ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
2gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
5ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative... 103 4e-19
6gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small n... 103 4e-19
7gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small n... 103 4e-19
8gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small n... 103 4e-19
9dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
10dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
11dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
12gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 82 2e-12
13gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 82 2e-12
14gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 82 2e-12
15gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternative... 82 2e-12
16gb|AY108570.1| Zea mays PCO063456 mRNA sequence 82 2e-12
17emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on... 42 1.3
18emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (f... 42 1.3
19gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, comple... 40 5.1
20gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complet... 40 5.1
21gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, comple... 40 5.1
22emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in ... 40 5.1 
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0092N12, complete sequence
          Length = 109198

 Score =  105 bits (53), Expect = 1e-19
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Minus

                                                                         
Query: 128   aaaacttactgcagnaatcaagctncagncttt-tgctcttctgctgcttggtgatactg 186
             |||||||||||||| ||||||  | |||   || ||||| || || ||||||||||||||
Sbjct: 15486 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 15427

                                                                         
Query: 187   gtagncaccttcctcgtatgcctcaccttcctcagggccttcaggttctgcgttg---ng 243
             |||| ||||||| || |||||||| || || ||||||||||||||||||| ||||    |
Sbjct: 15426 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 15367

                                                   
Query: 244   ttgtgcctgatagtactcatgctcatgtctctttgagc 281
             |||   ||||||||||||||||||||||| ||||||||
Sbjct: 15366 ttgcatctgatagtactcatgctcatgtcgctttgagc 15329
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  105 bits (53), Expect = 1e-19
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 128    aaaacttactgcagnaatcaagctncagncttt-tgctcttctgctgcttggtgatactg 186
              |||||||||||||| ||||||  | |||   || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 187    gtagncaccttcctcgtatgcctcaccttcctcagggccttcaggttctgcgttg---ng 243
              |||| ||||||| || |||||||| || || ||||||||||||||||||| ||||    |
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 244    ttgtgcctgatagtactcatgctcatgtctctttgagc 281
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  105 bits (53), Expect = 1e-19
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 128    aaaacttactgcagnaatcaagctncagncttt-tgctcttctgctgcttggtgatactg 186
              |||||||||||||| ||||||  | |||   || ||||| || || ||||||||||||||
Sbjct: 987068 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987127

                                                                          
Query: 187    gtagncaccttcctcgtatgcctcaccttcctcagggccttcaggttctgcgttg---ng 243
              |||| ||||||| || |||||||| || || ||||||||||||||||||| ||||    |
Sbjct: 987128 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987187

                                                    
Query: 244    ttgtgcctgatagtactcatgctcatgtctctttgagc 281
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987188 ttgcatctgatagtactcatgctcatgtcgctttgagc 987225
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  105 bits (53), Expect = 1e-19
 Identities = 132/158 (83%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                          
Query: 128    aaaacttactgcagnaatcaagctncagncttt-tgctcttctgctgcttggtgatactg 186
              |||||||||||||| ||||||  | |||   || ||||| || || ||||||||||||||
Sbjct: 987065 aaaacttactgcagcaatcaaatttcagttattgtgctcatcagcagcttggtgatactg 987124

                                                                          
Query: 187    gtagncaccttcctcgtatgcctcaccttcctcagggccttcaggttctgcgttg---ng 243
              |||| ||||||| || |||||||| || || ||||||||||||||||||| ||||    |
Sbjct: 987125 gtagtcaccttcatcatatgcctcgccctcttcagggccttcaggttctgtgttgttagg 987184

                                                    
Query: 244    ttgtgcctgatagtactcatgctcatgtctctttgagc 281
              |||   ||||||||||||||||||||||| ||||||||
Sbjct: 987185 ttgcatctgatagtactcatgctcatgtcgctttgagc 987222
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>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear
            ribonucleoprotein (OSJNBa0092N12.2), mRNA
          Length = 1476

 Score =  103 bits (52), Expect = 4e-19
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
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>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 2 mRNA, complete
            cds, alternatively spliced
          Length = 3284

 Score =  103 bits (52), Expect = 4e-19
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||||| || |||||||| || || |||||||||||||||
Sbjct: 2924 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 2865

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 2864 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2813
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>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K splice variant 1 mRNA, complete
            cds, alternatively spliced
          Length = 3443

 Score =  103 bits (52), Expect = 4e-19
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||||| || |||||||| || || |||||||||||||||
Sbjct: 3083 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3024

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 3023 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2972
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>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
            ribonucleoprotein 70K mRNA, complete cds, alternatively
            spliced
          Length = 1815

 Score =  103 bits (52), Expect = 4e-19
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||||| || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
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>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full
            insert sequence
          Length = 3436

 Score =  103 bits (52), Expect = 4e-19
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||||| || |||||||| || || |||||||||||||||
Sbjct: 3094 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 3035

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 3034 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 2983
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>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full
            insert sequence
          Length = 1796

 Score =  103 bits (52), Expect = 4e-19
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||||| || |||||||| || || |||||||||||||||
Sbjct: 1454 gcttggtgatactggtagtcaccttcatcatatgcctcgccctcttcagggccttcaggt 1395

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1394 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1343
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>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full
            insert sequence
          Length = 1798

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 96/112 (85%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 173  gcttggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttcaggt 232
            |||||||||||||||||| ||||| | || |||||||| || || |||||||||||||||
Sbjct: 1455 gcttggtgatactggtagtcacctccatcatatgcctcgccctcttcagggccttcaggt 1396

                                                                
Query: 233  tctgcgttg---ngttgtgcctgatagtactcatgctcatgtctctttgagc 281
            |||| ||||    ||||   ||||||||||||||||||||||| ||||||||
Sbjct: 1395 tctgtgttgttaggttgcatctgatagtactcatgctcatgtcgctttgagc 1344
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>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3299

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 177  ggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttc 228
            |||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 3148 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3097
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>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3463

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 177  ggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttc 228
            |||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 3312 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 3261
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>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 1647

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 177  ggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttc 228
            |||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 1496 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1445
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>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced
          Length = 5550

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 177  ggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttc 228
            |||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 4751 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 4700
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>gb|AY108570.1| Zea mays PCO063456 mRNA sequence
          Length = 1603

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                
Query: 177  ggtgatactggtagncaccttcctcgtatgcctcaccttcctcagggccttc 228
            |||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 1214 ggtgatactggtagtcgccttcctcatatgcctcaccttcctcagggccttc 1163
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>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2,
             complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   agagccataatgcttcccata 378
             |||||||||||||||||||||
Sbjct: 81761 agagccataatgcttcccata 81741
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>emb|CR627316.1| Homo sapiens genomic DNA; cDNA DKFZp686O11128 (from clone
            DKFZp686O11128)
          Length = 4350

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  agagccataatgcttcccata 378
            |||||||||||||||||||||
Sbjct: 2627 agagccataatgcttcccata 2607
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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   ttgtgttgctcatgctggtt 357
             ||||||||||||||||||||
Sbjct: 71056 ttgtgttgctcatgctggtt 71075
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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 338  ttgtgttgctcatgctggtt 357
            ||||||||||||||||||||
Sbjct: 9527 ttgtgttgctcatgctggtt 9546
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>gb|AC112229.4| Homo sapiens BAC clone RP13-1039J1 from 2, complete sequence
          Length = 154279

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   ttgtgttgctcatgctggtt 357
             ||||||||||||||||||||
Sbjct: 17560 ttgtgttgctcatgctggtt 17541
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>emb|BX908754.8| Zebrafish DNA sequence from clone DKEY-196D8 in linkage group 18,
             complete sequence
          Length = 94961

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   ttgtgttgctcatgctggtt 357
             ||||||||||||||||||||
Sbjct: 14634 ttgtgttgctcatgctggtt 14615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,046,005
Number of Sequences: 3902068
Number of extensions: 3046005
Number of successful extensions: 62886
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62782
Number of HSP's gapped (non-prelim): 104
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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