| Clone Name | rbasd27i21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1311 Score = 335 bits (169), Expect = 1e-88 Identities = 244/269 (90%) Strand = Plus / Minus Query: 421 accagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgcagcctgcat 480 |||||||| |||||||||||| ||||||||||||| || | ||||||||||| |||||| Sbjct: 1241 accagccttttgatgtcatccaaggaatgagaagcgcttagagttattcgcaacctgcac 1182 Query: 481 gagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatcttagcata 540 ||||| | || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1181 gagttttgtggtactgtgggtggtcgaattggtgtaacatgaaatccagatcttagcata 1122 Query: 541 tgcctgccagccctaagtgcagcttcttcacttcctactactatggaaattatgggacta 600 |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct: 1121 tgcctgccagccctaagtgctgcttcttcgcttccaactactatggaaattatgggacta 1062 Query: 601 gttatattgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctc 660 |||| | |||||| ||||| || ||||||||||||||||||||||||| || ||||||| Sbjct: 1061 gttaagtcgagtttggtcaaagaagcaaaatactgcacatgcctccagatcactgatctc 1002 Query: 661 cgccatctttccttccttgagacatggag 689 |||||||| |||||| ||||||||||||| Sbjct: 1001 cgccatctctccttctttgagacatggag 973
>dbj|AK100689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114D10, full insert sequence Length = 3206 Score = 335 bits (169), Expect = 1e-88 Identities = 244/269 (90%) Strand = Plus / Minus Query: 421 accagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgcagcctgcat 480 |||||||| |||||||||||| ||||||||||||| || | ||||||||||| |||||| Sbjct: 2893 accagccttttgatgtcatccaaggaatgagaagcgcttagagttattcgcaacctgcac 2834 Query: 481 gagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatcttagcata 540 ||||| | || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2833 gagttttgtggtactgtgggtggtcgaattggtgtaacatgaaatccagatcttagcata 2774 Query: 541 tgcctgccagccctaagtgcagcttcttcacttcctactactatggaaattatgggacta 600 |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct: 2773 tgcctgccagccctaagtgctgcttcttcgcttccaactactatggaaattatgggacta 2714 Query: 601 gttatattgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctc 660 |||| | |||||| ||||| || ||||||||||||||||||||||||| || ||||||| Sbjct: 2713 gttaagtcgagtttggtcaaagaagcaaaatactgcacatgcctccagatcactgatctc 2654 Query: 661 cgccatctttccttccttgagacatggag 689 |||||||| |||||| ||||||||||||| Sbjct: 2653 cgccatctctccttctttgagacatggag 2625
>dbj|AK069723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A08, full insert sequence Length = 1699 Score = 335 bits (169), Expect = 1e-88 Identities = 244/269 (90%) Strand = Plus / Minus Query: 421 accagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgcagcctgcat 480 |||||||| |||||||||||| ||||||||||||| || | ||||||||||| |||||| Sbjct: 1367 accagccttttgatgtcatccaaggaatgagaagcgcttagagttattcgcaacctgcac 1308 Query: 481 gagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatcttagcata 540 ||||| | || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 gagttttgtggtactgtgggtggtcgaattggtgtaacatgaaatccagatcttagcata 1248 Query: 541 tgcctgccagccctaagtgcagcttcttcacttcctactactatggaaattatgggacta 600 |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct: 1247 tgcctgccagccctaagtgctgcttcttcgcttccaactactatggaaattatgggacta 1188 Query: 601 gttatattgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctc 660 |||| | |||||| ||||| || ||||||||||||||||||||||||| || ||||||| Sbjct: 1187 gttaagtcgagtttggtcaaagaagcaaaatactgcacatgcctccagatcactgatctc 1128 Query: 661 cgccatctttccttccttgagacatggag 689 |||||||| |||||| ||||||||||||| Sbjct: 1127 cgccatctctccttctttgagacatggag 1099
>dbj|AK071526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J24, full insert sequence Length = 1794 Score = 313 bits (158), Expect = 4e-82 Identities = 245/274 (89%) Strand = Plus / Minus Query: 412 agcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgc 471 ||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 1536 agcgcatccaccagccttttgatgtcatccgaagaatgagaagcactgagagttattcgc 1477 Query: 472 agcctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagat 531 | |||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||| Sbjct: 1476 aacctgcatgagttgggcggtactgtgggtggtcggattggcgtgacatgaaatccagat 1417 Query: 532 cttagcatatgcctgccagccctaagtgcagcttcttcacttcctactactatggaaatt 591 |||||||||| ||| ||||| |||||||| |||| ||||||||| ||||| ||||||||| Sbjct: 1416 cttagcatatcccttccagctctaagtgctgctttttcacttccaactacaatggaaatt 1357 Query: 592 atgggactagttatattgagtttagtcaaggatgcaaaatactgcacatgcctccagacc 651 |||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||||| | Sbjct: 1356 atgggacttgttatgttgagttttgtcaaagaggcaaaatactgcacatgcctccagatc 1297 Query: 652 aatgatctccgccatctttccttccttgagacat 685 | ||||||||||||||| |||| |||||| |||| Sbjct: 1296 actgatctccgccatctctcctcccttgatacat 1263
>ref|NM_197743.1| Oryza sativa (japonica cultivar-group) putative 8-amino-7-oxononanoate synthase (OSJNBb0089A17.1), mRNA Length = 1376 Score = 190 bits (96), Expect = 4e-45 Identities = 147/164 (89%) Strand = Plus / Minus Query: 412 agcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgc 471 ||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 1133 agcgcatccaccagccttttgatgtcatccgaagaatgagaagcactgagagttattcgc 1074 Query: 472 agcctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagat 531 | |||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||| Sbjct: 1073 aacctgcatgagttgggcggtactgtgggtggtcggattggcgtgacatgaaatccagat 1014 Query: 532 cttagcatatgcctgccagccctaagtgcagcttcttcacttcc 575 |||||||||| ||| ||||| |||||||| |||| ||||||||| Sbjct: 1013 cttagcatatcccttccagctctaagtgctgctttttcacttcc 970
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 188 bits (95), Expect = 2e-44 Identities = 134/147 (91%) Strand = Plus / Minus Query: 543 cctgccagccctaagtgcagcttcttcacttcctactactatggaaattatgggactagt 602 |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 30710117 cctgccagccctaagtgctgcttcttcgcttccaactactatggaaattatgggactagt 30710058 Query: 603 tatattgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccg 662 || | |||||| ||||| || ||||||||||||||||||||||||| || ||||||||| Sbjct: 30710057 taagtcgagtttggtcaaagaagcaaaatactgcacatgcctccagatcactgatctccg 30709998 Query: 663 ccatctttccttccttgagacatggag 689 |||||| |||||| ||||||||||||| Sbjct: 30709997 ccatctctccttctttgagacatggag 30709971 Score = 101 bits (51), Expect = 3e-18 Identities = 51/51 (100%) Strand = Plus / Minus Query: 496 gtgggtggtcgaattggtgtaacatgaaatccagatcttagcatatgcctg 546 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30710241 gtgggtggtcgaattggtgtaacatgaaatccagatcttagcatatgcctg 30710191 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 421 accagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgcagcctg 477 |||||||| |||||||||||| ||||||||||||| || | ||||||||||| |||| Sbjct: 30710613 accagccttttgatgtcatccaaggaatgagaagcgcttagagttattcgcaacctg 30710557
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 188 bits (95), Expect = 2e-44 Identities = 134/147 (91%) Strand = Plus / Minus Query: 543 cctgccagccctaagtgcagcttcttcacttcctactactatggaaattatgggactagt 602 |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 152394 cctgccagccctaagtgctgcttcttcgcttccaactactatggaaattatgggactagt 152335 Query: 603 tatattgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccg 662 || | |||||| ||||| || ||||||||||||||||||||||||| || ||||||||| Sbjct: 152334 taagtcgagtttggtcaaagaagcaaaatactgcacatgcctccagatcactgatctccg 152275 Query: 663 ccatctttccttccttgagacatggag 689 |||||| |||||| ||||||||||||| Sbjct: 152274 ccatctctccttctttgagacatggag 152248 Score = 101 bits (51), Expect = 3e-18 Identities = 51/51 (100%) Strand = Plus / Minus Query: 496 gtgggtggtcgaattggtgtaacatgaaatccagatcttagcatatgcctg 546 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152518 gtgggtggtcgaattggtgtaacatgaaatccagatcttagcatatgcctg 152468 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 421 accagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgcagcctg 477 |||||||| |||||||||||| ||||||||||||| || | ||||||||||| |||| Sbjct: 152890 accagccttttgatgtcatccaaggaatgagaagcgcttagagttattcgcaacctg 152834
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 157 bits (79), Expect = 6e-35 Identities = 124/139 (89%) Strand = Plus / Plus Query: 547 ccagccctaagtgcagcttcttcacttcctactactatggaaattatgggactagttata 606 ||||| |||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 21309 ccagctctaagtgctgctttttcacttccaactacaatggaaattatgggacttgttatg 21368 Query: 607 ttgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccgccat 666 |||||||| ||||| || ||||||||||||||||||||||||| || ||||||||||||| Sbjct: 21369 ttgagttttgtcaaagaggcaaaatactgcacatgcctccagatcactgatctccgccat 21428 Query: 667 ctttccttccttgagacat 685 || |||| |||||| |||| Sbjct: 21429 ctctcctcccttgatacat 21447 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Plus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 |||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| Sbjct: 21158 cctgcatgagttgggcggtactgtgggtggtcggattggcgtgacatgaaatccagatct 21217 Query: 534 tagcatatgcctgc 547 |||||||| ||||| Sbjct: 21218 tagcatatccctgc 21231 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 412 agcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgc 471 ||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 20779 agcgcatccaccagccttttgatgtcatccgaagaatgagaagcactgagagttattcgc 20838 Query: 472 agcctgca 479 | |||||| Sbjct: 20839 aacctgca 20846
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 157 bits (79), Expect = 6e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 547 ccagccctaagtgcagcttcttcacttcctactactatggaaattatgggactagttata 606 ||||| |||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 20652 ccagctctaagtgctgctttttcacttccaactacaatggaaattatgggacttgttatg 20593 Query: 607 ttgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccgccat 666 |||||||| ||||| || ||||||||||||||||||||||||| || ||||||||||||| Sbjct: 20592 ttgagttttgtcaaagaggcaaaatactgcacatgcctccagatcactgatctccgccat 20533 Query: 667 ctttccttccttgagacat 685 || |||| |||||| |||| Sbjct: 20532 ctctcctcccttgatacat 20514 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 |||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| Sbjct: 20803 cctgcatgagttgggcggtactgtgggtggtcggattggcgtgacatgaaatccagatct 20744 Query: 534 tagcatatgcctgc 547 |||||||| ||||| Sbjct: 20743 tagcatatccctgc 20730 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 412 agcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgc 471 ||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 21182 agcgcatccaccagccttttgatgtcatccgaagaatgagaagcactgagagttattcgc 21123 Query: 472 agcctgca 479 | |||||| Sbjct: 21122 aacctgca 21115
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 157 bits (79), Expect = 6e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 547 ccagccctaagtgcagcttcttcacttcctactactatggaaattatgggactagttata 606 ||||| |||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 21588748 ccagctctaagtgctgctttttcacttccaactacaatggaaattatgggacttgttatg 21588689 Query: 607 ttgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccgccat 666 |||||||| ||||| || ||||||||||||||||||||||||| || ||||||||||||| Sbjct: 21588688 ttgagttttgtcaaagaggcaaaatactgcacatgcctccagatcactgatctccgccat 21588629 Query: 667 ctttccttccttgagacat 685 || |||| |||||| |||| Sbjct: 21588628 ctctcctcccttgatacat 21588610 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 |||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| Sbjct: 21588899 cctgcatgagttgggcggtactgtgggtggtcggattggcgtgacatgaaatccagatct 21588840 Query: 534 tagcatatgcctgc 547 |||||||| ||||| Sbjct: 21588839 tagcatatccctgc 21588826 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 412 agcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgc 471 ||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 21589278 agcgcatccaccagccttttgatgtcatccgaagaatgagaagcactgagagttattcgc 21589219 Query: 472 agcctgca 479 | |||||| Sbjct: 21589218 aacctgca 21589211
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 157 bits (79), Expect = 6e-35 Identities = 124/139 (89%) Strand = Plus / Minus Query: 547 ccagccctaagtgcagcttcttcacttcctactactatggaaattatgggactagttata 606 ||||| |||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||| Sbjct: 21600411 ccagctctaagtgctgctttttcacttccaactacaatggaaattatgggacttgttatg 21600352 Query: 607 ttgagtttagtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccgccat 666 |||||||| ||||| || ||||||||||||||||||||||||| || ||||||||||||| Sbjct: 21600351 ttgagttttgtcaaagaggcaaaatactgcacatgcctccagatcactgatctccgccat 21600292 Query: 667 ctttccttccttgagacat 685 || |||| |||||| |||| Sbjct: 21600291 ctctcctcccttgatacat 21600273 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 |||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| Sbjct: 21600562 cctgcatgagttgggcggtactgtgggtggtcggattggcgtgacatgaaatccagatct 21600503 Query: 534 tagcatatgcctgc 547 |||||||| ||||| Sbjct: 21600502 tagcatatccctgc 21600489 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 412 agcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactcaaagttattcgc 471 ||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 21600941 agcgcatccaccagccttttgatgtcatccgaagaatgagaagcactgagagttattcgc 21600882 Query: 472 agcctgca 479 | |||||| Sbjct: 21600881 aacctgca 21600874
>gb|DQ428302.1| Sorghum propinquum locus PRC1072 genomic sequence Length = 503 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 61.9 bits (31), Expect = 3e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| |||||||| |||||||| ||||||||||| ||||| || Sbjct: 350 agccagggtgtgagtgcatcaaccagccttttgatgtcctccgaggaatgggaagcgcta 291 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 290 agagtgattctcagcctgc 272
>gb|DQ428301.1| Sorghum bicolor voucher PI585454 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428300.1| Sorghum bicolor voucher PI267539 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428299.1| Sorghum bicolor voucher PI267408 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428298.1| Sorghum bicolor voucher PI221607 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428297.1| Sorghum bicolor voucher PI152702 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428296.1| Sorghum bicolor voucher NSL92371 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428295.1| Sorghum bicolor voucher NSL87902b locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428294.1| Sorghum bicolor voucher NSL87902a locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 61.9 bits (31), Expect = 3e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| |||||||| |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagccttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428293.1| Sorghum bicolor voucher NSL87666 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428292.1| Sorghum bicolor voucher NSL77034 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428291.1| Sorghum bicolor voucher NSL56174 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428290.1| Sorghum bicolor voucher NSL56003 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428289.1| Sorghum bicolor voucher NSL55243 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 61.9 bits (31), Expect = 3e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| |||||||| |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagccttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428288.1| Sorghum bicolor voucher NSL51365 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428287.1| Sorghum bicolor voucher NSL51030 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428286.1| Sorghum bicolor voucher NSL50875 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|DQ428285.1| Sorghum bicolor voucher BTx623 locus PRC1072 genomic sequence Length = 502 Score = 113 bits (57), Expect = 8e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 474 cctgcatgagttgggcggcacggtgggtggtcgaattggtgtaacatgaaatccagatct 533 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 cctgcatgagttgggtggcactgtgggtggtcggattggtgtaacatgaaatccagatct 65 Query: 534 tagcatatgcctg 546 ||||| ||||||| Sbjct: 64 tagcaaatgcctg 52 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 400 agccagggagtgagcgcattgaccagcctcttgatgtcatccgaggaatgagaagcactc 459 |||||||| ||||| |||| ||||| || |||||||| ||||||||||| ||||| || Sbjct: 349 agccagggtgtgagtgcatcaaccagtcttttgatgtcctccgaggaatgggaagcgcta 290 Query: 460 aaagttattcgcagcctgc 478 | ||| |||| |||||||| Sbjct: 289 agagtgattctcagcctgc 271
>gb|AY110874.1| Zea mays CL1004_1 mRNA sequence Length = 844 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 616 gtcaaggatgcaaaatactgcacatgcctccagaccaatgatctccgccatctttccttc 675 ||||| || ||||||||||||||||||||||||| || ||||||||||||| | ||||| Sbjct: 840 gtcaatgaggcaaaatactgcacatgcctccagatcactgatctccgccatgtctcctta 781 Query: 676 cttgagacat 685 || ||||||| Sbjct: 780 ctcgagacat 771
>gb|AC102426.6| Mus musculus chromosome 1, clone RP24-88A10, complete sequence Length = 192016 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 tgaaatggacacaaatgatcac 229 |||||||||||||||||||||| Sbjct: 81209 tgaaatggacacaaatgatcac 81188
>gb|AC158524.2| Mus musculus BAC clone RP23-377I1 from chromosome 13, complete sequence Length = 191904 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 555 aagtgcagcttcttcacttcct 576 |||||||||||||||||||||| Sbjct: 104908 aagtgcagcttcttcacttcct 104887
>emb|AL671926.11| Mouse DNA sequence from clone RP23-356J7 on chromosome X, complete sequence Length = 153310 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 663 ccatctttccttccttgagaca 684 |||||||||||||||||||||| Sbjct: 55638 ccatctttccttccttgagaca 55659
>ref|XM_468013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 600 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 gagaagcactcaaagttattc 469 ||||||||||||||||||||| Sbjct: 467 gagaagcactcaaagttattc 487
>gb|AC004874.1| Homo sapiens PAC clone RP4-744D13 from 7, complete sequence Length = 95983 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ccctccacaaaattctgtttg 384 ||||||||||||||||||||| Sbjct: 91942 ccctccacaaaattctgtttg 91962
>gb|AC112509.4| Homo sapiens 3 BAC RP11-428B17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110001 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 accatatataccaattatgga 190 ||||||||||||||||||||| Sbjct: 37063 accatatataccaattatgga 37083
>emb|BX901976.22| Zebrafish DNA sequence from clone DKEY-101P20 in linkage group 22, complete sequence Length = 201928 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 tgcatgagttgggcggcacgg 496 ||||||||||||||||||||| Sbjct: 124505 tgcatgagttgggcggcacgg 124525
>emb|CR749168.7| Zebrafish DNA sequence from clone DKEY-10G2 in linkage group 5, complete sequence Length = 161858 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 tgcatgagttgggcggcacgg 496 ||||||||||||||||||||| Sbjct: 36551 tgcatgagttgggcggcacgg 36571
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 ccagcctcttgatgtcatccg 442 ||||||||||||||||||||| Sbjct: 1543220 ccagcctcttgatgtcatccg 1543240
>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 208686 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 667 ctttccttccttgagacatgg 687 ||||||||||||||||||||| Sbjct: 170900 ctttccttccttgagacatgg 170880
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gaccatatataccaattatgg 189 ||||||||||||||||||||| Sbjct: 652734 gaccatatataccaattatgg 652714
>ref|XM_690816.1| PREDICTED: Danio rerio similar to zn-finger, CCHC type and RNA-directed DNA polymerase and Integrase, catalytic domain containing protein family member (1E419) (LOC567520), mRNA Length = 3795 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 tgcatgagttgggcggcacgg 496 ||||||||||||||||||||| Sbjct: 1916 tgcatgagttgggcggcacgg 1896
>ref|XM_687789.1| PREDICTED: Danio rerio similar to zn-finger, CCHC type and RNA-directed DNA polymerase and Integrase, catalytic domain containing protein family member (1E419) (LOC564455), mRNA Length = 3744 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 tgcatgagttgggcggcacgg 496 ||||||||||||||||||||| Sbjct: 1916 tgcatgagttgggcggcacgg 1896
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gagaagcactcaaagttattc 469 ||||||||||||||||||||| Sbjct: 32557285 gagaagcactcaaagttattc 32557265
>dbj|AP004058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1353_F08 Length = 101988 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gagaagcactcaaagttattc 469 ||||||||||||||||||||| Sbjct: 54258 gagaagcactcaaagttattc 54238
>gb|AC004813.2|AC004813 Homo sapiens clone 277F10, complete sequence Length = 108969 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 667 ctttccttccttgagacatgg 687 ||||||||||||||||||||| Sbjct: 23247 ctttccttccttgagacatgg 23227
>dbj|AP002026.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:429K21, complete sequence Length = 195389 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 aaatggacacaaatgatcacatcaa 234 ||||||||| ||||||||||||||| Sbjct: 107241 aaatggacagaaatgatcacatcaa 107217
>gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, complete sequence Length = 169265 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 aaatggacacaaatgatcacatcaa 234 ||||||||| ||||||||||||||| Sbjct: 86083 aaatggacaaaaatgatcacatcaa 86107
>ref|NM_116056.1| Arabidopsis thaliana ANAC066; transcription factor AT3G61910 (ANAC066) mRNA, complete cds Length = 1227 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acaagaccatatataccaat 184 |||||||||||||||||||| Sbjct: 337 acaagaccatatataccaat 356
>ref|XM_509515.1| PREDICTED: Pan troglodytes similar to solute carrier family 24 member 6; sodium/potassium/calcium exchanger (LOC452406), mRNA Length = 1892 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gtgtgaaatggacacaaatg 224 |||||||||||||||||||| Sbjct: 514 gtgtgaaatggacacaaatg 495
>ref|XM_473751.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 7941 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 aaattacccaaatccatctctaca 134 |||||||||| ||||||||||||| Sbjct: 5477 aaattacccatatccatctctaca 5454
>gb|AE017138.1| Yersinia pestis biovar Medievalis str. 91001 section 12 of 16 of the complete genome Length = 290924 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 acggtgggtggtcgaattgg 512 |||||||||||||||||||| Sbjct: 230859 acggtgggtggtcgaattgg 230840
>ref|XM_361611.1| Magnaporthe grisea 70-15 hypothetical protein (MG04085.4) partial mRNA Length = 2109 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 ccagcctcttgatgtcatccgagg 445 ||||||||| |||||||||||||| Sbjct: 1969 ccagcctctcgatgtcatccgagg 1946
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 acggtgggtggtcgaattgg 512 |||||||||||||||||||| Sbjct: 25011 acggtgggtggtcgaattgg 25030
>gb|AC147175.2| Xenopus tropicalis clone CH216-54E8, complete sequence Length = 187921 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 tgcaaaatactgcacatgcc 643 |||||||||||||||||||| Sbjct: 66992 tgcaaaatactgcacatgcc 67011
>gb|BC032397.1| Homo sapiens solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, mRNA (cDNA clone IMAGE:5196557), containing frame-shift errors Length = 1677 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gtgtgaaatggacacaaatg 224 |||||||||||||||||||| Sbjct: 204 gtgtgaaatggacacaaatg 185
>gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, complete sequence Length = 210962 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 atggacacaaatgatcacat 231 |||||||||||||||||||| Sbjct: 17084 atggacacaaatgatcacat 17065
>gb|AC010178.40| Homo sapiens 12 BAC RP11-303O9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177828 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gtgtgaaatggacacaaatg 224 |||||||||||||||||||| Sbjct: 94209 gtgtgaaatggacacaaatg 94190
>gb|AE004192.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 100 of 251 of the complete chromosome Length = 12891 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 ggcacggtgggtggtcgaat 509 |||||||||||||||||||| Sbjct: 3581 ggcacggtgggtggtcgaat 3562
>gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome 13, complete sequence Length = 237830 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 attctgtttggcatgtttgc 394 |||||||||||||||||||| Sbjct: 84179 attctgtttggcatgtttgc 84160
>emb|AL627233.9| Human DNA sequence from clone RP11-305I2 on chromosome X Contains the CYLC1 gene for cylicin, basic protein of sperm head cytoskeleton 1, complete sequence Length = 75523 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 618 caaggatgcaaaatactgca 637 |||||||||||||||||||| Sbjct: 36284 caaggatgcaaaatactgca 36303
>emb|AL662904.4| Human DNA sequence from clone RP11-157N3 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 111042 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 atataccaattatggaaacacttt 198 ||||||||||||||| |||||||| Sbjct: 24294 atataccaattatggtaacacttt 24317
>emb|AL593851.6| Human DNA sequence from clone RP11-415H23 on chromosome 9 Contains the GFI1B gene for growth factor independent 1B (potential regulator of CDKN1A, translocated in CML), the gene for a novel protein similar to eukaryotic translation elongation factor 1 alpha1 (EEF1A1), a pseudogene similar to part of zinc finger proteins and a novel gene, complete sequence Length = 69926 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 atgcctgccagccctaagtgcagc 563 |||||| ||||||||||||||||| Sbjct: 46953 atgcctcccagccctaagtgcagc 46976
>emb|AL512594.7| Human DNA sequence from clone RP11-549A6 on chromosome 9 Contains a pseudogene similar to part of a GTPase-activating protein, complete sequence Length = 166192 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 caaatccatctctacatcaa 138 |||||||||||||||||||| Sbjct: 9916 caaatccatctctacatcaa 9897
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 acggtgggtggtcgaattgg 512 |||||||||||||||||||| Sbjct: 4359832 acggtgggtggtcgaattgg 4359813
>emb|AL596187.15| Mouse DNA sequence from clone RP23-287H9 on chromosome 11 Contains part of a novel gene, the 5' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9) and a CpG island, complete sequence Length = 202358 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 gcaaaatactgcacatgcct 644 |||||||||||||||||||| Sbjct: 33804 gcaaaatactgcacatgcct 33823
>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14 Length = 142001 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 acaagaccatatataccaat 184 |||||||||||||||||||| Sbjct: 92568 acaagaccatatataccaat 92549
>emb|AJ414158.1| Yersinia pestis strain CO92 complete genome; segment 18/20 Length = 235050 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 acggtgggtggtcgaattgg 512 |||||||||||||||||||| Sbjct: 151219 acggtgggtggtcgaattgg 151200
>emb|AL672225.15| Mouse DNA sequence from clone RP23-384G1 on chromosome 11 Contains the 5' end of the Spnb2 gene for spectrin beta 2 and a CpG island, complete sequence Length = 172823 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 catagctctgctcagcatgc 363 |||||||||||||||||||| Sbjct: 65656 catagctctgctcagcatgc 65637
>emb|BX537319.9| Zebrafish DNA sequence from clone CH211-248N8 in linkage group 17, complete sequence Length = 48304 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 ttgggcggcacggtgggtgg 503 |||||||||||||||||||| Sbjct: 3127 ttgggcggcacggtgggtgg 3108
>emb|AJ224854.1|JST224854 Jaegerina stolonifera mitochondrial nad5 gene Length = 1935 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 cttcttcacttcctactact 582 |||||||||||||||||||| Sbjct: 1791 cttcttcacttcctactact 1810
>dbj|AK056179.1| Homo sapiens cDNA FLJ31617 fis, clone NT2RI2003051 Length = 2031 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gtgtgaaatggacacaaatg 224 |||||||||||||||||||| Sbjct: 492 gtgtgaaatggacacaaatg 473
>gb|AC104380.3| Homo sapiens chromosome 8, clone CTD-2342C1, complete sequence Length = 159643 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 aaatactgcacatgcctcca 647 |||||||||||||||||||| Sbjct: 65373 aaatactgcacatgcctcca 65392
>gb|AC008952.7| Homo sapiens chromosome 5 clone CTD-2337D22, complete sequence Length = 184194 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 612 tttagtcaaggatgcaaaatactg 635 |||| ||||||||||||||||||| Sbjct: 113936 tttaatcaaggatgcaaaatactg 113959
>gb|AC008838.6| Homo sapiens chromosome 5 clone CTD-2151B15, complete sequence Length = 128642 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 612 tttagtcaaggatgcaaaatactg 635 |||| ||||||||||||||||||| Sbjct: 72590 tttaatcaaggatgcaaaatactg 72567
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 aaattacccaaatccatctctaca 134 |||||||||| ||||||||||||| Sbjct: 30294485 aaattacccatatccatctctaca 30294462
>gb|AC105921.5| Homo sapiens BAC clone RP11-541F21 from 2, complete sequence Length = 188183 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 tcttagcatatgcctgccag 550 |||||||||||||||||||| Sbjct: 64933 tcttagcatatgcctgccag 64952
>gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, complete sequence Length = 204674 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 atggaaattacccaaatcca 126 |||||||||||||||||||| Sbjct: 125809 atggaaattacccaaatcca 125790
>gb|AY084323.1| Arabidopsis thaliana clone 103969 mRNA, complete sequence Length = 1227 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acaagaccatatataccaat 184 |||||||||||||||||||| Sbjct: 337 acaagaccatatataccaat 356
>gb|BC098360.1| Homo sapiens solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, mRNA (cDNA clone MGC:120605 IMAGE:40026360), complete cds Length = 2687 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gtgtgaaatggacacaaatg 224 |||||||||||||||||||| Sbjct: 247 gtgtgaaatggacacaaatg 228
>gb|AC154752.2| Mus musculus BAC clone RP24-402K18 from 16, complete sequence Length = 174112 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 atggacacaaatgatcacat 231 |||||||||||||||||||| Sbjct: 161462 atggacacaaatgatcacat 161443
>dbj|AP002979.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1057H12 Length = 153647 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 aaatactgcacatgcctcca 647 |||||||||||||||||||| Sbjct: 22463 aaatactgcacatgcctcca 22444
>gb|AC002120.1|AC002120 Homo sapiens chromosome 9q34, clone 182E8, complete sequence Length = 23536 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 atgcctgccagccctaagtgcagc 563 |||||| ||||||||||||||||| Sbjct: 5063 atgcctcccagccctaagtgcagc 5086
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 aaattacccaaatccatctctaca 134 |||||||||| ||||||||||||| Sbjct: 44381 aaattacccatatccatctctaca 44358
>dbj|AB079894.1| Sus scrofa gene for T-cell receptor beta-chain, Dbeta-1 to 3' End Vbeta region Length = 34575 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 gtcatccgaggaatgagaagcact 458 ||||||| |||||||||||||||| Sbjct: 20802 gtcatcccaggaatgagaagcact 20825 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,693,934 Number of Sequences: 3902068 Number of extensions: 5693934 Number of successful extensions: 100010 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99646 Number of HSP's gapped (non-prelim): 364 length of query: 693 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 670 effective length of database: 17,143,297,704 effective search space: 11486009461680 effective search space used: 11486009461680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)