ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd27m10 |
|---|---|
| Clone Library Name | barley_pub |
>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1193 Score = 167 bits (424), Expect = 3e-41 Identities = 84/205 (40%), Positives = 124/205 (60%) Frame = -3 Query: 782 SRKSFAFDSDAPGVGMLEKRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQ 603 +RKSFA+ V + + +L T D +QNL+S E+ +T V HYFD+ Sbjct: 989 ARKSFAYGRSGKPV---QNAALLQKSLKTVDVAYQNLESVELGVTTVDHYFDTLGGIARA 1045 Query: 602 GLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEK 423 R G S YI D T VRTL + + L+ R + LNP++YEG++K G EGVR+IE Sbjct: 1046 VKRARGEEASVYIGDQTRGGGTVRTLKDQIALETRARSLNPKYYEGLLKHGAEGVRQIEA 1105 Query: 422 RLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGY 243 ++TNT+GWSAT+ QV+ WVY+ + TF+ DE MR+RL + NP + ++ + LEA+ R Y Sbjct: 1106 QVTNTLGWSATTQQVEPWVYQRLSETFVLDEAMRRRLAELNPEASVRMAERLLEASARNY 1165 Query: 242 WETSEDNLERLRELYSEVEDKIEGI 168 W+ + L L+ E+ED++EGI Sbjct: 1166 WQPDAETLAALQGAADELEDRLEGI 1190
>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1194 Score = 164 bits (415), Expect = 3e-40 Identities = 85/210 (40%), Positives = 125/210 (59%), Gaps = 5/210 (2%) Frame = -3 Query: 782 SRKSFAFDSDAPGVGMLEKRKTFELALATADATFQNLDSSEISLTDVSHYFDS-----DP 618 +RKSFA+ D + + L+ D +QNL+S E+ +T V HYFD+ Sbjct: 989 ARKSFAYGRDGKSTKQVN---LLQNVLSKVDLAYQNLESVELGVTTVDHYFDTLGGIARA 1045 Query: 617 TKLVQGLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGV 438 TK QG G+ YI D T VRTL + + L+ R + LNP++YEG++K G EGV Sbjct: 1046 TKRAQG----GKETPVYIGDQTRGAGTVRTLQDQIALETRARSLNPKFYEGLLKHGAEGV 1101 Query: 437 REIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEA 258 R+IE ++TNT+GWSAT+GQV+ WVY+ + TF+ D+EMR+RL N + ++ Q LEA Sbjct: 1102 RQIEAQVTNTLGWSATTGQVEPWVYQRLSETFVLDDEMRERLASLNSAASSRMAQRLLEA 1161 Query: 257 NGRGYWETSEDNLERLRELYSEVEDKIEGI 168 + R YW+ L L+ E+ED++EG+ Sbjct: 1162 SDRNYWQPDPATLAALQAAADELEDRMEGV 1191
>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1279 Score = 143 bits (361), Expect = 5e-34 Identities = 66/202 (32%), Positives = 124/202 (61%), Gaps = 4/202 (1%) Frame = -3 Query: 761 DSDAPGVGMLEKRKT--FELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKD 588 +S A G G ++++ + L + D +DS+E ++D+ HYF S + + R++ Sbjct: 1074 NSSAYGGGRKGEKQSEILQKLLGSVDRVVHQVDSTEFGISDIDHYFSSSGSLQLAARRRN 1133 Query: 587 GRAPSSYI--ADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLT 414 + + ++ T++ ++ +++R++ R+KLLNP+W+EGM+K G+ G EI R+T Sbjct: 1134 TKTSDIKLNYVESFTSDIKLDEADKSLRVEYRSKLLNPKWFEGMLKHGHSGAGEISNRVT 1193 Query: 413 NTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWET 234 +GW A + VD+WVY++ T+ D EMR+RL NP + + ++ LEA+GRG W+ Sbjct: 1194 YMLGWDAVTKSVDDWVYKKTAETYALDPEMRERLATLNPQAIKNIVGRMLEAHGRGMWKA 1253 Query: 233 SEDNLERLRELYSEVEDKIEGI 168 + +E L+E+Y+++ED++EG+ Sbjct: 1254 DQSMIEELQEIYADLEDRLEGM 1275
>Y1441_METJA (Q58836) Hypothetical protein MJ1441| Length = 1226 Score = 133 bits (334), Expect = 7e-31 Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 1/201 (0%) Frame = -3 Query: 773 SFAFDSDAPGVGMLEKRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLR 594 S+A+ D G + FE L T D TF + + E L YF + Sbjct: 997 SYAYGKDVYGKKAIN---AFENILKTVDLTFNKVVTDEYDLFGCCCYFGTHGGLTNAARV 1053 Query: 593 KDGRAPSSYIADTTTAN-AQVRTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRL 417 G +Y DT N +VRTL E + + TKLLNP+W EGM + GY+G +I KR+ Sbjct: 1054 LKGEEVKAYYGDTRNPNNVEVRTLKEEIERVSLTKLLNPKWIEGMKRHGYKGAGDIAKRI 1113 Query: 416 TNTVGWSATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWE 237 GWSAT+ +V+NW+++E TF+++EE RK + N + ++ + LEA RG W+ Sbjct: 1114 GRVYGWSATTKEVENWIFDEIFNTFVKNEENRKFFKEHNIYALEEIARRLLEAYQRGLWK 1173 Query: 236 TSEDNLERLRELYSEVEDKIE 174 T+E N+E L+ Y E+E IE Sbjct: 1174 TTEGNIEELKRAYLEIEGDIE 1194
>Y908_METJA (Q58318) Hypothetical protein MJ0908| Length = 1232 Score = 114 bits (284), Expect = 5e-25 Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 2/189 (1%) Frame = -3 Query: 734 LEKRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADT 555 +E ++ F L+ + T +N DS E + + + + G+ P SY+ DT Sbjct: 1042 VEAKEEFINRLSKIELTVKNEDSQEWDIFEGDDFNSYHGGLIASVTYYSGKKPVSYVGDT 1101 Query: 554 TTANAQVRT--LSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQ 381 + N +RT L E + RTK++NP+W EGM + GY+G + K + + W ATSG Sbjct: 1102 SNPN-DIRTKHLKEEGKEIFRTKIMNPKWIEGMKRHGYKGAADFSKYVDHMFAWDATSGI 1160 Query: 380 VDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLREL 201 +D+W+YE+ ++ D++M + + NP + + + LEA RG W+ E+ E+LR+ Sbjct: 1161 IDDWMYEKIAEKYVFDKDMEEFFKENNPYALLNITERLLEAIERGMWKADEEMKEKLRKK 1220 Query: 200 YSEVEDKIE 174 Y E+E IE Sbjct: 1221 YLEIEGMIE 1229
>COBN_PSEDE (P29929) Aerobic cobaltochelatase cobN subunit (EC 6.6.1.2)| (Hydrogenobyrinic acid a,c-diamide cobaltochelatase cobN subunit) Length = 1275 Score = 88.2 bits (217), Expect = 3e-17 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 1/164 (0%) Frame = -3 Query: 728 KRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADTTT 549 +R FE L T +A QN D+ E L D Y+ + + G P+ Y D + Sbjct: 1086 ERDLFEERLRTIEAVVQNQDNREHDLLDSDDYYQFEGGMSAAAEQLGGHRPAIYHNDHSR 1145 Query: 548 ANAQV-RTLSETVRLDARTKLLNPRWYEGMMKSGYEGVREIEKRLTNTVGWSATSGQVDN 372 V R+L E + R +++NP+W +G+M+ GY+G EI + ++AT+G V + Sbjct: 1146 PEKPVIRSLEEEIGRVVRARVVNPKWIDGVMRHGYKGAFEIAATVDYMFAFAATTGAVRD 1205 Query: 371 WVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYW 240 +E A FI DE + + D NP +F +L + LEA R W Sbjct: 1206 HHFEAAYQAFIVDERVADFMRDKNPAAFAELAERLLEAIDRNLW 1249
>NAGZ_BORPE (Q7VWV8) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 352 Score = 33.9 bits (76), Expect = 0.59 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Frame = -3 Query: 767 AFDSDAPGVGMLEKRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKD 588 AF DA V ML + T LALA A ++ D H DP L + + KD Sbjct: 150 AFHHDARVVTMLSRALTQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLAR-ILKD 208 Query: 587 GRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKS--GYEGV 438 AP +++ D A + ++DA+ + RW +++ GY+GV Sbjct: 209 DAAPYAWLGDLVMP-AVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGV 259
>PTP1_NPVOP (O10274) Putative tyrosine-protein phosphatase 1 (EC 3.1.3.48)| (Protein-tyrosine phosphatase 1) Length = 220 Score = 32.3 bits (72), Expect = 1.7 Identities = 23/81 (28%), Positives = 35/81 (43%) Frame = -3 Query: 659 ISLTDVSHYFDSDPTKLVQGLRKDGRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNP 480 I LT+ + Y+D + L K R P + D + T+ E R T L+ Sbjct: 102 IDLTNTARYYDGAQMVKMGLLYKKIRVPGRAVPDDDIVAEFIETVDEFFR-RCPTMLVAV 160 Query: 479 RWYEGMMKSGYEGVREIEKRL 417 W G+ +SGY R + +RL Sbjct: 161 HWTHGLNRSGYLVCRYMVERL 181
>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 32.3 bits (72), Expect = 1.7 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = -3 Query: 398 SATSGQVDNWVYEEANTTFIEDEEMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNL 219 SA + +N+ YEE T E E+ +R + + + K + TFL+ GR E Sbjct: 25 SAFNKVCENYQYEEIRTPIFEHTELFERGVGDSTDIVSKEMYTFLDKGGRSLTLRPEGTA 84 Query: 218 ERLR-----ELYSEVEDKIE 174 +R +LY EV I+ Sbjct: 85 SVVRAFVEHKLYGEVSQPIK 104
>NAGZ_BORPA (Q7W9J5) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 353 Score = 32.0 bits (71), Expect = 2.3 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Frame = -3 Query: 767 AFDSDAPGVGMLEKRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKD 588 AF DA V ML + LALA A ++ D H DP L + + KD Sbjct: 150 AFHHDARVVTMLSRALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLAR-ILKD 208 Query: 587 GRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKS--GYEGV 438 AP +++ D A + ++DA+ + RW +++ GY+GV Sbjct: 209 DAAPYAWLGDLVMP-AVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGV 259
>NAGZ_BORBR (Q7WH65) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 353 Score = 32.0 bits (71), Expect = 2.3 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Frame = -3 Query: 767 AFDSDAPGVGMLEKRKTFELALATADATFQNLDSSEISLTDVSHYFDSDPTKLVQGLRKD 588 AF DA V ML + LALA A ++ D H DP L + + KD Sbjct: 150 AFHHDARVVTMLSRALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLAR-ILKD 208 Query: 587 GRAPSSYIADTTTANAQVRTLSETVRLDARTKLLNPRWYEGMMKS--GYEGV 438 AP +++ D A + ++DA+ + RW +++ GY+GV Sbjct: 209 DAAPYAWLGDLVMP-AVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGV 259
>UVRB_THET8 (Q56243) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 665 Score = 31.2 bits (69), Expect = 3.8 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 18/112 (16%) Frame = -3 Query: 446 EGVREIEKRLTNTVGWSATSGQVDNWVY----EEANTTFIEDEEMRKRLMDT-------N 300 EG E+ L T+G +A + + + W+Y EA IE+ R+ L + Sbjct: 520 EGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGIT 579 Query: 299 PNSFRKLLQTFLEANGRGYWE-------TSEDNLERLRELYSEVEDKIEGID 165 P + RK ++ + GY E + ED ER+ EL + E +D Sbjct: 580 PETVRKEVRAVIRP--EGYEEAPLEADLSGEDLRERIAELELAMWQAAEALD 629
>LAMC1_MOUSE (P02468) Laminin gamma-1 chain precursor (Laminin B2 chain)| Length = 1607 Score = 31.2 bits (69), Expect = 3.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 708 CSSNSRCHIPEPGLLGDLIDRCQP 637 C S RC +PG++GD DRCQP Sbjct: 408 CDSYGRCSC-KPGVMGDKCDRCQP 430
>LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 chain)| Length = 1609 Score = 31.2 bits (69), Expect = 3.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 708 CSSNSRCHIPEPGLLGDLIDRCQP 637 C S RC +PG++GD DRCQP Sbjct: 410 CDSYGRCSC-KPGVMGDKCDRCQP 432
>UBE4_CAEEL (Q09349) Probable ubiquitin conjugation factor E4| Length = 980 Score = 31.2 bits (69), Expect = 3.8 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = -3 Query: 455 SGYEGVREIEKRLTNTVGWSATSGQVDN---WVYEEA 354 SG + + ++EK++ N V W T ++ N VYEEA Sbjct: 721 SGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEA 757 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,254,220 Number of Sequences: 219361 Number of extensions: 2055697 Number of successful extensions: 6369 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6366 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 8466635400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
