ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27o07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475623.1| Oryza sativa (japonica cultivar-group), predic... 488 e-134
2dbj|AK103137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 488 e-134
3gb|AY105506.1| Zea mays PCO099200 mRNA sequence 418 e-113
4dbj|AK121761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 7e-84
5dbj|AK064784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 7e-84
6dbj|AK060262.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
7gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome... 196 7e-47
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 196 7e-47
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
10dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D... 133 9e-28
11ref|NM_100803.3| Arabidopsis thaliana unknown protein AT1G09330 ... 100 1e-17
12emb|BX818022.1|CNS0AAQD Arabidopsis thaliana Full-length cDNA Co... 100 1e-17
13gb|BT004772.1| Arabidopsis thaliana At1g09330 gene, complete cds 100 1e-17
14gb|AY085379.1| Arabidopsis thaliana clone 14886 mRNA, complete s... 100 1e-17
15emb|X54689.1|TAAGCNN17 Wheat alpha-gliadin pseudogene (clone CNN... 76 2e-10
16emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35) 76 2e-10
17emb|X54517.1|TAAGCNN16 Wheat alpha-gliadin pseudogene (clone CNN16) 76 2e-10
18gb|AC006416.2|T31J12 Arabidopsis thaliana chromosome 1 BAC T31J1... 72 3e-09
19gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence 62 3e-06
20emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chr... 46 0.16
21dbj|AB222076.1| Lilium hybrid division I LHbHLH2 mRNA for bHLH t... 44 0.65
22emb|AL358934.19| Human DNA sequence from clone RP11-459D20 on ch... 42 2.6
23gb|AC108137.8| Homo sapiens chromosome 15, clone RP11-941F15, co... 42 2.6
24dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 42 2.6
25gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map... 42 2.6
26ref|XM_217031.2| PREDICTED: Rattus norvegicus hypothetical LOC30... 42 2.6
27gb|AC013486.12| Homo sapiens chromosome 15, clone RP11-2M12, com... 42 2.6
28gb|AC154828.2| Mus musculus BAC clone RP24-549A19 from 13, compl... 42 2.6
29emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chro... 42 2.6
30emb|AL713861.10| Mouse DNA sequence from clone RP23-367H15 on ch... 42 2.6
31emb|AL844898.5| Mouse DNA sequence from clone RP23-346M17 on chr... 42 2.6

>ref|XM_475623.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 669

 Score =  488 bits (246), Expect = e-134
 Identities = 400/450 (88%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagcggcattttca 341
           |||||||| |||||||  |||||||||||||||||||| || ||||||||   |  ||||
Sbjct: 656 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagcatgaccttca 597

                                                                       
Query: 342 gcaaaagctcggatgttcttcttggcatctttgttgcatttggtgaaccccacgatgttt 401
               || | ||||| |||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 596 aagtaaccccggatattcttcttggcatctttgttgcatctggtgaacccaacaatgttt 537

                                                                       
Query: 402 gcaaggcttagagtcaagcaaactccaacaacaagaaggtaatcagcttcaagtctaatg 461
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 536 gcaaggcttagagtcaagcaaactccaacaacaagaaggtagtcagcttcaagtctgata 477

                                                                       
Query: 462 agtgaaaatatcgcaagaatgatccatgcagcagcgttcaagtaaagagtccaccagaac 521
           |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 476 agtgaaaatatcccaagaatgatccatgcagcagcagtcaagtaaagagtccaccagaac 417

                                                                       
Query: 522 agccatgagtcttttttgttcatccgagcgagagactccccgtcgaggcactcgaacttc 581
           ||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 416 agccacgagtcctttttgttcatccgagcaagagcctccccatcgaggcactcaaacttc 357

                                                                       
Query: 582 cacacactgttaccattcgtcgtcaatctcattccaccaacgaagcccgaccagtatcct 641
           ||||| ||||| ||  |||||||| |||||||||||||| || | |||||||| ||||||
Sbjct: 356 cacacgctgttgcc-ctcgtcgtcgatctcattccaccaccgcatcccgaccaatatcct 298

                                                                       
Query: 642 tccgctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaa 701
            || || ||||||||||||||||||||||| ||||| || |||| |||||||||||| ||
Sbjct: 297 gccactcacattcttcaccacccagaagtcgagcgccgccaggaacacggtgatgacgaa 238

                                         
Query: 702 gatgatgacgaagctcttcacgaagagcga 731
            |||||||||||||||||||||||||||||
Sbjct: 237 tatgatgacgaagctcttcacgaagagcga 208



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>dbj|AK103137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120E14, full
           insert sequence
          Length = 1085

 Score =  488 bits (246), Expect = e-134
 Identities = 400/450 (88%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagcggcattttca 341
           |||||||| |||||||  |||||||||||||||||||| || ||||||||   |  ||||
Sbjct: 698 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagcatgaccttca 639

                                                                       
Query: 342 gcaaaagctcggatgttcttcttggcatctttgttgcatttggtgaaccccacgatgttt 401
               || | ||||| |||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 638 aagtaaccccggatattcttcttggcatctttgttgcatctggtgaacccaacaatgttt 579

                                                                       
Query: 402 gcaaggcttagagtcaagcaaactccaacaacaagaaggtaatcagcttcaagtctaatg 461
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 578 gcaaggcttagagtcaagcaaactccaacaacaagaaggtagtcagcttcaagtctgata 519

                                                                       
Query: 462 agtgaaaatatcgcaagaatgatccatgcagcagcgttcaagtaaagagtccaccagaac 521
           |||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 518 agtgaaaatatcccaagaatgatccatgcagcagcagtcaagtaaagagtccaccagaac 459

                                                                       
Query: 522 agccatgagtcttttttgttcatccgagcgagagactccccgtcgaggcactcgaacttc 581
           ||||| ||||| ||||||||||||||||| |||| |||||| ||||||||||| ||||||
Sbjct: 458 agccacgagtcctttttgttcatccgagcaagagcctccccatcgaggcactcaaacttc 399

                                                                       
Query: 582 cacacactgttaccattcgtcgtcaatctcattccaccaacgaagcccgaccagtatcct 641
           ||||| ||||| ||  |||||||| |||||||||||||| || | |||||||| ||||||
Sbjct: 398 cacacgctgttgcc-ctcgtcgtcgatctcattccaccaccgcatcccgaccaatatcct 340

                                                                       
Query: 642 tccgctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaa 701
            || || ||||||||||||||||||||||| ||||| || |||| |||||||||||| ||
Sbjct: 339 gccactcacattcttcaccacccagaagtcgagcgccgccaggaacacggtgatgacgaa 280

                                         
Query: 702 gatgatgacgaagctcttcacgaagagcga 731
            |||||||||||||||||||||||||||||
Sbjct: 279 tatgatgacgaagctcttcacgaagagcga 250



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>gb|AY105506.1| Zea mays PCO099200 mRNA sequence
          Length = 795

 Score =  418 bits (211), Expect = e-113
 Identities = 334/375 (89%), Gaps = 1/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 360 ttcttggcatctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaag 419
           |||||||||||||||||||| | |||||| || || |||||||||| ||||||| |||||
Sbjct: 609 ttcttggcatctttgttgcactnggtgaatccaacaatgtttgcaatgcttagantcaag 550

                                                                       
Query: 420 caaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaaga 479
           ||||||||||||||||||||||||||||| |||||  | ||||||||||||||  |||||
Sbjct: 549 caaactccaacaacaagaaggtaatcagcctcaagcntgatgagtgaaaatataccaaga 490

                                                                       
Query: 480 atgatccatgcagcagcgttcaagtaaagagtccaccagaacagccatgagtcttttttg 539
           | |||||||||||||||  ||||||||||||||||||||||||||||||| || || |||
Sbjct: 489 acgatccatgcagcagcagtcaagtaaagagtccaccagaacagccatgaatccttnttg 430

                                                                       
Query: 540 ttcatccgagcgagagactccccgtcgaggcactcgaacttccacacactgttaccattc 599
           ||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||  ||
Sbjct: 429 ttcatccgagcgagagactccccatcaaggcattcaaacttccacacactgtttcc-gtc 371

                                                                       
Query: 600 gtcgtcaatctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcac 659
            || || |||||||||||||| || |||||||| |||||||| || ||||| ||||||||
Sbjct: 370 atcatcgatctcattccaccaccgcagcccgactagtatcctgccactgacgttcttcac 311

                                                                       
Query: 660 cacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatgatgacgaagctctt 719
           |||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||
Sbjct: 310 cacccagaagtcaagcgctgcgaggagcaccgtgatcacgaagatgatgacgaagctctt 251

                          
Query: 720 cacgaagagcgagaa 734
           ||| |||||||||||
Sbjct: 250 cacaaagagcgagaa 236



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>dbj|AK121761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090D14, full
           insert sequence
          Length = 1086

 Score =  319 bits (161), Expect = 7e-84
 Identities = 300/345 (86%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 360 ttcttggcatctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaag 419
           |||||||||||||||||||| |||||||| || || |||||||| | ||| ||| |||||
Sbjct: 619 ttcttggcatctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaag 560

                                                                       
Query: 420 caaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaaga 479
           ||||||||||||||||||||||||||||| | |||||| |||||||| |||||| |||||
Sbjct: 559 caaactccaacaacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaaga 500

                                                                       
Query: 480 atgatccatgcagcagcgttcaagtaaagagtccaccagaacagccatgagtcttttttg 539
           |  ||||||||||||||  ||||||| |||||||||||||||||||||||||| || |||
Sbjct: 499 acaatccatgcagcagcagtcaagtacagagtccaccagaacagccatgagtccttcttg 440

                                                                       
Query: 540 ttcatccgagcgagagactccccgtcgaggcactcgaacttccacacactgttaccattc 599
           ||||||| ||| |||||||| || || |||||||| ||||||||||| || || ||  ||
Sbjct: 439 ttcatcctagcaagagactctccatcaaggcactcaaacttccacacgctattgcc-ctc 381

                                                                       
Query: 600 gtcgtcaatctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcac 659
            || || |||||||||||||| || ||||| |||| |||||| || ||||| ||||| ||
Sbjct: 380 atcatcgatctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgac 321

                                                        
Query: 660 cacccagaagtcaagcgcggcaaggagcacggtgatgacaaagat 704
           ||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 320 cacccagaagtcaagtgctgccaggagcacggtgatgacaaagat 276



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>dbj|AK064784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B15, full
           insert sequence
          Length = 987

 Score =  319 bits (161), Expect = 7e-84
 Identities = 300/345 (86%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 360 ttcttggcatctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaag 419
           |||||||||||||||||||| |||||||| || || |||||||| | ||| ||| |||||
Sbjct: 527 ttcttggcatctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaag 468

                                                                       
Query: 420 caaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaaga 479
           ||||||||||||||||||||||||||||| | |||||| |||||||| |||||| |||||
Sbjct: 467 caaactccaacaacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaaga 408

                                                                       
Query: 480 atgatccatgcagcagcgttcaagtaaagagtccaccagaacagccatgagtcttttttg 539
           |  ||||||||||||||  ||||||| |||||||||||||||||||||||||| || |||
Sbjct: 407 acaatccatgcagcagcagtcaagtacagagtccaccagaacagccatgagtccttcttg 348

                                                                       
Query: 540 ttcatccgagcgagagactccccgtcgaggcactcgaacttccacacactgttaccattc 599
           ||||||| ||| |||||||| || || |||||||| ||||||||||| || || ||  ||
Sbjct: 347 ttcatcctagcaagagactctccatcaaggcactcaaacttccacacgctattgcc-ctc 289

                                                                       
Query: 600 gtcgtcaatctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcac 659
            || || |||||||||||||| || ||||| |||| |||||| || ||||| ||||| ||
Sbjct: 288 atcatcgatctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgac 229

                                                        
Query: 660 cacccagaagtcaagcgcggcaaggagcacggtgatgacaaagat 704
           ||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 228 cacccagaagtcaagtgctgccaggagcacggtgatgacaaagat 184



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>dbj|AK060262.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-A04, full
           insert sequence
          Length = 876

 Score =  242 bits (122), Expect = 1e-60
 Identities = 200/226 (88%)
 Strand = Plus / Minus

                                                                       
Query: 282 aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagcggcattttca 341
           |||||||| |||||||  |||||||||||||||||||| || ||||||||   |  ||||
Sbjct: 226 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagcatgaccttca 167

                                                                       
Query: 342 gcaaaagctcggatgttcttcttggcatctttgttgcatttggtgaaccccacgatgttt 401
               || | ||||| |||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 166 aagtaaccccggatattcttcttggcatctttgttgcatctggtgaacccaacaatgttt 107

                                                                       
Query: 402 gcaaggcttagagtcaagcaaactccaacaacaagaaggtaatcagcttcaagtctaatg 461
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 106 gcaaggcttagagtcaagcaaactccaacaacaagaaggtagtcagcttcaagtctgata 47

                                                         
Query: 462 agtgaaaatatcgcaagaatgatccatgcagcagcgttcaagtaaa 507
           |||||||||||| ||||||||||||||||||||||  |||||||||
Sbjct: 46  agtgaaaatatcccaagaatgatccatgcagcagcagtcaagtaaa 1



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>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017J22, complete sequence
          Length = 177153

 Score =  196 bits (99), Expect = 7e-47
 Identities = 120/127 (94%)
 Strand = Plus / Minus

                                                                         
Query: 370   ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429
             ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 60405 ctttgttgcatctggtgaacccaacaatgtttgcaaggcttagagtcaagcaaactccaa 60346

                                                                         
Query: 430   caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489
             ||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||
Sbjct: 60345 caacaagaaggtagtcagcttcaagtctgataagtgaaaatatcccaagaatgatccatg 60286

                    
Query: 490   cagcagc 496
             |||||||
Sbjct: 60285 cagcagc 60279



 Score =  180 bits (91), Expect = 4e-42
 Identities = 155/175 (88%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                         
Query: 557   ctccccgtcgaggcactcgaacttccacacactgttaccattcgtcgtcaatctcattcc 616
             |||||| ||||||||||| ||||||||||| ||||| || | ||||||| ||||||||||
Sbjct: 59184 ctccccatcgaggcactcaaacttccacacgctgttgccct-cgtcgtcgatctcattcc 59126

                                                                         
Query: 617   accaacgaagcccgaccagtatccttccgctgacattcttcaccacccagaagtcaagcg 676
             |||| || | |||||||| |||||| || || ||||||||||||||||||||||| ||||
Sbjct: 59125 accaccgcatcccgaccaatatcctgccactcacattcttcaccacccagaagtcgagcg 59066

                                                                    
Query: 677   cggcaaggagcacggtgatgacaaagatgatgacgaagctcttcacgaagagcga 731
             | || |||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 59065 ccgccaggaacacggtgatgacgaatatgatgacgaagctcttcacgaagagcga 59011



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                      
Query: 499   tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagag 555
             |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 59329 tcaagtaaagagtccaccagaacagccacgagtcctttttgttcatccgagcaagag 59273



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 282   aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagc 331
             |||||||| |||||||  |||||||||||||||||||| || ||||||||
Sbjct: 60989 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagc 60940



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  196 bits (99), Expect = 7e-47
 Identities = 120/127 (94%)
 Strand = Plus / Minus

                                                                           
Query: 370     ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429
               ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 3430923 ctttgttgcatctggtgaacccaacaatgtttgcaaggcttagagtcaagcaaactccaa 3430864

                                                                           
Query: 430     caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489
               ||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||
Sbjct: 3430863 caacaagaaggtagtcagcttcaagtctgataagtgaaaatatcccaagaatgatccatg 3430804

                      
Query: 490     cagcagc 496
               |||||||
Sbjct: 3430803 cagcagc 3430797



 Score =  180 bits (91), Expect = 4e-42
 Identities = 155/175 (88%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                           
Query: 557     ctccccgtcgaggcactcgaacttccacacactgttaccattcgtcgtcaatctcattcc 616
               |||||| ||||||||||| ||||||||||| ||||| || | ||||||| ||||||||||
Sbjct: 3429702 ctccccatcgaggcactcaaacttccacacgctgttgccct-cgtcgtcgatctcattcc 3429644

                                                                           
Query: 617     accaacgaagcccgaccagtatccttccgctgacattcttcaccacccagaagtcaagcg 676
               |||| || | |||||||| |||||| || || ||||||||||||||||||||||| ||||
Sbjct: 3429643 accaccgcatcccgaccaatatcctgccactcacattcttcaccacccagaagtcgagcg 3429584

                                                                      
Query: 677     cggcaaggagcacggtgatgacaaagatgatgacgaagctcttcacgaagagcga 731
               | || |||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 3429583 ccgccaggaacacggtgatgacgaatatgatgacgaagctcttcacgaagagcga 3429529



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                        
Query: 499     tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagag 555
               |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 3429847 tcaagtaaagagtccaccagaacagccacgagtcctttttgttcatccgagcaagag 3429791



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                 
Query: 282     aatgctgactgcagggatgatgtgatgcgggatgtgatggcgttttgagc 331
               |||||||| |||||||  |||||||||||||||||||| || ||||||||
Sbjct: 3431507 aatgctgattgcagggtggatgtgatgcgggatgtgatcgcattttgagc 3431458



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 9e-28
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                            
Query: 370      ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429
                |||||||||| |||||||| || || |||||||| | ||| ||| |||||||||||||||
Sbjct: 12835152 ctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaagcaaactccaa 12835093

                                                                            
Query: 430      caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489
                ||||||||||||||||||| | |||||| |||||||| |||||| ||||||  |||||||
Sbjct: 12835092 caacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaagaacaatccatg 12835033

                       
Query: 490      cagcagc 496
                |||||||
Sbjct: 12835032 cagcagc 12835026



 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                            
Query: 607      atctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcaccacccag 666
                |||||||||||||| || ||||| |||| |||||| || ||||| ||||| |||||||||
Sbjct: 12832668 atctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgaccacccag 12832609

                                                      
Query: 667      aagtcaagcgcggcaaggagcacggtgatgacaaagat 704
                |||||||| || || |||||||||||||||||||||||
Sbjct: 12832608 aagtcaagtgctgccaggagcacggtgatgacaaagat 12832571



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                            
Query: 499      tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagagact 558
                ||||||| |||||||||||||||||||||||||| || |||||||||| ||| |||||||
Sbjct: 12832856 tcaagtacagagtccaccagaacagccatgagtccttcttgttcatcctagcaagagact 12832797



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>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0489E06
          Length = 140229

 Score =  133 bits (67), Expect = 9e-28
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                          
Query: 370    ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429
              |||||||||| |||||||| || || |||||||| | ||| ||| |||||||||||||||
Sbjct: 115551 ctttgttgcacttggtgaagccaacaatgtttgctatgctgagactcaagcaaactccaa 115492

                                                                          
Query: 430    caacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgcaagaatgatccatg 489
              ||||||||||||||||||| | |||||| |||||||| |||||| ||||||  |||||||
Sbjct: 115491 caacaagaaggtaatcagcatgaagtctgatgagtgagaatatcccaagaacaatccatg 115432

                     
Query: 490    cagcagc 496
              |||||||
Sbjct: 115431 cagcagc 115425



 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                          
Query: 607    atctcattccaccaacgaagcccgaccagtatccttccgctgacattcttcaccacccag 666
              |||||||||||||| || ||||| |||| |||||| || ||||| ||||| |||||||||
Sbjct: 113067 atctcattccaccagcgcagcccaaccaatatcctcccactgacgttcttgaccacccag 113008

                                                    
Query: 667    aagtcaagcgcggcaaggagcacggtgatgacaaagat 704
              |||||||| || || |||||||||||||||||||||||
Sbjct: 113007 aagtcaagtgctgccaggagcacggtgatgacaaagat 112970



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 499    tcaagtaaagagtccaccagaacagccatgagtcttttttgttcatccgagcgagagact 558
              ||||||| |||||||||||||||||||||||||| || |||||||||| ||| |||||||
Sbjct: 113255 tcaagtacagagtccaccagaacagccatgagtccttcttgttcatcctagcaagagact 113196



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>ref|NM_100803.3| Arabidopsis thaliana unknown protein AT1G09330 mRNA, complete cds
          Length = 990

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 124/146 (84%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                       
Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475
           ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | |
Sbjct: 614 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 555

                                                                       
Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534
           ||| || | ||||||||| || | |||| ||||| ||||||||||| |||||||||||||
Sbjct: 554 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 496

                                     
Query: 535 ttttgttcatccgagcgagagactcc 560
           | |||||||||||||| | |||||||
Sbjct: 495 tcttgttcatccgagccaaagactcc 470



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705
           ||||||||||| ||||||||||||||||| || ||||| || || ||||  |||||||||
Sbjct: 385 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 326

                      
Query: 706 atgacgaagct 716
           ||||| |||||
Sbjct: 325 atgacaaagct 315



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>emb|BX818022.1|CNS0AAQD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL57ZA01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 973

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 124/146 (84%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                       
Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475
           ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | |
Sbjct: 614 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 555

                                                                       
Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534
           ||| || | ||||||||| || | |||| ||||| ||||||||||| |||||||||||||
Sbjct: 554 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 496

                                     
Query: 535 ttttgttcatccgagcgagagactcc 560
           | |||||||||||||| | |||||||
Sbjct: 495 tcttgttcatccgagccaaagactcc 470



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705
           ||||||||||| ||||||||||||||||| || ||||| || || ||||  |||||||||
Sbjct: 385 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 326

                      
Query: 706 atgacgaagct 716
           ||||| |||||
Sbjct: 325 atgacaaagct 315



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>gb|BT004772.1| Arabidopsis thaliana At1g09330 gene, complete cds
          Length = 561

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 124/146 (84%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                       
Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475
           ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | |
Sbjct: 426 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 367

                                                                       
Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534
           ||| || | ||||||||| || | |||| ||||| ||||||||||| |||||||||||||
Sbjct: 366 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 308

                                     
Query: 535 ttttgttcatccgagcgagagactcc 560
           | |||||||||||||| | |||||||
Sbjct: 307 tcttgttcatccgagccaaagactcc 282



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705
           ||||||||||| ||||||||||||||||| || ||||| || || ||||  |||||||||
Sbjct: 197 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 138

                      
Query: 706 atgacgaagct 716
           ||||| |||||
Sbjct: 137 atgacaaagct 127



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>gb|AY085379.1| Arabidopsis thaliana clone 14886 mRNA, complete sequence
          Length = 935

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 124/146 (84%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                       
Query: 416 caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475
           ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | |
Sbjct: 584 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 525

                                                                       
Query: 476 aagaatgatccatgcagcagcgttcaag-taaagagtccaccagaacagccatgagtctt 534
           ||| || | ||||||||| || | |||| ||||| ||||||||||| |||||||||||||
Sbjct: 524 aaggataaaccatgcagctgc-tgcaaggtaaagtgtccaccagaaaagccatgagtctt 466

                                     
Query: 535 ttttgttcatccgagcgagagactcc 560
           | |||||||||||||| | |||||||
Sbjct: 465 tcttgttcatccgagccaaagactcc 440



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 646 ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705
           ||||||||||| ||||||||||||||||| || ||||| || || ||||  |||||||||
Sbjct: 355 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 296

                      
Query: 706 atgacgaagct 716
           ||||| |||||
Sbjct: 295 atgacaaagct 285



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>emb|X54689.1|TAAGCNN17 Wheat alpha-gliadin pseudogene (clone CNNE17)
          Length = 3566

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                        
Query: 226  ggtaacacagttgtatgtaattttgggcctctgtgtaatctggacttcagatgccgaatg 285
            |||||| | |||| |||||| ||||||||||||||||||||||||||||||  | |||||
Sbjct: 3360 ggtaaccctgttgcatgtaaatttgggcctctgtgtaatctggacttcagacactgaatg 3419

                              
Query: 286  ctgactgcagggatgatg 303
            | || | |||||||||||
Sbjct: 3420 ccgatttcagggatgatg 3437



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>emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35)
          Length = 3573

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                        
Query: 226  ggtaacacagttgtatgtaattttgggcctctgtgtaatctggacttcagatgccgaatg 285
            |||||| | |||| |||||| ||||||||||||||||||||||||||||||  | |||||
Sbjct: 3366 ggtaaccctgttgcatgtaaatttgggcctctgtgtaatctggacttcagacactgaatg 3425

                              
Query: 286  ctgactgcagggatgatg 303
            | || | |||||||||||
Sbjct: 3426 ccgatttcagggatgatg 3443



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                        
Query: 48   ccaccagngtacaagagaagaagaaagtatgctctttagtacaggagaaagtgtaaactt 107
            ||||||  |||||||||| |  || |||||||||||||||  | |||||||||| || ||
Sbjct: 3173 ccaccatggtacaagagatgctgagagtatgctctttagtgtatgagaaagtgtgaaatt 3232

                    
Query: 108  acctaggg 115
            | ||||||
Sbjct: 3233 atctaggg 3240



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>emb|X54517.1|TAAGCNN16 Wheat alpha-gliadin pseudogene (clone CNN16)
          Length = 3581

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                        
Query: 226  ggtaacacagttgtatgtaattttgggcctctgtgtaatctggacttcagatgccgaatg 285
            |||||| | |||| |||||| ||||||||||||||||||||||||||||||  | |||||
Sbjct: 3375 ggtaaccctgttgcatgtaaatttgggcctctgtgtaatctggacttcagacactgaatg 3434

                              
Query: 286  ctgactgcagggatgatg 303
            | || | |||||||||||
Sbjct: 3435 ccgatttcagggatgatg 3452



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>gb|AC006416.2|T31J12 Arabidopsis thaliana chromosome 1 BAC T31J12 sequence, complete
             sequence
          Length = 16549

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 503   gtaaagagtccaccagaacagccatgagtcttttttgttcatccgagc 550
             |||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 12002 gtaaagtgtccaccagaaaagccatgagtctttcttgttcatccgagc 12049



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                         
Query: 646   ctgacattcttcaccacccagaagtcaagcgcggcaaggagcacggtgatgacaaagatg 705
             ||||||||||| ||||||||||||||||| || ||||| || || ||||  |||||||||
Sbjct: 12265 ctgacattcttaaccacccagaagtcaagagcagcaagaagaacagtgactacaaagatg 12324

                        
Query: 706   atgacgaagct 716
             ||||| |||||
Sbjct: 12325 atgacaaagct 12335



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                         
Query: 416   caagcaaactccaacaacaagaaggtaatcagcttcaagtctaatgagtgaaaatatcgc 475
             ||||||||| ||||||||||| || || ||||||| || |||||| || ||||||| | |
Sbjct: 11244 caagcaaacgccaacaacaagcagatagtcagcttgaaatctaatcagagaaaatacccc 11303

                               
Query: 476   aagaatgatccatgcagc 493
             ||| || | |||||||||
Sbjct: 11304 aaggataaaccatgcagc 11321



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>gb|AC166090.23| Glycine max clone gmw1-103e11, complete sequence
          Length = 89397

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                         
Query: 370   ctttgttgcatttggtgaaccccacgatgtttgcaaggcttagagtcaagcaaactccaa 429
             |||| ||||||||||| || || || || ||||||| ||| || ||||  |||||||| |
Sbjct: 57169 cttttttgcatttggtaaaaccaacaatatttgcaatgctaagggtcagacaaactccta 57228

                                                        
Query: 430   caacaagaaggtaatcagcttcaagtctaatgagtgaaaatat 472
             ||||||| || |||||||||| ||| || |||||||| |||||
Sbjct: 57229 caacaaggagataatcagcttgaagccttatgagtgagaatat 57271



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 510   gtccaccagaacagccatgagtcttttttgttcatccgagc 550
             ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 57951 gtccaccagaaaagccatgagtccttcttgttcatccgagc 57991



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>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete
              sequence
          Length = 193363

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 519    aacagccatgagtcttttttgtt 541
              |||||||||||||||||||||||
Sbjct: 135555 aacagccatgagtcttttttgtt 135533



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>dbj|AB222076.1| Lilium hybrid division I LHbHLH2 mRNA for bHLH transcription
           factor, complete cds
          Length = 2406

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 688 acggtgatgacaaagatgatgacgaa 713
           ||||||||||||| ||||||||||||
Sbjct: 866 acggtgatgacaatgatgatgacgaa 891



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>emb|AL358934.19| Human DNA sequence from clone RP11-459D20 on chromosome 9 Contains a
            transcription factor IIA small 12 kDa subunit (GTF2A2)
            pseudogene, complete sequence
          Length = 95922

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 357  ttcttcttggcatctttgttg 377
            |||||||||||||||||||||
Sbjct: 5402 ttcttcttggcatctttgttg 5382



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>gb|AC108137.8| Homo sapiens chromosome 15, clone RP11-941F15, complete sequence
          Length = 177015

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   gaatgctgactgcagggatga 301
             |||||||||||||||||||||
Sbjct: 78740 gaatgctgactgcagggatga 78760



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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 507     agagtccaccagaacagccat 527
               |||||||||||||||||||||
Sbjct: 3807617 agagtccaccagaacagccat 3807637



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>gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map CIC06C03, complete
            sequence
          Length = 88068

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 411  agagtcaagcaaactccaacaacaa 435
            ||||||||||||||||||| |||||
Sbjct: 5970 agagtcaagcaaactccaataacaa 5946



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>ref|XM_217031.2| PREDICTED: Rattus norvegicus hypothetical LOC300207 (predicted)
           (LOC300207), mRNA
          Length = 435

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 510 gtccaccagaacagccatgag 530
           |||||||||||||||||||||
Sbjct: 74  gtccaccagaacagccatgag 94



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>gb|AC013486.12| Homo sapiens chromosome 15, clone RP11-2M12, complete sequence
          Length = 162060

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 281    gaatgctgactgcagggatga 301
              |||||||||||||||||||||
Sbjct: 142435 gaatgctgactgcagggatga 142415



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>gb|AC154828.2| Mus musculus BAC clone RP24-549A19 from 13, complete sequence
          Length = 138426

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 692    tgatgacaaagatgatgacga 712
              |||||||||||||||||||||
Sbjct: 122524 tgatgacaaagatgatgacga 122504



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>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete
             sequence
          Length = 255133

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 692   tgatgacaaagatgatgacga 712
             |||||||||||||||||||||
Sbjct: 27263 tgatgacaaagatgatgacga 27243



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>emb|AL713861.10| Mouse DNA sequence from clone RP23-367H15 on chromosome X, complete
             sequence
          Length = 169838

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   ctttgacagaaggtaacacag 235
             |||||||||||||||||||||
Sbjct: 75831 ctttgacagaaggtaacacag 75851



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>emb|AL844898.5| Mouse DNA sequence from clone RP23-346M17 on chromosome 2, complete
              sequence
          Length = 164288

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 693    gatgacaaagatgatgacgaa 713
              |||||||||||||||||||||
Sbjct: 103943 gatgacaaagatgatgacgaa 103963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,503,041
Number of Sequences: 3902068
Number of extensions: 6503041
Number of successful extensions: 137882
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137674
Number of HSP's gapped (non-prelim): 199
length of query: 736
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 713
effective length of database: 17,143,297,704
effective search space: 12223171262952
effective search space used: 12223171262952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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