ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA... 29 3.4
2B3A4_HUMAN (Q96Q91) Anion exchange protein 4 (Anion exchanger 4)... 28 7.5

>UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA replication|
           protein BSLF1)
          Length = 874

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 196 SKHVRTYVRRRXALAMHITHANVRTRMEHLLFFRWIGSP 80
           ++H+RTY  R   LA H+    ++ RME    + W   P
Sbjct: 312 AEHMRTYFTRETYLAEHVRVQQLKIRMEPPAPYTWDPDP 350



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>B3A4_HUMAN (Q96Q91) Anion exchange protein 4 (Anion exchanger 4) (Solute|
           carrier family 4 member 9) (Sodium bicarbonate
           cotransporter 5)
          Length = 983

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -1

Query: 198 KVSTYVRTYDDALHLPCISRMQTYVHAWNICYSFDGSGLLXVCVXFTWGFLAFFFG 31
           KV  Y   + DALHL C S +  Y++   +  +    GLL        G L  F G
Sbjct: 396 KVPWYPSDFLDALHLQCFSAV-LYIYLATVTNAITFGGLLGDATDGAQGVLESFLG 450


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,988,277
Number of Sequences: 219361
Number of extensions: 834692
Number of successful extensions: 1693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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