| Clone Name | rbasd26m21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence Length = 250531 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 tggaataaaacaagaacatca 46 ||||||||||||||||||||| Sbjct: 44658 tggaataaaacaagaacatca 44638
>gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003G23, complete sequence Length = 135931 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 aacaagaacatcacatatc 52 ||||||||||||||||||| Sbjct: 107296 aacaagaacatcacatatc 107278
>gb|AE006279.1| Lactococcus lactis subsp. lactis IL1403 section 41 of 218 of the complete genome Length = 10173 Score = 38.2 bits (19), Expect = 9.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 101 ccacnaaaattaaagcatctga 122 |||| ||||||||||||||||| Sbjct: 6156 ccactaaaattaaagcatctga 6135
>gb|AC137558.3| Mus musculus BAC clone RP23-16I17 from chromosome 6, complete sequence Length = 225612 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 cactgttgacaactggaat 31 ||||||||||||||||||| Sbjct: 79982 cactgttgacaactggaat 79964
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 aacaagaacatcacatatc 52 ||||||||||||||||||| Sbjct: 26726916 aacaagaacatcacatatc 26726934
>gb|AC005077.5| Homo sapiens BAC clone CTA-228D17 from 7, complete sequence Length = 240379 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 168 agaagagaaaaagggttgg 186 ||||||||||||||||||| Sbjct: 84425 agaagagaaaaagggttgg 84443
>emb|CR962126.1| Medicago truncatula chromosome 5 clone mth2-143k7, COMPLETE SEQUENCE Length = 117577 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 31 taaaacaagaacatcacatatcc 53 ||||||||||||||||| ||||| Sbjct: 99318 taaaacaagaacatcacttatcc 99340
>emb|Z74036.2|CEF55C10 Caenorhabditis elegans Cosmid F55C10, complete sequence Length = 22151 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 gacaactggaataaaacaa 38 ||||||||||||||||||| Sbjct: 622 gacaactggaataaaacaa 640
>gb|AC133863.34| Medicago truncatula clone mth2-16f20, complete sequence Length = 139062 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 aaacaagaacatcacatat 51 ||||||||||||||||||| Sbjct: 90994 aaacaagaacatcacatat 90976
>gb|AC146819.19| Medicago truncatula clone mth2-176k6, complete sequence Length = 127131 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 aaacaagaacatcacatat 51 ||||||||||||||||||| Sbjct: 31692 aaacaagaacatcacatat 31674
>gb|AC147008.21| Medicago truncatula clone mth2-106d6, complete sequence Length = 144439 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 aaacaagaacatcacatat 51 ||||||||||||||||||| Sbjct: 44374 aaacaagaacatcacatat 44392
>gb|AC133341.11| Medicago truncatula clone mth2-28i3, complete sequence Length = 138850 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 aaacaagaacatcacatat 51 ||||||||||||||||||| Sbjct: 6473 aaacaagaacatcacatat 6491
>emb|AL592310.6| Human DNA sequence from clone RP4-566D2 on chromosome 1 Contains a novel pseudogene and the 3' end of a novel gene (MGC42493), complete sequence Length = 111140 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 172 gagaaaaagggttgggttt 190 ||||||||||||||||||| Sbjct: 54739 gagaaaaagggttgggttt 54757
>emb|AL356252.10| Human DNA sequence from clone RP11-468L10 on chromosome 13, complete sequence Length = 143690 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acatgtttgtgcctcagtt 86 ||||||||||||||||||| Sbjct: 35787 acatgtttgtgcctcagtt 35805
>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the 3' end of the gene similar to G protein coupled receptor affecting testicular descent (H. sapiens)(GREAT)and a CpG island, complete sequence Length = 170522 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 agttgacatgtttgtgcct 81 ||||||||||||||||||| Sbjct: 53634 agttgacatgtttgtgcct 53616
>emb|AL031278.1|HS154A10 Human DNA sequence from clone RP1-154A10 on chromosome 1q24 Contains EST, GSS, complete sequence Length = 34522 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 actggaataaaacaagaacatca 46 ||||||| ||||||||||||||| Sbjct: 4033 actggaacaaaacaagaacatca 4055
>emb|AL022401.2|HS93L7 Human DNA sequence from clone RP1-93L7 on chromosome Xq21 Contains a novel pseudogene similar to RIKEN cDNA 6330577E15Rik, a pseudogene similar to ring finger protein 34 (RNF34) and the 3' end of the CHM gene for choroideremia (Rab escort protein 1), complete sequence Length = 206784 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 aactggaataaaacaagaa 41 ||||||||||||||||||| Sbjct: 43894 aactggaataaaacaagaa 43876
>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16, complete sequence Length = 155702 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 ataaaacaagaacatcacatatc 52 |||||||||| |||||||||||| Sbjct: 88717 ataaaacaagtacatcacatatc 88695
>gb|AC154826.2| Mus musculus BAC clone RP23-72D18 from chromosome 9, complete sequence Length = 150028 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 tgacaactggaataaaaca 37 ||||||||||||||||||| Sbjct: 123061 tgacaactggaataaaaca 123079
>emb|CR859329.1| Pongo pygmaeus mRNA; cDNA DKFZp459E1028 (from clone DKFZp459E1028) Length = 2465 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 167 aagaagagaaaaagggttg 185 ||||||||||||||||||| Sbjct: 690 aagaagagaaaaagggttg 708
>gb|AC182768.3| Pan troglodytes BAC clone CH251-178I17 from chromosome 7, complete sequence Length = 186886 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 168 agaagagaaaaagggttgg 186 ||||||||||||||||||| Sbjct: 70134 agaagagaaaaagggttgg 70116
>gb|DQ374087.1| Beta vulgaris chromosome 9 clone BAC33 genomic sequence Length = 99090 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 139 aacaggggaatattatcat 157 ||||||||||||||||||| Sbjct: 85791 aacaggggaatattatcat 85773
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 aaacaagaacatcacatat 51 ||||||||||||||||||| Sbjct: 136349 aaacaagaacatcacatat 136367
>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence Length = 216143 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 tgttgacaactggaataaaacaa 38 |||| |||||||||||||||||| Sbjct: 47860 tgttaacaactggaataaaacaa 47838
>gb|AC092706.3| Homo sapiens chromosome 18, clone RP11-658P14, complete sequence Length = 178059 Score = 38.2 bits (19), Expect = 9.6 Identities = 24/26 (92%) Strand = Plus / Minus Query: 89 gaaaaagcacacccacnaaaattaaa 114 ||||||||||| |||| ||||||||| Sbjct: 69015 gaaaaagcacagccactaaaattaaa 68990
>gb|AC162376.2| Mus musculus BAC clone RP24-490H13 from chromosome 12, complete sequence Length = 147631 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 aataaaacaagaacatcacatat 51 ||||||||||||||||| ||||| Sbjct: 104659 aataaaacaagaacatctcatat 104637
>gb|AC154264.2| Mus musculus BAC clone RP24-316B2 from chromosome 9, complete sequence Length = 166515 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 tgacaactggaataaaaca 37 ||||||||||||||||||| Sbjct: 155187 tgacaactggaataaaaca 155169
>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence Length = 169479 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 gacatgtttgtgcctcagt 85 ||||||||||||||||||| Sbjct: 51118 gacatgtttgtgcctcagt 51136
>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete sequence Length = 140044 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 aacaagaacatcacatatc 52 ||||||||||||||||||| Sbjct: 30924 aacaagaacatcacatatc 30906
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 ataaaacaagaacatcacatatc 52 |||||||||| |||||||||||| Sbjct: 5388068 ataaaacaagtacatcacatatc 5388046
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 aacaagaacatcacatatc 52 ||||||||||||||||||| Sbjct: 26818239 aacaagaacatcacatatc 26818257
>gb|AC145375.5| Pan troglodytes BAC clone RP43-57M5 from chromosome 7, complete sequence Length = 217260 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 168 agaagagaaaaagggttgg 186 ||||||||||||||||||| Sbjct: 52717 agaagagaaaaagggttgg 52735
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete sequence Length = 95870 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 172 gagaaaaagggttgggttt 190 ||||||||||||||||||| Sbjct: 74688 gagaaaaagggttgggttt 74706
>gb|AC006994.4| Homo sapiens BAC clone RP11-396J8 from 2, complete sequence Length = 192104 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 tgttgacaactggaataaa 34 ||||||||||||||||||| Sbjct: 708 tgttgacaactggaataaa 726
>emb|BX088561.9| Zebrafish DNA sequence from clone DKEY-257G8 in linkage group 2, complete sequence Length = 190419 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 attaaagcatctgaaatga 127 ||||||||||||||||||| Sbjct: 117918 attaaagcatctgaaatga 117936
>gb|AC079042.31| Mus musculus strain C57BL/6J chromosome 3 clone rp23-313f7, complete sequence Length = 197424 Score = 38.2 bits (19), Expect = 9.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 88 ggaaaaagcacacccacnaaaa 109 ||||||||||||||||| |||| Sbjct: 76736 ggaaaaagcacacccaccaaaa 76715
>dbj|AB016879.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRB17 Length = 75744 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 143 ggggaatattatcatctcc 161 ||||||||||||||||||| Sbjct: 71245 ggggaatattatcatctcc 71263
>emb|CR759908.11| Zebrafish DNA sequence from clone DKEYP-38F5 in linkage group 20, complete sequence Length = 164351 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 169 gaagagaaaaagggttggg 187 ||||||||||||||||||| Sbjct: 59127 gaagagaaaaagggttggg 59145
>emb|BX649200.6| Zebrafish DNA sequence from clone CH211-81I17 in linkage group 22, complete sequence Length = 4078 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aaaacaagaacatcacata 50 ||||||||||||||||||| Sbjct: 428 aaaacaagaacatcacata 446
>gb|AC004386.1|AC004386 Homo Sapiens Chromosome X clone bWXD691, complete sequence Length = 172657 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 168 agaagagaaaaagggttgg 186 ||||||||||||||||||| Sbjct: 156134 agaagagaaaaagggttgg 156116
>gb|AC002418.1|AC002418 Human Chromosome X, complete sequence Length = 128915 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 168 agaagagaaaaagggttgg 186 ||||||||||||||||||| Sbjct: 14660 agaagagaaaaagggttgg 14678
>emb|CT033769.2| Medicago truncatula chromosome 5 clone mte1-54l11, COMPLETE SEQUENCE Length = 127487 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 taaaacaagaacatcacatatcc 53 ||||||||||||||||| ||||| Sbjct: 41659 taaaacaagaacatcacttatcc 41637
>emb|AL671877.15| Mouse DNA sequence from clone RP23-214E3 on chromosome 3, complete sequence Length = 146015 Score = 38.2 bits (19), Expect = 9.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 88 ggaaaaagcacacccacnaaaa 109 ||||||||||||||||| |||| Sbjct: 27792 ggaaaaagcacacccaccaaaa 27813 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,174,432 Number of Sequences: 3902068 Number of extensions: 2174432 Number of successful extensions: 167222 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166972 Number of HSP's gapped (non-prelim): 250 length of query: 194 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 172 effective length of database: 17,147,199,772 effective search space: 2949318360784 effective search space used: 2949318360784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)