ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27j02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480197.1| Oryza sativa (japonica cultivar-group), mRNA 232 1e-57
2ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group... 232 1e-57
3dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
4dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
7emb|AL929265.6| Mouse DNA sequence from clone RP23-316D8 on chro... 42 2.4
8gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosom... 40 9.4
9gb|AC135669.5| Mus musculus BAC clone RP23-360L22 from chromosom... 40 9.4
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.4
11ref|XM_001000155.1| PREDICTED: Mus musculus expressed sequence A... 40 9.4
12ref|XM_001003004.1| PREDICTED: Mus musculus similar to expressed... 40 9.4
13ref|XM_994240.1| PREDICTED: Mus musculus similar to expressed se... 40 9.4
14gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome... 40 9.4
15gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, comp... 40 9.4
16emb|AJ012302.1|LDE012302 Lactobacillus delbrueckii pepX gene, pa... 40 9.4
17gb|AF496130.1| Lactobacillus delbrueckii subsp. lactis XAA-pro d... 40 9.4
18emb|AL591215.12| Human DNA sequence from clone RP11-20D12 on chr... 40 9.4
19emb|AL603625.11| Human DNA sequence from clone RP11-385E2 on chr... 40 9.4
20gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.4
21ref|NM_058072.3| Drosophila melanogaster Rab escort protein CG84... 40 9.4
22gb|AY061052.1| Drosophila melanogaster LD02194 full length cDNA 40 9.4
23gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56... 40 9.4
24gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
25dbj|AK044167.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 9.4
26dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
28gb|AC154720.2| Mus musculus BAC clone RP24-371C21 from chromosom... 40 9.4
29ref|XM_222205.3| PREDICTED: Rattus norvegicus similar to KIAA061... 40 9.4
30gb|AC153847.7| Mus musculus 10 BAC RP23-286J11 (Roswell Park Can... 40 9.4
31gb|BC072559.1| Mus musculus expressed sequence AU042671, mRNA (c... 40 9.4
32emb|AL731782.15| Mouse DNA sequence from clone RP23-180G3 on chr... 40 9.4
33dbj|AK122008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
34gb|AY015224.1| Podolobium ilicifolium internal transcribed space... 40 9.4
35gb|AY015223.1| Podolobium alpestre internal transcribed spacer 1... 40 9.4
36gb|AY015222.1| Podolobium aestivum internal transcribed spacer 1... 40 9.4
37dbj|AK065282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
38gb|AF105063.1|AF105063 Drosophila melanogaster Rab escort protei... 40 9.4
39gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55... 40 9.4
40gb|AC004311.1|AC004311 Drosophila melanogaster DNA sequence (P1 ... 40 9.4
41emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 40 9.4
42emb|CT025625.9| Mouse DNA sequence from clone RP23-449N15 on chr... 40 9.4
43emb|AL669939.9| Mouse DNA sequence from clone RP23-213O8 on chro... 40 9.4 
>ref|XM_480197.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1241

 Score =  232 bits (117), Expect = 1e-57
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                        
Query: 490  tcagaggattgtgcatctgtttctttgttctgcgggagatatcgtggcctgttgaaacct 549
            ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| |||||
Sbjct: 1100 tcagaggattgcgcatcggtttctttgttctgcgggagatattgtcgcctgttggaacct 1041

                                                                        
Query: 550  gtttggatcaaaggaatccaccccatacttgtccctcattctttggctccatgcatcgtt 609
            ||||||||||||||  |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1040 gtttggatcaaaggtgtccaccccatacttttctctcattctttggctccacgcatcgtt 981

                                                                        
Query: 610  cctgattggacggtagtcaagattgggcaccctggggtcggtaacagtttgcttattcac 669
             | |||||||||||||||||| ||||||||||| ||||| | ||||| |||||| |||||
Sbjct: 980  tcggattggacggtagtcaaggttgggcaccctagggtcagcaacaggttgcttgttcac 921

                     
Query: 670  caacggctg 678
            |||||||||
Sbjct: 920  caacggctg 912
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>ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.115 mRNA
          Length = 1341

 Score =  232 bits (117), Expect = 1e-57
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                        
Query: 490  tcagaggattgtgcatctgtttctttgttctgcgggagatatcgtggcctgttgaaacct 549
            ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| |||||
Sbjct: 1103 tcagaggattgcgcatcggtttctttgttctgcgggagatattgtcgcctgttggaacct 1044

                                                                        
Query: 550  gtttggatcaaaggaatccaccccatacttgtccctcattctttggctccatgcatcgtt 609
            ||||||||||||||  |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1043 gtttggatcaaaggtgtccaccccatacttttctctcattctttggctccacgcatcgtt 984

                                                                        
Query: 610  cctgattggacggtagtcaagattgggcaccctggggtcggtaacagtttgcttattcac 669
             | |||||||||||||||||| ||||||||||| ||||| | ||||| |||||| |||||
Sbjct: 983  tcggattggacggtagtcaaggttgggcaccctagggtcagcaacaggttgcttgttcac 924

                     
Query: 670  caacggctg 678
            |||||||||
Sbjct: 923  caacggctg 915
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>dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full
            insert sequence
          Length = 1340

 Score =  232 bits (117), Expect = 1e-57
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                        
Query: 490  tcagaggattgtgcatctgtttctttgttctgcgggagatatcgtggcctgttgaaacct 549
            ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| |||||
Sbjct: 1102 tcagaggattgcgcatcggtttctttgttctgcgggagatattgtcgcctgttggaacct 1043

                                                                        
Query: 550  gtttggatcaaaggaatccaccccatacttgtccctcattctttggctccatgcatcgtt 609
            ||||||||||||||  |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1042 gtttggatcaaaggtgtccaccccatacttttctctcattctttggctccacgcatcgtt 983

                                                                        
Query: 610  cctgattggacggtagtcaagattgggcaccctggggtcggtaacagtttgcttattcac 669
             | |||||||||||||||||| ||||||||||| ||||| | ||||| |||||| |||||
Sbjct: 982  tcggattggacggtagtcaaggttgggcaccctagggtcagcaacaggttgcttgttcac 923

                     
Query: 670  caacggctg 678
            |||||||||
Sbjct: 922  caacggctg 914
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>dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K06, full
            insert sequence
          Length = 1242

 Score =  232 bits (117), Expect = 1e-57
 Identities = 171/189 (90%)
 Strand = Plus / Minus

                                                                        
Query: 490  tcagaggattgtgcatctgtttctttgttctgcgggagatatcgtggcctgttgaaacct 549
            ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| |||||
Sbjct: 1101 tcagaggattgcgcatcggtttctttgttctgcgggagatattgtcgcctgttggaacct 1042

                                                                        
Query: 550  gtttggatcaaaggaatccaccccatacttgtccctcattctttggctccatgcatcgtt 609
            ||||||||||||||  |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1041 gtttggatcaaaggtgtccaccccatacttttctctcattctttggctccacgcatcgtt 982

                                                                        
Query: 610  cctgattggacggtagtcaagattgggcaccctggggtcggtaacagtttgcttattcac 669
             | |||||||||||||||||| ||||||||||| ||||| | ||||| |||||| |||||
Sbjct: 981  tcggattggacggtagtcaaggttgggcaccctagggtcagcaacaggttgcttgttcac 922

                     
Query: 670  caacggctg 678
            |||||||||
Sbjct: 921  caacggctg 913
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                           
Query: 490     tcagaggattgtgcatctgtttctttgttctgcgggagatatcgtggcctgttgaaacct 549
               ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| |||||
Sbjct: 3440355 tcagaggattgcgcatcggtttctttgttctgcgggagatattgtcgcctgttggaacct 3440296

                                            
Query: 550     gtttggatcaaaggaatccaccccatact 578
               ||||||||||||||  |||||||||||||
Sbjct: 3440295 gtttggatcaaaggtgtccaccccatact 3440267



 Score =  117 bits (59), Expect = 5e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                           
Query: 584     ctcattctttggctccatgcatcgttcctgattggacggtagtcaagattgggcaccctg 643
               ||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||| 
Sbjct: 3440173 ctcattctttggctccacgcatcgtttcggattggacggtagtcaaggttgggcacccta 3440114

                                                  
Query: 644     gggtcggtaacagtttgcttattcaccaacggctg 678
               ||||| | ||||| |||||| ||||||||||||||
Sbjct: 3440113 gggtcagcaacaggttgcttgttcaccaacggctg 3440079
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498E12
          Length = 153523

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                         
Query: 490   tcagaggattgtgcatctgtttctttgttctgcgggagatatcgtggcctgttgaaacct 549
             ||||||||||| ||||| |||||||||||||||||||||||| || |||||||| |||||
Sbjct: 73774 tcagaggattgcgcatcggtttctttgttctgcgggagatattgtcgcctgttggaacct 73715

                                          
Query: 550   gtttggatcaaaggaatccaccccatact 578
             ||||||||||||||  |||||||||||||
Sbjct: 73714 gtttggatcaaaggtgtccaccccatact 73686



 Score =  117 bits (59), Expect = 5e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                         
Query: 584   ctcattctttggctccatgcatcgttcctgattggacggtagtcaagattgggcaccctg 643
             ||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||| 
Sbjct: 73592 ctcattctttggctccacgcatcgtttcggattggacggtagtcaaggttgggcacccta 73533

                                                
Query: 644   gggtcggtaacagtttgcttattcaccaacggctg 678
             ||||| | ||||| |||||| ||||||||||||||
Sbjct: 73532 gggtcagcaacaggttgcttgttcaccaacggctg 73498
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>emb|AL929265.6| Mouse DNA sequence from clone RP23-316D8 on chromosome 2, complete
             sequence
          Length = 178882

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 312   gactatgtaaatgaaagaact 332
             |||||||||||||||||||||
Sbjct: 79501 gactatgtaaatgaaagaact 79521
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>gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosome 6, complete sequence
          Length = 201337

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 650   gtaacagtttgcttattcaccaac 673
             ||||||| ||||||||||||||||
Sbjct: 67056 gtaacagcttgcttattcaccaac 67079
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>gb|AC135669.5| Mus musculus BAC clone RP23-360L22 from chromosome 10, complete sequence
          Length = 194398

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    gctggctgtgaattcagaga 445
              ||||||||||||||||||||
Sbjct: 138910 gctggctgtgaattcagaga 138929
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 487      gcatcagaggattgtgcatctgtt 510
                |||||||||||||||||| |||||
Sbjct: 14208676 gcatcagaggattgtgcacctgtt 14208653
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>ref|XM_001000155.1| PREDICTED: Mus musculus expressed sequence AU042671, transcript
            variant 2 (AU042671), mRNA
          Length = 3561

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ccaagcttcagaggattgca 485
            ||||||||||||||||||||
Sbjct: 2878 ccaagcttcagaggattgca 2897
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>ref|XM_001003004.1| PREDICTED: Mus musculus similar to expressed sequence AU042671,
            transcript variant 2 (LOC667392), mRNA
          Length = 3561

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ccaagcttcagaggattgca 485
            ||||||||||||||||||||
Sbjct: 2878 ccaagcttcagaggattgca 2897
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>ref|XM_994240.1| PREDICTED: Mus musculus similar to expressed sequence AU042671,
            transcript variant 2 (LOC676119), mRNA
          Length = 3561

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ccaagcttcagaggattgca 485
            ||||||||||||||||||||
Sbjct: 2878 ccaagcttcagaggattgca 2897
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>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence
          Length = 187269

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ccaagcttcagaggattgca 485
             ||||||||||||||||||||
Sbjct: 88333 ccaagcttcagaggattgca 88314
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>gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, complete sequence
          Length = 236895

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    caaaattaagttcaattatt 283
              ||||||||||||||||||||
Sbjct: 137669 caaaattaagttcaattatt 137688
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>emb|AJ012302.1|LDE012302 Lactobacillus delbrueckii pepX gene, partial
          Length = 2396

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 663  tattcaccaacggctgacgg 682
            ||||||||||||||||||||
Sbjct: 1712 tattcaccaacggctgacgg 1731
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>gb|AF496130.1| Lactobacillus delbrueckii subsp. lactis XAA-pro
           dipeptidyl-peptidase gene, partial cds
          Length = 446

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 663 tattcaccaacggctgacgg 682
           ||||||||||||||||||||
Sbjct: 386 tattcaccaacggctgacgg 405
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>emb|AL591215.12| Human DNA sequence from clone RP11-20D12 on chromosome 9 Contains
           the 3' end of a novel gene, possible ortholog of mouse
           RIKEN cDNA 1700028P14 gene, complete sequence
          Length = 154592

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 265 aaaattaagttcaattattgcaaa 288
           |||||||||||||||||| |||||
Sbjct: 950 aaaattaagttcaattatggcaaa 973
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>emb|AL603625.11| Human DNA sequence from clone RP11-385E2 on chromosome 9, complete
             sequence
          Length = 13392

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 265   aaaattaagttcaattattgcaaa 288
             |||||||||||||||||| |||||
Sbjct: 12342 aaaattaagttcaattatggcaaa 12365
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>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0012F18, from chromosome 3, complete sequence
          Length = 122903

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   gcatcagaggattgtgcatctgtt 510
             |||||||||||||||||| |||||
Sbjct: 82967 gcatcagaggattgtgcacctgtt 82944
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>ref|NM_058072.3| Drosophila melanogaster Rab escort protein CG8432-RA (Rep), mRNA
          Length = 1919

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 494 aggattgtgcatctgtttct 513
           ||||||||||||||||||||
Sbjct: 401 aggattgtgcatctgtttct 382
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>gb|AY061052.1| Drosophila melanogaster LD02194 full length cDNA
          Length = 1884

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 494 aggattgtgcatctgtttct 513
           ||||||||||||||||||||
Sbjct: 347 aggattgtgcatctgtttct 328
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>gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56D-56E, BAC clone
              BACR25K02, complete sequence
          Length = 173347

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    aggattgtgcatctgtttct 513
              ||||||||||||||||||||
Sbjct: 117674 aggattgtgcatctgtttct 117655
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>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAb0012F18, complete sequence
          Length = 122159

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   gcatcagaggattgtgcatctgtt 510
             |||||||||||||||||| |||||
Sbjct: 20064 gcatcagaggattgtgcacctgtt 20041
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>dbj|AK044167.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830097B02 product:hypothetical protein,
            full insert sequence
          Length = 2388

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ccaagcttcagaggattgca 485
            ||||||||||||||||||||
Sbjct: 1193 ccaagcttcagaggattgca 1212
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 415      catgttgcacagctggctgt 434
                ||||||||||||||||||||
Sbjct: 13744079 catgttgcacagctggctgt 13744098
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 487      gcatcagaggattgtgcatctgtt 510
                |||||||||||||||||| |||||
Sbjct: 14203651 gcatcagaggattgtgcacctgtt 14203628
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>gb|AC154720.2| Mus musculus BAC clone RP24-371C21 from chromosome 12, complete sequence
          Length = 167416

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    atttcagactatgtaaatga 325
              ||||||||||||||||||||
Sbjct: 132718 atttcagactatgtaaatga 132699
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>ref|XM_222205.3| PREDICTED: Rattus norvegicus similar to KIAA0614 protein (predicted)
            (LOC304503), mRNA
          Length = 13601

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ccaagcttcagaggattgca 485
            ||||||||||||||||||||
Sbjct: 6191 ccaagcttcagaggattgca 6210
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>gb|AC153847.7| Mus musculus 10 BAC RP23-286J11 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 187753

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  gctggctgtgaattcagaga 445
            ||||||||||||||||||||
Sbjct: 6172 gctggctgtgaattcagaga 6191
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>gb|BC072559.1| Mus musculus expressed sequence AU042671, mRNA (cDNA clone
            IMAGE:5685802), partial cds
          Length = 3119

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  ccaagcttcagaggattgca 485
            ||||||||||||||||||||
Sbjct: 2420 ccaagcttcagaggattgca 2439
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>emb|AL731782.15| Mouse DNA sequence from clone RP23-180G3 on chromosome X, complete
              sequence
          Length = 209800

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ttcattgcacaatgcaaatc 195
              ||||||||||||||||||||
Sbjct: 132956 ttcattgcacaatgcaaatc 132975
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>dbj|AK122008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111D01, full
            insert sequence
          Length = 2399

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 487  gcatcagaggattgtgcatctgtt 510
            |||||||||||||||||| |||||
Sbjct: 2153 gcatcagaggattgtgcacctgtt 2130
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>gb|AY015224.1| Podolobium ilicifolium internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 568

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 catcctagctaaaacacaat 129
           ||||||||||||||||||||
Sbjct: 74  catcctagctaaaacacaat 93
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>gb|AY015223.1| Podolobium alpestre internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 567

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 catcctagctaaaacacaat 129
           ||||||||||||||||||||
Sbjct: 75  catcctagctaaaacacaat 94
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>gb|AY015222.1| Podolobium aestivum internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene, complete sequence;
           and internal transcribed spacer 2, partial sequence
          Length = 569

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 catcctagctaaaacacaat 129
           ||||||||||||||||||||
Sbjct: 75  catcctagctaaaacacaat 94
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>dbj|AK065282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M02, full
            insert sequence
          Length = 2733

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 487  gcatcagaggattgtgcatctgtt 510
            |||||||||||||||||| |||||
Sbjct: 2486 gcatcagaggattgtgcacctgtt 2463
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>gb|AF105063.1|AF105063 Drosophila melanogaster Rab escort protein homolog, complete cds
          Length = 1955

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 494 aggattgtgcatctgtttct 513
           ||||||||||||||||||||
Sbjct: 398 aggattgtgcatctgtttct 379
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>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete
             sequence
          Length = 248096

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   aggattgtgcatctgtttct 513
             ||||||||||||||||||||
Sbjct: 36760 aggattgtgcatctgtttct 36741
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>gb|AC004311.1|AC004311 Drosophila melanogaster DNA sequence (P1 DS07774 (D203)), complete
             sequence
          Length = 45105

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   aggattgtgcatctgtttct 513
             ||||||||||||||||||||
Sbjct: 22155 aggattgtgcatctgtttct 22136
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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
              complete sequence
          Length = 187359

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    catgttgcacagctggctgt 434
              ||||||||||||||||||||
Sbjct: 138687 catgttgcacagctggctgt 138706
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>emb|CT025625.9| Mouse DNA sequence from clone RP23-449N15 on chromosome 12, complete
             sequence
          Length = 188300

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   atttcagactatgtaaatga 325
             ||||||||||||||||||||
Sbjct: 80389 atttcagactatgtaaatga 80408
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>emb|AL669939.9| Mouse DNA sequence from clone RP23-213O8 on chromosome X, complete
             sequence
          Length = 178116

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   gctggctgtgaattcagaga 445
             ||||||||||||||||||||
Sbjct: 15306 gctggctgtgaattcagaga 15287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,345,551
Number of Sequences: 3902068
Number of extensions: 5345551
Number of successful extensions: 91023
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90843
Number of HSP's gapped (non-prelim): 180
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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