ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27k19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF498270.1| Haynaldia villosa clone kong36 mRNA Length = 1083 Score = 575 bits (290), Expect = e-161 Identities = 423/465 (90%), Gaps = 3/465 (0%) Strand = Plus / Minus Query: 65 gtactacacaagatatacgtatacatgggttttacagagcagcatactggacaggatcac 124 ||||||||||||||| ||||||||||||| ||| ||||| || || ||||| |||||| Sbjct: 877 gtactacacaagatacacgtatacatggggcgtactgagcaacagaccggacaagatcac 818 Query: 125 aaagattcttgcttgattgcgcaagaacaactcagggtg--gctctacttgcgccttgcc 182 ||| ||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||| Sbjct: 817 aaa-attcttgcttggttgcgcaagcacaactcggggtgtggctctacttgcgccttgcc 759 Query: 183 aatatcggcacggcagtccttgcattttcagaaccggagctctgccgtgaccacgacgac 242 ||||||||||| |||||||||||| || ||||||||| ||||||||| |||||||||||| Sbjct: 758 aatatcggcacagcagtccttgcacttccagaaccggtgctctgccgcgaccacgacgac 699 Query: 243 ggcttcgccctgcccgccatcagcgcagacgctgcactagcttttatattccgcctcttc 302 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 698 ggctttgccctgcccgccatcagcgccgacgctgcactagcttttatattccgcctcttc 639 Query: 303 agcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatggaggag 362 ||||| ||||||| |||| |||| || |||||||| |||||||| ||||||||||||| | Sbjct: 638 agcgcaaggtctagcttgtctttcgaagctgagcctgatggctccgggaagatggaggcg 579 Query: 363 gccttgatcgccgctctcttgtcctttctgctcttctcgaaatttgaggcgaacctcaca 422 ||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||| Sbjct: 578 gccttgatcgctgctctcttgtccttcctgttcttctcgaaattcgaggcgaacctcaca 519 Query: 423 cgggctgctgcggacgcatcctctgcggagggtggcagaaggcgtactccaagtcccatc 482 || ||||| |||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 518 cgagctgcagcggcagcatcctctgcggagggtggcagaaggcgtactccgagccccatc 459 Query: 483 ttcctcgctgatttcttctcttcagcaactctcttcttttggctc 527 ||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 458 ctcctcgctgatttcttctcgtcagcaactctcttcttttggctc 414 Score = 280 bits (141), Expect = 6e-72 Identities = 159/164 (96%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 527 cctaaggcggtcgcggagggttctgttcagggaataatcatcggaatgacggctatcaga 586 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 322 cctaaggcggtcgcggagggttctgttcagggaataatcatcagaatgacggctatcaga 263 Query: 587 gaggcgttgaagccgaactaaaacaggctcctcttctttcttcttccgaatatcctctnc 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 262 gaggcgttgaagccgaactaaaacaggctcctcttctttcttcttccgaatatcctctcc 203 Query: 647 cttggtgttcgagcttatacataggatccgcaagcttgtctctt 690 | |||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 202 c-tggtgttcaagcttatacatgggatccgcaagcttgtctctt 160
>ref|XM_465274.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1323 Score = 291 bits (147), Expect = 2e-75 Identities = 378/454 (83%), Gaps = 1/454 (0%) Strand = Plus / Minus Query: 237 gacgacggcttcgccctgcccgccatcagcgcagacgctgcactagcttttatattccgc 296 |||||||||||| |||||| |||||||||||| || || |||| |||||||||||| ||| Sbjct: 1017 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 958 Query: 297 ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 356 |||||||| || || || | |||| ||||| | ||||| |||| ||| ||||||||| Sbjct: 957 ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 898 Query: 357 gaggaggccttgatcgccgctctcttgtcctttctgctcttctcgaaatttgaggcgaac 416 || | ||||| || || ||||| |||||| ||||||||||||| || ||||| || ||| Sbjct: 897 gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 838 Query: 417 ctcacacgggctgctgcggacgcatcctctgcggagggtggcagaaggcgtactccaagt 476 ||||| || ||||| | ||||| ||||| |||||||| | ||| |||||||||||| Sbjct: 837 ttcacagaagccgctgcagtggcatcttctgcagagggtggtaaaagccgtactccaagt 778 Query: 477 cccatcttcctcgctgatttcttctcttcagcaactctcttcttttggctcctaaggcgg 536 |||||||| || |||||| | ||||||||||||||||||||||||||||||||||| || Sbjct: 777 cccatctttctagctgatcttttctcttcagcaactctcttcttttggctcctaagacga 718 Query: 537 tcgcggagggttctgttcagggaataatcatcggaatgacggctatcagagaggcgttga 596 || || |||| |||||| || | || ||||| ||||| |||||||| ||||| |||||| Sbjct: 717 tcacgaagggctctgttaagagcgtagtcatcagaatgccggctatcggagagtcgttga 658 Query: 597 agccgaactaaaacaggctcctcttctttcttcttccgaatatcctctnccttggtgttc 656 || ||||||||||| || || ||||||||||||| || ||||||| || |||||||| Sbjct: 657 aggcgaactaaaactggttcagcttctttcttctttttaagatcctcttcc-tggtgttc 599 Query: 657 gagcttatacataggatccgcaagcttgtctctt 690 ||||||||||||||||||||||||||||||||| Sbjct: 598 aagcttatacataggatccgcaagcttgtctctt 565
>dbj|AK068494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156M22, full insert sequence Length = 1323 Score = 283 bits (143), Expect = 4e-73 Identities = 377/454 (83%), Gaps = 1/454 (0%) Strand = Plus / Minus Query: 237 gacgacggcttcgccctgcccgccatcagcgcagacgctgcactagcttttatattccgc 296 |||||||||||| |||||| |||||||||||| || || |||| |||||||||||| ||| Sbjct: 1017 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 958 Query: 297 ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 356 |||||||| || || || | |||| ||||| | ||||| |||| ||| ||||||||| Sbjct: 957 ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 898 Query: 357 gaggaggccttgatcgccgctctcttgtcctttctgctcttctcgaaatttgaggcgaac 416 || | ||||| || || ||||| |||||| ||||||||||||| || ||||| || ||| Sbjct: 897 gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 838 Query: 417 ctcacacgggctgctgcggacgcatcctctgcggagggtggcagaaggcgtactccaagt 476 ||||| || ||||| | ||||| ||||| |||||||| | ||| |||||||||||| Sbjct: 837 ttcacagaagccgctgcagtggcatcttctgcagagggtggtaaaagccgtactccaagt 778 Query: 477 cccatcttcctcgctgatttcttctcttcagcaactctcttcttttggctcctaaggcgg 536 |||||||| || |||||| | ||||||||||||||||||||||||||||||||||| || Sbjct: 777 cccatctttctagctgatcttttctcttcagcaactctcttcttttggctcctaagacga 718 Query: 537 tcgcggagggttctgttcagggaataatcatcggaatgacggctatcagagaggcgttga 596 || || |||| |||||| || | || ||||| ||||| |||||| | ||||| |||||| Sbjct: 717 tcacgaagggctctgttaagagcgtagtcatcagaatgccggctaccggagagtcgttga 658 Query: 597 agccgaactaaaacaggctcctcttctttcttcttccgaatatcctctnccttggtgttc 656 || ||||||||||| || || ||||||||||||| || ||||||| || |||||||| Sbjct: 657 aggcgaactaaaactggttcagcttctttcttctttttaagatcctcttcc-tggtgttc 599 Query: 657 gagcttatacataggatccgcaagcttgtctctt 690 ||||||||||||||||||||||||||||||||| Sbjct: 598 aagcttatacataggatccgcaagcttgtctctt 565
>gb|AY107525.1| Zea mays PCO115693 mRNA sequence Length = 726 Score = 224 bits (113), Expect = 3e-55 Identities = 371/456 (81%), Gaps = 1/456 (0%) Strand = Plus / Minus Query: 233 ccacgacgacggcttcgccctgcccgccatcagcgcagacgctgcactagcttttatatt 292 |||||| ||||||||| ||||||| |||||||| || | || || | ||||||||| || Sbjct: 521 ccacgaggacggcttcaccctgcctgccatcagtgctgtagcggctccagcttttatgtt 462 Query: 293 ccgcctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaa 352 ||||||||||||| ||||||| || || | ||| ||||||| |||| ||| || || Sbjct: 461 ccgcctcttcagcacgaggtcgggtttaccatgtgatgctgagcttgatgactccggaaa 402 Query: 353 gatggaggaggccttgatcgccgctctcttgtcctttctgctcttctcgaaatttgaggc 412 |||||||| || ||||| || || ||||| ||| ||||||| ||||| || || || || Sbjct: 401 gatggaggcagctttgattgcggccctcttatcccttctgcttttctcaaatttcgatgc 342 Query: 413 gaacctcacacgggctgctgcggacgcatcctctgcggagggtggcagaaggcgtactcc 472 ||| |||| || ||||||| ||||| ||||||||||| |||| || || || || Sbjct: 341 aaacttcactgaagccgctgcggcggcatcttctgcggagggaggcaagagccgcacacc 282 Query: 473 aagtcccatcttcctcgctgatttcttctcttcagcaactctcttcttttggctcctaag 532 ||| || ||||| ||||| || ||||||||||||||||||| ||| ||||||||||| || Sbjct: 281 aaggcctatctttctcgcggacttcttctcttcagcaactcgctttttttggctcctgag 222 Query: 533 gcggtcgcggagggttctgttcagggaataatcatcggaatgacggctatcagagaggcg 592 || |||||||| | ||||||||||| ||||||||| || || ||||| || ||||| || Sbjct: 221 acgatcgcggagtgctctgttcagggcataatcatcagagtgccggctgtctgagagtcg 162 Query: 593 ttgaagccgaactaaaacaggctcctcttctttcttcttccgaatatcctctnccttggt 652 ||||| ||||||||||| ||||| ||||||| |||||||||| ||||||| || |||| Sbjct: 161 ctgaaggcgaactaaaactggctcagcttcttttttcttccgaagatcctcttcc-tggt 103 Query: 653 gttcgagcttatacataggatccgcaagcttgtctc 688 |||| ||| |||||||||||||||||||||||||| Sbjct: 102 gttcaagccgatacataggatccgcaagcttgtctc 67
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 180 bits (91), Expect = 4e-42 Identities = 241/291 (82%) Strand = Plus / Minus Query: 237 gacgacggcttcgccctgcccgccatcagcgcagacgctgcactagcttttatattccgc 296 |||||||||||| |||||| |||||||||||| || || |||| |||||||||||| ||| Sbjct: 13011838 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 13011779 Query: 297 ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 356 |||||||| || || || | |||| ||||| | ||||| |||| ||| ||||||||| Sbjct: 13011778 ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 13011719 Query: 357 gaggaggccttgatcgccgctctcttgtcctttctgctcttctcgaaatttgaggcgaac 416 || | ||||| || || ||||| |||||| ||||||||||||| || ||||| || ||| Sbjct: 13011718 gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 13011659 Query: 417 ctcacacgggctgctgcggacgcatcctctgcggagggtggcagaaggcgtactccaagt 476 ||||| || ||||| | ||||| ||||| |||||||| | ||| |||||||||||| Sbjct: 13011658 ttcacagaagccgctgcagtggcatcttctgcagagggtggtaaaagccgtactccaagt 13011599 Query: 477 cccatcttcctcgctgatttcttctcttcagcaactctcttcttttggctc 527 |||||||| || |||||| | |||||||||||||||||||||||||||||| Sbjct: 13011598 cccatctttctagctgatcttttctcttcagcaactctcttcttttggctc 13011548 Score = 119 bits (60), Expect = 1e-23 Identities = 111/127 (87%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 564 tcatcggaatgacggctatcagagaggcgttgaagccgaactaaaacaggctcctcttct 623 ||||| ||||| |||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct: 13011421 tcatcagaatgccggctatcggagagtcgttgaaggcgaactaaaactggttcagcttct 13011362 Query: 624 ttcttcttccgaatatcctctnccttggtgttcgagcttatacataggatccgcaagctt 683 |||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||||| Sbjct: 13011361 ttcttctttttaagatcctcttcct-ggtgttcaagcttatacataggatccgcaagctt 13011303 Query: 684 gtctctt 690 ||||||| Sbjct: 13011302 gtctctt 13011296
>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0688H12 Length = 139279 Score = 180 bits (91), Expect = 4e-42 Identities = 241/291 (82%) Strand = Plus / Minus Query: 237 gacgacggcttcgccctgcccgccatcagcgcagacgctgcactagcttttatattccgc 296 |||||||||||| |||||| |||||||||||| || || |||| |||||||||||| ||| Sbjct: 121481 gacgacggcttcaccctgctcgccatcagcgctgaggcagcaccagcttttatatttcgc 121422 Query: 297 ctcttcagcgcgaggtctatcttgccttttgaggctgagccggatggctctgggaagatg 356 |||||||| || || || | |||| ||||| | ||||| |||| ||| ||||||||| Sbjct: 121421 ctcttcagtgcaagatccagcttgttctttgaagttgagcttgatgactccgggaagatg 121362 Query: 357 gaggaggccttgatcgccgctctcttgtcctttctgctcttctcgaaatttgaggcgaac 416 || | ||||| || || ||||| |||||| ||||||||||||| || ||||| || ||| Sbjct: 121361 gaagcagccttaattgctgctcttttgtcccttctgctcttctcaaattttgatgcaaac 121302 Query: 417 ctcacacgggctgctgcggacgcatcctctgcggagggtggcagaaggcgtactccaagt 476 ||||| || ||||| | ||||| ||||| |||||||| | ||| |||||||||||| Sbjct: 121301 ttcacagaagccgctgcagtggcatcttctgcagagggtggtaaaagccgtactccaagt 121242 Query: 477 cccatcttcctcgctgatttcttctcttcagcaactctcttcttttggctc 527 |||||||| || |||||| | |||||||||||||||||||||||||||||| Sbjct: 121241 cccatctttctagctgatcttttctcttcagcaactctcttcttttggctc 121191 Score = 119 bits (60), Expect = 1e-23 Identities = 111/127 (87%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 564 tcatcggaatgacggctatcagagaggcgttgaagccgaactaaaacaggctcctcttct 623 ||||| ||||| |||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct: 121064 tcatcagaatgccggctatcggagagtcgttgaaggcgaactaaaactggttcagcttct 121005 Query: 624 ttcttcttccgaatatcctctnccttggtgttcgagcttatacataggatccgcaagctt 683 |||||||| || ||||||| ||| ||||||| |||||||||||||||||||||||||| Sbjct: 121004 ttcttctttttaagatcctcttcct-ggtgttcaagcttatacataggatccgcaagctt 120946 Query: 684 gtctctt 690 ||||||| Sbjct: 120945 gtctctt 120939
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| Sbjct: 6380 taagagcgtttagatcactaaagtagtgatctaaacactcttatattagtttacagaggg 6321 Query: 64 agtac 68 ||||| Sbjct: 6320 agtac 6316 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| ||||||||||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct: 6338 taagagtgtttagatcactactttagtgatctaaacgctcttatattagtttacggaggg 6397 Query: 64 agtact 69 |||||| Sbjct: 6398 agtact 6403
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||| Sbjct: 6403 taagagcgtttagaacactattttagtgatctaaacactcttatattggtttacagaggg 6462 Query: 64 agtac 68 ||||| Sbjct: 6463 agtac 6467 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| ||||||||||||| ||||| ||||||| ||||||||||| |||| ||||| Sbjct: 6445 taagagtgtttagatcactaaaatagtgttctaaacgctcttatattagtttacggaggg 6386 Query: 64 agta 67 |||| Sbjct: 6385 agta 6382
>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene Length = 10815 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||| Sbjct: 7556 taagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacagaggg 7615 Query: 64 agta 67 |||| Sbjct: 7616 agta 7619 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatatta 51 |||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct: 7598 taagagcgtttagatcactaaagtagtgatctaaacgctcttatatta 7551
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||| Sbjct: 21716 taagagcgtttagatcactactttagtgatctaaacgctcttatatttatttacagaggg 21657 Query: 64 agta 67 |||| Sbjct: 21656 agta 21653 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||| Sbjct: 21674 taagagcgtttagatcactaaagtagtgatctaaacgctcttatatttctttacagaggg 21733 Query: 64 agta 67 |||| Sbjct: 21734 agta 21737
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| Sbjct: 765 taagagcgtttagatcactaaaatagtgatcaaaacactcttatattaatttacggaggg 824 Query: 64 agtac 68 ||||| Sbjct: 825 agtac 829 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| |||| ||||||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct: 807 taagagtgttttgatcactattttagtgatctaaacgctcttatattagtttactgaggg 748 Query: 64 agt 66 ||| Sbjct: 747 agt 745 Score = 48.1 bits (24), Expect = 0.039 Identities = 42/48 (87%) Strand = Plus / Minus Query: 20 actatgttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||||||||| ||||||||| |||| |||||||||| Sbjct: 8876 actattttagtgatctaaacgatcttatatttctttacagagggagta 8829
>emb|AJ400713.1|TAE400713 Triticum aestivum vp1B gene for VIVIPAROUS1, exons 1-6 Length = 4034 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||| ||||| ||||||||||||| ||||||||||| |||| |||||| Sbjct: 2732 taagagcgtttagattactattttagtgatctaaatgctcttatattagtttacagaggg 2791 Query: 64 agta 67 |||| Sbjct: 2792 agta 2795 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||| |||||||||||| |||| |||||||| ||||||||||| |||| ||||| Sbjct: 2774 taagagcatttagatcactaaaatagtaatctaaacgctcttatattagtttacggaggg 2715 Query: 64 agta 67 |||| Sbjct: 2714 agta 2711
>gb|AY133248.1| Aegilops tauschii starch synthase II gene, complete cds Length = 9024 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| Sbjct: 2874 taagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggaggg 2815 Query: 64 agta 67 |||| Sbjct: 2814 agta 2811 Score = 63.9 bits (32), Expect = 7e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||| |||| |||||||||||||| |||||||| || |||| ||| || Sbjct: 2832 taagagcgtttagattactactttagtgatctaaacgctcttatagtagtttacagacgg 2891 Query: 64 agta 67 |||| Sbjct: 2892 agta 2895
>emb|AJ302096.1|ASP302096 Aegilops speltoides Pina gene for puroindoline a, cultivar PI 393494 Length = 2570 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||||||||| ||||| ||||||| ||||||||||| |||| ||||| Sbjct: 1410 taagagcgtttagatcactattttagtattctaaacgctcttatattagtttacggaggg 1469 Query: 64 agta 67 |||| Sbjct: 1470 agta 1473 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||| |||| ||||||||||||| ||||||||||| |||| |||||| Sbjct: 1452 taagagcgtttagaatactaaaatagtgatctaaacgctcttatattagtttacagaggg 1393 Query: 64 agtacta 70 ||||||| Sbjct: 1392 agtacta 1386
>dbj|AB201447.1| Triticum aestivum wSSII-D gene for starch synthase II-D, complete cds Length = 7010 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| Sbjct: 1630 taagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggaggg 1571 Query: 64 agta 67 |||| Sbjct: 1570 agta 1567 Score = 63.9 bits (32), Expect = 7e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||| |||| |||||||||||||| |||||||| || |||| ||| || Sbjct: 1588 taagagcgtttagattactactttagtgatctaaacgctcttatagtagtttacagacgg 1647 Query: 64 agta 67 |||| Sbjct: 1648 agta 1651
>emb|AJ507214.1|HVU507214 Hordeum vulgare bbr gene for barley B recombinant Length = 4946 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatatt 50 |||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 4310 taagagcgtttagatcactactttagtgatctagacactcttatatt 4356 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatatt 50 |||||| || |||||||||| ||||||||||||| |||||||||| Sbjct: 4352 taagagtgtctagatcactaaagtagtgatctaaacgctcttatatt 4306
>gb|DQ295068.1| Secale cereale PKABA1 gene, partial sequence Length = 1082 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| ||||||||||| |||| |||||||||||| Sbjct: 971 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtact 1028 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 33 tctaaacactcttatattaatttaaagagggagtac 68 ||||||| ||||||||||| ||||| |||||||||| Sbjct: 969 tctaaacgctcttatattagtttaaggagggagtac 934
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 63.9 bits (32), Expect = 7e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||| |||||| ||||| ||||| || ||||||||||||||||| |||| |||||| Sbjct: 150213 taagagcatttagaacactactttagtaatttaaacactcttatattagtttacagaggg 150272 Query: 64 agta 67 |||| Sbjct: 150273 agta 150276
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 63.9 bits (32), Expect = 7e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||| |||||| |||| ||||| |||||||||||||||||||| |||| |||||| Sbjct: 34573 taagagcatttagaatactactttagtaatctaaacactcttatattagtttacagaggg 34514 Query: 64 agta 67 |||| Sbjct: 34513 agta 34510
>emb|CR626933.1| Triticum turgidum Length = 25216 Score = 61.9 bits (31), Expect = 3e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 7 gagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagt 66 ||||||||||||||| | |||||||||||| ||||||||||| |||| ||||||||| Sbjct: 11696 gagcgtttagatcaccaaagtagtgatctaaatactcttatatttctttatagagggagt 11755 Query: 67 act 69 ||| Sbjct: 11756 act 11758 Score = 40.1 bits (20), Expect = 9.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagta 67 |||||||||||| || ||||||||||| ||| |||||| |||| ||||||||| Sbjct: 11727 tttagatcactactttggtgatctaaacgctcatatatttctttacggagggagta 11672
>emb|CR626929.1| Triticum aestivum Length = 20745 Score = 61.9 bits (31), Expect = 3e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 7 gagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagt 66 ||||||||||||||| | |||||||||||| ||||||||||| |||| ||||||||| Sbjct: 14414 gagcgtttagatcaccaaagtagtgatctaaatactcttatatttctttatagagggagt 14473 Query: 67 act 69 ||| Sbjct: 14474 act 14476 Score = 40.1 bits (20), Expect = 9.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagta 67 |||||||||||| || ||||||||||| ||| |||||| |||| ||||||||| Sbjct: 14445 tttagatcactactttggtgatctaaacgctcatatatttctttacggagggagta 14390
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 ||||||||||||| ||| | |||||| ||||||||||||| |||| ||| ||||||| Sbjct: 201043 tttagatcactattttacttatctaagcactcttatattagtttacagatggagtac 200987 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 29769 tttagatcactactttagtgatctaaaaggtcttatattagtttacagagggaatact 29826 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| |||||||||||| |||||||||| |||| ||||||||||| Sbjct: 29795 tttagatcactaaagtagtgatctaaaaggtcttatattagtttacagagggagtac 29739
>dbj|AB178167.1| Triticum aestivum Wcbf2-2 mRNA for AP2/EREBP type transcription factor, complete cds Length = 941 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagta 67 ||||||||||||||||||||||||| |||| ||||||||| Sbjct: 782 tagtgatctaaacactcttatattagtttacggagggagta 822 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| |||||||||||||| ||| |||| |||| ||||||||||| |||| ||||| Sbjct: 801 taagagtgtttagatcactattttaatgatttaaatgctcttatattagtttaccgaggg 742 Query: 64 agta 67 |||| Sbjct: 741 agta 738
>gb|AF099671.1|AF099671 Secale cereale thaumatin-like protein 2 precursor (TLP2) mRNA, complete cds Length = 975 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| Sbjct: 669 tttagatcactaaagtagtgttctaaacactcttatattagtttacggagggagtac 725 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| ||||||| ||||| ||||||||||||| || |||||||| |||| |||||| Sbjct: 703 taagagtgtttagaacactactttagtgatctaaatgcttttatattagtttacagaggg 644 Query: 64 agta 67 |||| Sbjct: 643 agta 640
>gb|AF099670.1|AF099670 Secale cereale thaumatin-like protein 3 precursor (TLP3) gene, complete cds Length = 1003 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| Sbjct: 761 tttagatcactaaagtagtgttctaaacactcttatattagtttacggagggagtac 817 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| ||||||| ||||| ||||||||||||| || |||||||| |||| |||||| Sbjct: 795 taagagtgtttagaacactactttagtgatctaaatgcttttatattagtttacagaggg 736 Query: 64 agta 67 |||| Sbjct: 735 agta 732
>gb|AF096927.1|AF096927 Secale cereale thaumatin-like protein 1 precursor (TLP1) mRNA, complete cds Length = 1151 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| ||||| ||||||||||||||||||| |||| |||||||||| Sbjct: 659 tttagatcactaaagtagtgttctaaacactcttatattagtttacggagggagtac 715 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| ||||||| ||||| ||||||||||||| || |||||||| |||| |||||| Sbjct: 693 taagagtgtttagaacactactttagtgatctaaatgcttttatattagtttacagaggg 634 Query: 64 agta 67 |||| Sbjct: 633 agta 630
>gb|AY230322.1| Triticum aestivum FCA-A1 (Fca) gene, partial cds Length = 9585 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 35 taaacactcttatattaatttaaagagggagtacta 70 |||||||||||||||||||||| |||||||||||| Sbjct: 9214 taaacactcttatattaatttacggagggagtacta 9249
>gb|AF376136.1|AF376136 Triticum aestivum putative CRT/DRE-binding factor (CBF1) mRNA, complete cds Length = 800 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||| |||||||||||||| ||| |||| |||| ||||||||||| |||| ||||| Sbjct: 758 taagagtgtttagatcactattttaatgatttaaatgctcttatattagtttaccgaggg 699 Query: 64 agta 67 |||| Sbjct: 698 agta 695 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 27 tagtgatctaaacactcttatattaa 52 |||||||||||||||||||||||||| Sbjct: 739 tagtgatctaaacactcttatattaa 764
>emb|AM000057.1| Hordeum vulgare HKT1 gene for high-affinity sodium transporter, exons 1-3 Length = 2155 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagta 67 |||||| ||||| ||||| |||||||| ||||||||||| |||| |||||||||| Sbjct: 1283 tttagaacactactttagtaatctaaacgctcttatattagtttacagagggagta 1338 Score = 44.1 bits (22), Expect = 0.60 Identities = 55/66 (83%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||| |||| ||||| |||||| || |||||||| |||| || ||| Sbjct: 1317 taagagcgtttagattactaaagtagtgttctaaatgcttttatattagtttacaggggg 1258 Query: 64 agtact 69 |||||| Sbjct: 1257 agtact 1252
>gb|AF277253.1|AF277253 Australopyrum velutinum isolate H6724 disrupted meiotic cDNA 1 protein (DMC1) gene, partial cds Length = 1062 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagtact 69 ||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 843 tagtgatctaaacgctcttatatttctttacagagggagtact 885 Score = 50.1 bits (25), Expect = 0.010 Identities = 54/64 (84%), Gaps = 6/64 (9%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||||||||||||| |||||||||| |||||||||| |||| |||||| Sbjct: 862 taagagcgtttagatcacta------tgatctaaacgctcttatatttctttacagaggg 809 Query: 64 agta 67 |||| Sbjct: 808 agta 805
>gb|AF458279.1| Triticum monococcum isolate Tm896 rga2 protein (rga2) gene, partial cds Length = 1438 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 247 tttagatcactactttagtgatctaaaaggtcttatattagtttacagagggaatact 190 Score = 50.1 bits (25), Expect = 0.010 Identities = 49/57 (85%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| |||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaaagtagtgatctaaaaggtcttatattagtttacagagggagtac 277
>gb|AF458278.1| Triticum monococcum isolate Tm13010 rga2 protein (rga2) gene, partial cds Length = 1439 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 247 tttagatcactactttagtgatctaaaaggtcttatattagtttacagagggaatact 190 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| |||||||||||| | |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaaagtagtgatctaaa-agtcttatattagtttacagagggagtac 276
>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) gene, exons 1 and 2 Length = 2205 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 27 tagtgatctaaacactcttatattaattta 56 |||||||||||||||||||||||| ||||| Sbjct: 108 tagtgatctaaacactcttatatttattta 79
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaattta 56 |||||| ||||||||||| || ||| |||||| ||| ||||||||||| |||| Sbjct: 177681 taagagagtttagatcacaattttaatgatctcaacgctcttatattagttta 177733 Score = 46.1 bits (23), Expect = 0.15 Identities = 53/63 (84%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 |||||||||| |||||| || | ||||||||||| ||||||||||| |||| ||||| Sbjct: 177723 taagagcgttgagatcattaaaattgtgatctaaactctcttatattagtttacggaggg 177664 Query: 64 agt 66 ||| Sbjct: 177663 agt 177661
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 50.1 bits (25), Expect = 0.010 Identities = 57/67 (85%), Gaps = 3/67 (4%) Strand = Plus / Plus Query: 4 taagagcgtttagatcacta---tgttagtgatctaaacactcttatattaatttaaaga 60 |||||||||||||||||||| | ||||||||||||| |||| ||||| ||| | ||| Sbjct: 47967 taagagcgtttagatcactagagtagtagtgatctaaacgctctcatatttattcacaga 48026 Query: 61 gggagta 67 ||||||| Sbjct: 48027 gggagta 48033 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagta 67 ||||||||||||| ||||||||||| |||| | |||||||| Sbjct: 47986 tagtgatctaaacgctcttatattattttacatagggagta 47946
>gb|AY270159.1| Triticum aestivum resistance protein T10rga2-1A gene, complete cds Length = 4768 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 1135 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 1190 Score = 44.1 bits (22), Expect = 0.60 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 1160 tttagatcactac-ttagtgatctaaaaggtcttatattagtttacagagggaatact 1104
>gb|AF458280.1| Triticum urartu isolate Tu11498 rga2 protein (rga2) gene, partial cds Length = 1437 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458276.1| Triticum turgidum subsp. dicoccoides isolate Td4467 rga2 protein (rga2) gene, partial cds Length = 1436 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458275.1| Triticum turgidum subsp. durum isolate Langdon rga2 protein (rga2) gene, partial cds Length = 1438 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458273.1| Triticum aestivum isolate ThLr101A rga2 protein (rga2) gene, partial cds Length = 1438 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458272.1| Triticum aestivum isolate Weique rga2 protein (rga2) gene, partial cds Length = 1435 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458271.1| Triticum aestivum isolate Tesia rga2 protein (rga2) gene, partial cds Length = 1438 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458270.1| Triticum aestivum isolate Pavon rga2 protein (rga2) gene, partial cds Length = 1438 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458269.1| Triticum aestivum isolate Opata rga2 protein (rga2) gene, partial cds Length = 1437 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AF458268.1| Triticum aestivum isolate Nocazari rga2 protein (rga2) gene, partial cds Length = 1437 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| | |||||||||||| |||||||||| |||| ||||||||||| Sbjct: 220 tttagatcactaag-tagtgatctaaaaggtcttatattagtttacagagggagtac 275 Score = 44.1 bits (22), Expect = 0.60 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 245 tttagatcactac-ttagtgatctaaaaggtcttatattagtttacagagggaatact 189
>gb|AF458267.1| Triticum aestivum isolate Galvez rga2 protein (rga2) gene, partial cds Length = 1436 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| | |||||||||||| |||||||||| |||| ||||||||||| Sbjct: 220 tttagatcactaag-tagtgatctaaaaggtcttatattagtttacagagggagtac 275 Score = 44.1 bits (22), Expect = 0.60 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 245 tttagatcactac-ttagtgatctaaaaggtcttatattagtttacagagggaatact 189
>gb|AF458266.1| Triticum aestivum isolate Esmer rga2 protein (rga2) gene, partial cds Length = 1437 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 276
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || ||||||||||| |||||||||| |||| ||||||||||| Sbjct: 47549 tttagatcactaagt-agtgatctaaaaggtcttatattagtttacagagggagtac 47494 Score = 44.1 bits (22), Expect = 0.60 Identities = 50/58 (86%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| Sbjct: 47524 tttagatcactac-ttagtgatctaaaaggtcttatattagtttacagagggaatact 47580
>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene Length = 1862 Score = 48.1 bits (24), Expect = 0.039 Identities = 51/60 (85%) Strand = Plus / Plus Query: 10 cgtttagatcactatgttagtgatctaaacactcttatattaatttaaagagggagtact 69 ||||||||||| || ||||| |||||||| ||||||||||| || | ||||||||||| Sbjct: 1728 cgtttagatcattactttagttatctaaacgctcttatattacttcatggagggagtact 1787 Score = 44.1 bits (22), Expect = 0.60 Identities = 55/66 (83%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||| |||| || |||||||||| | |||||||| |||| ||| || Sbjct: 1764 taagagcgtttagataactaaagtaatgatctaaacgtttttatattagtttacagaagg 1705 Query: 64 agtact 69 |||||| Sbjct: 1704 agtact 1699
>gb|AF458277.1| Triticum turgidum subsp. dicoccoides isolate Td9803 rga2 protein (rga2) gene, partial cds Length = 1441 Score = 48.1 bits (24), Expect = 0.039 Identities = 51/59 (86%), Gaps = 2/59 (3%) Strand = Plus / Plus Query: 12 tttagatcactatgt--tagtgatctaaacactcttatattaatttaaagagggagtac 68 |||||||||||| || |||||||||||| |||||||||| |||| ||||||||||| Sbjct: 221 tttagatcactaagtagtagtgatctaaaaggtcttatattagtttacagagggagtac 279
>dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox protein, complete cds Length = 9755 Score = 48.1 bits (24), Expect = 0.039 Identities = 36/40 (90%) Strand = Plus / Minus Query: 28 agtgatctaaacactcttatattaatttaaagagggagta 67 ||||||||||||||||||||||| |||| ||||||||| Sbjct: 8008 agtgatctaaacactcttatatttctttacggagggagta 7969
>gb|BT009488.1| Triticum aestivum clone wr1.pk0058.g3:fis, full insert mRNA sequence Length = 1768 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagtact 69 |||||||||||| | |||||||||| | || |||||||||||| Sbjct: 397 tagtgatctaaaaagtcttatattagtctacagagggagtact 439
>emb|X65606.1|HVBKIN12G H.vulgare BKIN12 gene for protein kinase Length = 5574 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Plus Query: 12 tttagatcactatgttagtgatctaaacactcttatatt 50 ||||||| |||| ||||||||||||||| ||||||||| Sbjct: 2288 tttagataactactttagtgatctaaacattcttatatt 2326
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 46.1 bits (23), Expect = 0.15 Identities = 45/50 (90%), Gaps = 3/50 (6%) Strand = Plus / Minus Query: 4 taagagcgtttagatcactatgt-tagtgatc--taaacactcttatatt 50 ||||||||||||||||||||| | |||||||| ||||||| |||||||| Sbjct: 11930 taagagcgtttagatcactatttctagtgatctataaacacacttatatt 11881
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatatt 50 ||||||||||||| |||||| | |||||||| ||| |||||||||| Sbjct: 4968 taagagcgtttaggtcactacttgagtgatctgaacgctcttatatt 5014
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatatt 50 ||||||||||||| |||||| | |||||||| ||| |||||||||| Sbjct: 4737 taagagcgtttaggtcactacttgagtgatctgaacgctcttatatt 4783
>gb|AC110508.8| Mus musculus chromosome 3, clone RP23-382L1, complete sequence Length = 224790 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 608 aacaggctcctcttctttcttcttcc 633 |||| ||||||||||||||||||||| Sbjct: 124326 aacacgctcctcttctttcttcttcc 124301
>gb|AC004681.3| Arabidopsis thaliana chromosome 2 clone T26B15 map TEn5, complete sequence Length = 78732 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 47 tattaatttaaagagggagtac 68 |||||||||||||||||||||| Sbjct: 62073 tattaatttaaagagggagtac 62094
>gb|AY750993.1| Hordeum vulgare cultivar Strider VRN-H1 gene, complete cds; and transposon MITE-like and retrotransposon Lolaog, complete sequence Length = 17220 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 16731 ttagtaatctaaacgcttttatattaatttacagatggagta 16690
>gb|AF277249.1|AF277249 Taeniatherum caput-medusae isolate H10254 disrupted meiotic cDNA 1 protein (DMC1) gene, partial cds Length = 1080 Score = 44.1 bits (22), Expect = 0.60 Identities = 55/66 (83%), Gaps = 5/66 (7%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaacactcttatattaatttaaagaggg 63 ||||||||||||||||| |||||||| ||||| |||||||||| |||| |||||| Sbjct: 828 taagagcgtttagatca-----ttagtgatataaacgctcttatatttctttacagaggg 882 Query: 64 agtact 69 ||||| Sbjct: 883 tgtact 888
>gb|AY896052.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 559556 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 924 ttagtaatctaaacgcttttatattaatttacagatggagta 883
>gb|AY896044.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 401370 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 925 ttagtaatctaaacgcttttatattaatttacagatggagta 884
>gb|AY896042.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293411 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 924 ttagtaatctaaacgcttttatattaatttacagatggagta 883
>gb|AY896040.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293402 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 924 ttagtaatctaaacgcttttatattaatttacagatggagta 883
>gb|AY896036.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 220523 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 924 ttagtaatctaaacgcttttatattaatttacagatggagta 883
>gb|AY896035.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 212306 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 44.1 bits (22), Expect = 0.60 Identities = 37/42 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagagggagta 67 ||||| |||||||| || ||||||||||||| ||| |||||| Sbjct: 924 ttagtaatctaaacgcttttatattaatttacagatggagta 883
>emb|AL627086.22| Mouse DNA sequence from clone RP23-477P14 on chromosome 3, complete sequence Length = 106019 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 608 aacaggctcctcttctttcttcttcc 633 |||| ||||||||||||||||||||| Sbjct: 86654 aacacgctcctcttctttcttcttcc 86629
>gb|AY553259.1| Hordeum murinum isolate Hor_mur phosphoenolpyruvate carboxylase (pepC) gene, exons 1, 2 and partial cds Length = 1117 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagta 67 |||||||||||| ||||||||||| |||| ||||||||| Sbjct: 574 tagtgatctaaatgctcttatattagtttacggagggagta 614
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagta 67 ||||||||||||| |||| ||||| ||| | |||||||||| Sbjct: 85588 tagtgatctaaacgctctcatatttattcacagagggagta 85628 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 27 tagtgatctaaacactcttatattaatttaaagagggagta 67 ||||||||||||| || |||||||| |||| | |||||||| Sbjct: 85581 tagtgatctaaacgcttttatattattttacatagggagta 85541
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 244 gcttcgccctgcccgccatcagcgc 268 ||||||||||| ||||||||||||| Sbjct: 4410692 gcttcgccctggccgccatcagcgc 4410716
>gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosome 17, complete sequence Length = 191523 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 gttagtgatctaaacactcttatat 49 |||| |||||||||||||||||||| Sbjct: 108939 gttaatgatctaaacactcttatat 108915
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 35 taaacactcttatattaatttaaagagggagta 67 ||||| |||||||||||||||| ||||| |||| Sbjct: 73089 taaacgctcttatattaatttatagaggaagta 73121
>emb|X71654.1|SMCYP71B3 S.melongena CYP71A2 mRNA for hydroxylase Length = 1747 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 618 tcttctttcttcttccgaata 638 ||||||||||||||||||||| Sbjct: 832 tcttctttcttcttccgaata 812
>gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, complete sequence Length = 180352 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 gttagtgatctaaacactcttatat 49 |||| |||||||||||||||||||| Sbjct: 40589 gttaatgatctaaacactcttatat 40565
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 244 gcttcgccctgcccgccatcagcgc 268 ||||||||||| ||||||||||||| Sbjct: 4412383 gcttcgccctggccgccatcagcgc 4412407
>emb|BX001051.29| Zebrafish DNA sequence from clone DKEYP-68F9 in linkage group 9, complete sequence Length = 213486 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 gatctaaacactcttatattaattt 55 |||||||||| |||||||||||||| Sbjct: 185976 gatctaaacattcttatattaattt 185952
>dbj|D14990.1|POTCPEG4 Eggplant mRNA for cytochrome P-450EG4, complete cds Length = 1744 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 618 tcttctttcttcttccgaata 638 ||||||||||||||||||||| Sbjct: 832 tcttctttcttcttccgaata 812
>ref|NM_100363.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding AT1G04850 mRNA, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 tcctcttctttcttcttccg 634 |||||||||||||||||||| Sbjct: 683 tcctcttctttcttcttccg 664
>gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome 9, complete sequence Length = 213408 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 ctgatttcttctcttcagca 509 |||||||||||||||||||| Sbjct: 57483 ctgatttcttctcttcagca 57464
>gb|AC161809.3| Mus musculus chromosome 1, clone RP23-114N13, complete sequence Length = 213778 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 24777 ctcctcttctttcttcttcc 24796
>gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, complete sequence Length = 166568 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 130917 ctcctcttctttcttcttcc 130898
>gb|AC135409.3| Rattus norvegicus 8 BAC CH230-416D7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 231716 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gcagtccttgcattttcaga 214 |||||||||||||||||||| Sbjct: 144129 gcagtccttgcattttcaga 144110
>gb|AC149481.1| Populus trichocarpa clone Pop1-16J18, complete sequence Length = 120131 Score = 40.1 bits (20), Expect = 9.4 Identities = 46/55 (83%) Strand = Plus / Minus Query: 594 tgaagccgaactaaaacaggctcctcttctttcttcttccgaatatcctctncct 648 ||||| || |||| ||||||||| |||||||||||||| | | ||||||| ||| Sbjct: 65157 tgaaggcggactagaacaggctcagcttctttcttcttctgcaaatcctcttcct 65103
>gb|AC149541.1| Populus trichocarpa clone Pop1-12C14, complete sequence Length = 88772 Score = 40.1 bits (20), Expect = 9.4 Identities = 46/55 (83%) Strand = Plus / Minus Query: 594 tgaagccgaactaaaacaggctcctcttctttcttcttccgaatatcctctncct 648 ||||| || |||| ||||||||| |||||||||||||| | | ||||||| ||| Sbjct: 67024 tgaaggcggactagaacaggctcagcttctttcttcttctgcaaatcctcttcct 66970
>gb|AC116739.13| Mus musculus chromosome 17, clone RP23-435B24, complete sequence Length = 222382 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gctctcttgtcctttctgct 394 |||||||||||||||||||| Sbjct: 155063 gctctcttgtcctttctgct 155082
>gb|AC124495.2| Mus musculus BAC clone RP23-468F5 from chromosome 1, complete sequence Length = 182578 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 76048 ctcctcttctttcttcttcc 76029
>gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome 6, complete sequence Length = 252503 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tggctctgggaagatggagg 360 |||||||||||||||||||| Sbjct: 130373 tggctctgggaagatggagg 130354
>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence Length = 238516 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 98883 ctcctcttctttcttcttcc 98864
>emb|AL512601.18| Human DNA sequence from clone RP11-500B3 on chromosome 9 Contains the 5' end of a novel gene, complete sequence Length = 165517 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 9179 ctcctcttctttcttcttcc 9198
>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the 5' end of the NTRK2 gene for Neurotrophic tyrosine kinase, receptor, type 2 (TRKB) and a CpG island, complete sequence Length = 182914 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 78868 ctcctcttctttcttcttcc 78887
>ref|XM_971279.1| PREDICTED: Tribolium castaneum hypothetical protein LOC661110 (LOC661110), mRNA Length = 627 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 236 ctcctcttctttcttcttcc 217 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 52 ctcctcttctttcttcttcc 33
>gb|AC104518.5| Mus Musculus Strain 129S6/SvEvTac chromosome 17 BAC, RP22-187D17, Complete Sequence, complete sequence Length = 163367 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gctctcttgtcctttctgct 394 |||||||||||||||||||| Sbjct: 60826 gctctcttgtcctttctgct 60807
>emb|Z25420.1|GDINCENPB G.domesticus class II INCENP protein mRNA, complete CDS Length = 4354 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 gctcctcttctttcttcttc 632 |||||||||||||||||||| Sbjct: 1954 gctcctcttctttcttcttc 1935
>emb|Z25419.1|GDINCENPA G.domesticus class I INCENP protein mRNA, complete CDS Length = 4481 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 gctcctcttctttcttcttc 632 |||||||||||||||||||| Sbjct: 1954 gctcctcttctttcttcttc 1935
>gb|BT000147.1| Arabidopsis thaliana Unknown protein (At1g04850) mRNA, complete cds Length = 1356 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 tcctcttctttcttcttccg 634 |||||||||||||||||||| Sbjct: 596 tcctcttctttcttcttccg 577
>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence Length = 209458 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 37161 ctcctcttctttcttcttcc 37180
>ref|NM_205330.1| Gallus gallus inner centromere protein antigens 135/155kDa (INCENP), mRNA Length = 4481 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 gctcctcttctttcttcttc 632 |||||||||||||||||||| Sbjct: 1954 gctcctcttctttcttcttc 1935
>gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162978 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ttcagcaactctcttctttt 522 |||||||||||||||||||| Sbjct: 78865 ttcagcaactctcttctttt 78846
>emb|CR607262.1| full-length cDNA clone CS0DC012YG09 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1649 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 392 gccggatggctctgggaaga 373
>emb|CR604478.1| full-length cDNA clone CS0DC024YC08 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1284 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 37 gccggatggctctgggaaga 18
>emb|CR600761.1| full-length cDNA clone CS0DD003YI02 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1658 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 394 gccggatggctctgggaaga 375
>emb|CR596068.1| full-length cDNA clone CS0DD006YF08 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1651 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 398 gccggatggctctgggaaga 379
>emb|CR593042.1| full-length cDNA clone CS0DC024YB09 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1663 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 394 gccggatggctctgggaaga 375
>gb|AC087184.7| Mus Musculus Chromosome 3 RP23-403C5, complete sequence Length = 206400 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 165411 ctcctcttctttcttcttcc 165392 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 165386 ctcctcttctttcttcttcc 165367
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 ctcgctgatttcttctcttc 505 |||||||||||||||||||| Sbjct: 850351 ctcgctgatttcttctcttc 850370
>ref|XM_692368.1| PREDICTED: Danio rerio similar to UPF2 regulator of nonsense transcripts homolog (LOC569006), partial mRNA Length = 2532 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 231 ctcctcttctttcttcttcc 212
>gb|AY062609.1| Arabidopsis thaliana Unknown protein (F13M7.16) mRNA, complete cds Length = 1412 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 tcctcttctttcttcttccg 634 |||||||||||||||||||| Sbjct: 629 tcctcttctttcttcttccg 610
>ref|NM_005169.2| Homo sapiens paired-like (aristaless) homeobox 2a (PHOX2A), mRNA Length = 1700 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 405 gccggatggctctgggaaga 386
>gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosome 17, complete sequence Length = 245262 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tgatctaaacactcttatat 49 |||||||||||||||||||| Sbjct: 166311 tgatctaaacactcttatat 166330
>gb|DQ067256.1| Viola pubescens var. scabriuscula clone Vpub-11 microsatellite sequence Length = 581 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 271 ctcctcttctttcttcttcc 290
>emb|BX818444.1|CNS0AE4O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZC12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1464 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 tcctcttctttcttcttccg 634 |||||||||||||||||||| Sbjct: 661 tcctcttctttcttcttccg 642
>gb|AF201084.1|AF201084 Secale cereale secalin precursor (gsec2-1) gene, complete cds Length = 4971 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/35 (91%), Gaps = 2/35 (5%) Strand = Plus / Plus Query: 4 taagagcgtttagatcactatgttagtgatctaaa 38 |||||||||| ||||||||| ||||||||||||| Sbjct: 2974 taagagcgtt--gatcactattttagtgatctaaa 3006
>gb|AF182067.1|AF182067S1 Mus musculus secretory protein BV8 (Bv8) gene, exons 1 and 2 Length = 12920 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tggctctgggaagatggagg 360 |||||||||||||||||||| Sbjct: 6954 tggctctgggaagatggagg 6935
>gb|AY088435.1| Arabidopsis thaliana clone 6672 mRNA, complete sequence Length = 1519 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 tcctcttctttcttcttccg 634 |||||||||||||||||||| Sbjct: 683 tcctcttctttcttcttccg 664
>gb|AC004809.1|F13M7 Arabidopsis thaliana chromosome 1 BAC F13M7 sequence, complete sequence Length = 89713 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 tcctcttctttcttcttccg 634 |||||||||||||||||||| Sbjct: 55963 tcctcttctttcttcttccg 55944
>gb|BC041564.1| Homo sapiens paired-like (aristaless) homeobox 2a, mRNA (cDNA clone MGC:52227 IMAGE:5923445), complete cds Length = 1698 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 403 gccggatggctctgggaaga 384
>gb|AC110562.17| Mus musculus chromosome 17, clone RP23-268M4, complete sequence Length = 165190 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gctctcttgtcctttctgct 394 |||||||||||||||||||| Sbjct: 149162 gctctcttgtcctttctgct 149143
>gb|AC097103.8| Homo sapiens 3 BAC RP11-319G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 87000 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 62343 ctcctcttctttcttcttcc 62324
>emb|CR354610.16| Zebrafish DNA sequence from clone DKEY-29L6 in linkage group 13, complete sequence Length = 113182 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tctcttgtcctttctgctcttctc 400 |||||| ||||||||||||||||| Sbjct: 4045 tctcttctcctttctgctcttctc 4068
>gb|AY896037.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 236388 MADS box transcription factor (Vrn1) gene, partial cds Length = 1259 Score = 40.1 bits (20), Expect = 9.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 26 ttagtgatctaaacactcttatattaatttaaagag 61 ||||| |||||||| || ||||||||||||| |||| Sbjct: 923 ttagtaatctaaacgcttttatattaatttacagag 888
>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5) Length = 2199546 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 catgggttttacagagcagc 107 |||||||||||||||||||| Sbjct: 1731591 catgggttttacagagcagc 1731572
>gb|U51561.1|U51561 Homo sapiens cosmid clone N79E2 from 22q12, complete sequence Length = 39683 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tcttatattaatttaaagag 61 |||||||||||||||||||| Sbjct: 35567 tcttatattaatttaaagag 35586
>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence Length = 178509 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 112664 ctcctcttctttcttcttcc 112645
>dbj|AP000593.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-4J8, complete sequence Length = 124635 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 30118 gccggatggctctgggaaga 30137
>emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on chromosome X, complete sequence Length = 160230 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 493 atttcttctcttcagcaactctct 516 ||||||||||| |||||||||||| Sbjct: 26709 atttcttctctccagcaactctct 26732
>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence Length = 184206 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 45083 ctcctcttctttcttcttcc 45102
>emb|AL845534.7| Mouse DNA sequence from clone RP23-223C17 on chromosome 2, complete sequence Length = 191379 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 12471 ctcctcttctttcttcttcc 12490
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 cgccctgcccgccatcagcg 267 |||||||||||||||||||| Sbjct: 3400711 cgccctgcccgccatcagcg 3400692
>emb|CT030259.6| Mouse DNA sequence from clone RP24-529L21 on chromosome 9, complete sequence Length = 196590 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 ctgatttcttctcttcagca 509 |||||||||||||||||||| Sbjct: 184365 ctgatttcttctcttcagca 184346
>gb|AF022723.1|HOMOARIX2 Homo sapiens Arix homeodomain protein (ARIX) gene, exon 2 Length = 510 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gccggatggctctgggaaga 354 |||||||||||||||||||| Sbjct: 210 gccggatggctctgggaaga 191
>emb|AL672244.15| Mouse DNA sequence from clone RP23-43I8 on chromosome 16, complete sequence Length = 243114 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 175929 ctcctcttctttcttcttcc 175948
>emb|CT030710.7| Mouse DNA sequence from clone RP23-386A10 on chromosome 9, complete sequence Length = 206562 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 ctgatttcttctcttcagca 509 |||||||||||||||||||| Sbjct: 65180 ctgatttcttctcttcagca 65199
>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete sequence Length = 208695 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 5673 ctcctcttctttcttcttcc 5692
>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete sequence Length = 189540 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctcctcttctttcttcttcc 633 |||||||||||||||||||| Sbjct: 20214 ctcctcttctttcttcttcc 20195
>emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chromosome 4, complete sequence Length = 212360 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 gctcctcttctttcttcttc 632 |||||||||||||||||||| Sbjct: 75791 gctcctcttctttcttcttc 75772 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,832,682 Number of Sequences: 3902068 Number of extensions: 5832682 Number of successful extensions: 139561 Number of sequences better than 10.0: 135 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 139071 Number of HSP's gapped (non-prelim): 476 length of query: 690 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 667 effective length of database: 17,143,297,704 effective search space: 11434579568568 effective search space used: 11434579568568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
