / Minus Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475 ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | | Sbjct: 584 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 525 Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534 ||| || | ||||||||| || | |||| ||||| ||||||||||| ||||||||||||| Sbjct: 524 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 466 Query: 535 ttttgttcatccgagcgagagactcc 560 | |||||||||||||| | ||||||| Sbjct: 465 tcttgttcatccgagccaaagactcc 440 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705 ||||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| Sbjct: 355 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 296 Query: 706 atgacgaagct 716 ||||| ||||| Sbjct: 295 atgacaaagct 285
>emb|X54689.1|TAAGCNN17 Wheat alpha-gliadin pseudogene (clone CNNE17) Length = 3566 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 226 ggtaacacagttgtatgtaattttgggcctctgtgtaatctggacttcagatgccgaatg 285 |||||| | |||| |||||| |||||||||||||||||||||||||||||| | ||||| Sbjct: 3360 ggtaaccctgttgcatgtaaatttgggcctctgtgtaatctggacttcagacactgaatg 3419 Query: 286 ctgactgcagggatgatg 303 | || | ||||||||||| Sbjct: 3420 ccgatttcagggatgatg 3437
>emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35) Length = 3573 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 226 ggtaacacagttgtatgtaattttgggcctctgtgtaatctggacttcagatgccgaatg 285 |||||| | |||| |||||| |||||||||||||||||||||||||||||| | ||||| Sbjct: 3366 ggtaaccctgttgcatgtaaatttgggcctctgtgtaatctggacttcagacactgaatg 3425 Query: 286 ctgactgcagggatgatg 303 | || | ||||||||||| Sbjct: 3426 ccgatttcagggatgatg 3443 Score = 42.1 bits (21), Expect = 2.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 48 ccaccagngtacaagagaagaagaaagtatgctctttagtacaggagaaagtgtaaactt 107 |||||| |||||||||| | || ||||||||||||||| | |||||||||| || || Sbjct: 3173 ccaccatggtacaagagatgctgagagtatgctctttagtgtatgagaaagtgtgaaatt 3232 Query: 108 acctaggg 115 | |||||| Sbjct: 3233 atctaggg 3240
>emb|X54517.1|TAAGCNN16 Wheat alpha-gliadin pseudogene (clone CNN16) Length = 3581 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 226 ggtaacacagttgtatgtaattttgggcctctgtgtaatctggacttcagatgccgaatg 285 |||||| | |||| |||||| |||||||||||||||||||||||||||||| | ||||| Sbjct: 3375 ggtaaccctgttgcatgtaaatttgggcctctgtgtaatctggacttcagacactgaatg 3434 Query: 286 ctgactgcagggatgatg 303 | || | ||||||||||| Sbjct: 3435 ccgatttcagggatgatg 3452
>gb|AC006416.2|T31J12 Arabidopsis thaliana chromosome 1 BAC T31J12 sequence, complete sequence Length = 16549 Score = 71.9 bits (36), Expect = 3e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 503 gtaaagagtccaccagaacagccatgagtcttttttgttcatccgagc 550 |||||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct: 12002 gtaaagtgtccaccagaaaagccatgagtctttcttgttcatccgagc 12049 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705 ||||||||||| ||||||||||||||||| || ||||| || || |||| ||||||||| Sbjct: 12265 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 12324 Query: 706 atgacgaagct 716 ||||| ||||| Sbjct: 12325 atgacaaagct 12335 Score = 52.0 bits (26), Expect = 0.003 Identities = 65/78 (83%) Strand = Plus / Plus Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475 ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | | Sbjct: 11244 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 11303 Query: 476 aagaatgatccatgcagc 493 ||| || | ||||||||| Sbjct: 11304 aaggataaaccatgcagc 11321
>gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence Length = 89397 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 370 ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429 |||| ||||||||||| || || || || ||||||| ||| || |||| |||||||| | Sbjct: 57169 cttttttgcatttggtaaaaccaacaatatttgcaatgctaagggtcagacaaactccta 57228 Query: 430 caacaagaaggtaatcagcttcaagtctaatgagtgaaaatat 472 ||||||| || |||||||||| ||| || |||||||| ||||| Sbjct: 57229 caacaaggagataatcagcttgaagccttatgagtgagaatat 57271 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 510 gtccaccagaacagccatgagtcttttttgttcatccgagc 550 ||||||||||| ||||||||||| || |||||||||||||| Sbjct: 57951 gtccaccagaaaagccatgagtccttcttgttcatccgagc 57991
>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete sequence Length = 193363 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 519 aacagccatgagtcttttttgtt 541 ||||||||||||||||||||||| Sbjct: 135555 aacagccatgagtcttttttgtt 135533
>dbj|AB222076.1| Lilium hybrid division I LHbHLH2 mRNA for bHLH transcription factor, complete cds Length = 2406 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 688 acggtgatgacaaagatgatgacgaa 713 ||||||||||||| |||||||||||| Sbjct: 866 acggtgatgacaatgatgatgacgaa 891
>emb|AL358934.19| Human DNA sequence from clone RP11-459D20 on chromosome 9 Contains a transcription factor IIA small 12 kDa subunit (GTF2A2) pseudogene, complete sequence Length = 95922 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 ttcttcttggcatctttgttg 377 ||||||||||||||||||||| Sbjct: 5402 ttcttcttggcatctttgttg 5382
>gb|AC108137.8| Homo sapiens chromosome 15, clone RP11-941F15, complete sequence Length = 177015 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 gaatgctgactgcagggatga 301 ||||||||||||||||||||| Sbjct: 78740 gaatgctgactgcagggatga 78760
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 agagtccaccagaacagccat 527 ||||||||||||||||||||| Sbjct: 3807617 agagtccaccagaacagccat 3807637
>gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map CIC06C03, complete sequence Length = 88068 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 411 agagtcaagcaaactccaacaacaa 435 ||||||||||||||||||| ||||| Sbjct: 5970 agagtcaagcaaactccaataacaa 5946
>ref|XM_217031.2| PREDICTED: Rattus norvegicus hypothetical LOC300207 (predicted) (LOC300207), mRNA Length = 435 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 510 gtccaccagaacagccatgag 530 ||||||||||||||||||||| Sbjct: 74 gtccaccagaacagccatgag 94
>gb|AC013486.12| Homo sapiens chromosome 15, clone RP11-2M12, complete sequence Length = 162060 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gaatgctgactgcagggatga 301 ||||||||||||||||||||| Sbjct: 142435 gaatgctgactgcagggatga 142415
>gb|AC154828.2| Mus musculus BAC clone RP24-549A19 from 13, complete sequence Length = 138426 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 tgatgacaaagatgatgacga 712 ||||||||||||||||||||| Sbjct: 122524 tgatgacaaagatgatgacga 122504
>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete sequence Length = 255133 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 tgatgacaaagatgatgacga 712 ||||||||||||||||||||| Sbjct: 27263 tgatgacaaagatgatgacga 27243
>emb|AL713861.10| Mouse DNA sequence from clone RP23-367H15 on chromosome X, complete sequence Length = 169838 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 ctttgacagaaggtaacacag 235 ||||||||||||||||||||| Sbjct: 75831 ctttgacagaaggtaacacag 75851
>emb|AL844898.5| Mouse DNA sequence from clone RP23-346M17 on chromosome 2, complete sequence Length = 164288 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 693 gatgacaaagatgatgacgaa 713 ||||||||||||||||||||| Sbjct: 103943 gatgacaaagatgatgacgaa 103963 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,503,041 Number of Sequences: 3902068 Number of extensions: 6503041 Number of successful extensions: 137882 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137674 Number of HSP's gapped (non-prelim): 199 length of query: 736 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 713 effective length of database: 17,143,297,704 effective search space: 12223171262952 effective search space used: 12223171262952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)