ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27b11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145E07, full insert sequence Length = 2237 Score = 448 bits (226), Expect = e-122 Identities = 403/462 (87%) Strand = Plus / Minus Query: 294 gtttcatgacgagcaggatagcatgcacaccccaggcctgtatgcccaggccggtggcaa 353 ||||||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||| Sbjct: 1888 gtttcatgatgagcaggacagcatgcacactcctggcctgtatgcccaggctggtggcaa 1829 Query: 354 gcgggcgtatttctccattcccggctgctcatcatatggatgttccataactttcaatag 413 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1828 ccgggcatatttctccattcctggctgctcatcatatggatgttccataactttcaataa 1769 Query: 414 ccggcgaacttcctcgtaatcacctagatcagctgcgtcaatcgctgtctggcagagata 473 ||| |||||||| || ||||||||| | |||||||||||||| || |||||||||||||| Sbjct: 1768 ccgacgaacttcatcataatcaccttgctcagctgcgtcaattgcagtctggcagagata 1709 Query: 474 gttccgaagaacatactttgggttgacacggttcattgccgctttcctttcttcatcaga 533 ||||||||||||||||||||| || ||| |||||| || |||||||||||||| |||| Sbjct: 1708 gttccgaagaacatactttggattaacagagttcatggcagctttcctttcttcgtcagg 1649 Query: 534 gacaccgctagccaccagttcctcaatatatgtttgaccccaactaatccatgcttcttt 593 || || || | |||| || ||||| || ||||| ||||||||||||||||||| || Sbjct: 1648 aacgccacttgaaaccaactcttcaatgtaagtttgtacccaactaatccatgcttcctt 1589 Query: 594 tctttctttcccaatatccaggagtgcagcttttattggaacaagtagctcagtttctgg 653 ||||||| |||||||| |||||||||||||| | ||||||||||||||| | ||||| Sbjct: 1588 tctttctggtccaatatctaggagtgcagctttaagtggaacaagtagctccttctctgg 1529 Query: 654 gatgtcacggtctgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgacttt 713 |||| | |||||||||||||||| ||||||||||||||||||||||| || ||||| || Sbjct: 1528 aatgttatggtctgctttgacatttgaaagaagacggaaaaaatttgtataatcgacctt 1469 Query: 714 atcaacagccaagttgttcagcagcttgctaataagctgctt 755 ||||||||||| |||||| |||||||||| || |||||||| Sbjct: 1468 atcaacagccaggttgttaagcagcttgcctattagctgctt 1427
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 291 bits (147), Expect = 2e-75 Identities = 216/239 (90%) Strand = Plus / Plus Query: 294 gtttcatgacgagcaggatagcatgcacaccccaggcctgtatgcccaggccggtggcaa 353 ||||||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||| Sbjct: 12299932 gtttcatgatgagcaggacagcatgcacactcctggcctgtatgcccaggctggtggcaa 12299991 Query: 354 gcgggcgtatttctccattcccggctgctcatcatatggatgttccataactttcaatag 413 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 12299992 ccgggcatatttctccattcctggctgctcatcatatggatgttccataactttcaataa 12300051 Query: 414 ccggcgaacttcctcgtaatcacctagatcagctgcgtcaatcgctgtctggcagagata 473 ||| |||||||| || ||||||||| | |||||||||||||| || |||||||||||||| Sbjct: 12300052 ccgacgaacttcatcataatcaccttgctcagctgcgtcaattgcagtctggcagagata 12300111 Query: 474 gttccgaagaacatactttgggttgacacggttcattgccgctttcctttcttcatcag 532 ||||||||||||||||||||| || ||| |||||| || |||||||||||||| |||| Sbjct: 12300112 gttccgaagaacatactttggattaacagagttcatggcagctttcctttcttcgtcag 12300170 Score = 190 bits (96), Expect = 5e-45 Identities = 162/184 (88%) Strand = Plus / Plus Query: 572 cccaactaatccatgcttcttttctttctttcccaatatccaggagtgcagcttttattg 631 ||||||||||||||||||| ||||||||| |||||||| |||||||||||||| | || Sbjct: 12300733 cccaactaatccatgcttcctttctttctggtccaatatctaggagtgcagctttaagtg 12300792 Query: 632 gaacaagtagctcagtttctgggatgtcacggtctgctttgacattcgaaagaagacgga 691 ||||||||||||| | ||||| |||| | |||||||||||||||| ||||||||||||| Sbjct: 12300793 gaacaagtagctccttctctggaatgttatggtctgctttgacatttgaaagaagacgga 12300852 Query: 692 aaaaatttgtgtagtcgactttatcaacagccaagttgttcagcagcttgctaataagct 751 |||||||||| || ||||| ||||||||||||| |||||| |||||||||| || |||| Sbjct: 12300853 aaaaatttgtataatcgaccttatcaacagccaggttgttaagcagcttgcctattagct 12300912 Query: 752 gctt 755 |||| Sbjct: 12300913 gctt 12300916
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 291 bits (147), Expect = 2e-75 Identities = 216/239 (90%) Strand = Plus / Plus Query: 294 gtttcatgacgagcaggatagcatgcacaccccaggcctgtatgcccaggccggtggcaa 353 ||||||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||| Sbjct: 16392 gtttcatgatgagcaggacagcatgcacactcctggcctgtatgcccaggctggtggcaa 16451 Query: 354 gcgggcgtatttctccattcccggctgctcatcatatggatgttccataactttcaatag 413 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 16452 ccgggcatatttctccattcctggctgctcatcatatggatgttccataactttcaataa 16511 Query: 414 ccggcgaacttcctcgtaatcacctagatcagctgcgtcaatcgctgtctggcagagata 473 ||| |||||||| || ||||||||| | |||||||||||||| || |||||||||||||| Sbjct: 16512 ccgacgaacttcatcataatcaccttgctcagctgcgtcaattgcagtctggcagagata 16571 Query: 474 gttccgaagaacatactttgggttgacacggttcattgccgctttcctttcttcatcag 532 ||||||||||||||||||||| || ||| |||||| || |||||||||||||| |||| Sbjct: 16572 gttccgaagaacatactttggattaacagagttcatggcagctttcctttcttcgtcag 16630 Score = 190 bits (96), Expect = 5e-45 Identities = 162/184 (88%) Strand = Plus / Plus Query: 572 cccaactaatccatgcttcttttctttctttcccaatatccaggagtgcagcttttattg 631 ||||||||||||||||||| ||||||||| |||||||| |||||||||||||| | || Sbjct: 17193 cccaactaatccatgcttcctttctttctggtccaatatctaggagtgcagctttaagtg 17252 Query: 632 gaacaagtagctcagtttctgggatgtcacggtctgctttgacattcgaaagaagacgga 691 ||||||||||||| | ||||| |||| | |||||||||||||||| ||||||||||||| Sbjct: 17253 gaacaagtagctccttctctggaatgttatggtctgctttgacatttgaaagaagacgga 17312 Query: 692 aaaaatttgtgtagtcgactttatcaacagccaagttgttcagcagcttgctaataagct 751 |||||||||| || ||||| ||||||||||||| |||||| |||||||||| || |||| Sbjct: 17313 aaaaatttgtataatcgaccttatcaacagccaggttgttaagcagcttgcctattagct 17372 Query: 752 gctt 755 |||| Sbjct: 17373 gctt 17376
>gb|AY107212.1| Zea mays PCO081119 mRNA sequence Length = 1323 Score = 254 bits (128), Expect = 4e-64 Identities = 371/452 (82%) Strand = Plus / Minus Query: 304 gagcaggatagcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtat 363 |||||||| ||||||||||| ||||| ||||||||||| || |||||||| || || ||| Sbjct: 1099 gagcaggacagcatgcacactccaggtctgtatgcccaagctggtggcaaccgtgcatat 1040 Query: 364 ttctccattcccggctgctcatcatatggatgttccataactttcaatagccggcgaact 423 |||||||||||||||||||| ||||| |||| | ||| || | | | ||||||||| Sbjct: 1039 ttctccattcccggctgctcgtcatacggattatgcattaccctaagcacccggcgaacc 980 Query: 424 tcctcgtaatcacctagatcagctgcgtcaatcgctgtctggcagagatagttccgaaga 483 ||||||||||| ||| | |||||| |||| || || | ||||||||||||||| || ||| Sbjct: 979 tcctcgtaatcgccttgctcagctacgtcgatagcagactggcagagatagttgcggaga 920 Query: 484 acatactttgggttgacacggttcattgccgctttcctttcttcatcagagacaccgcta 543 | ||||||||| || ||| |||||| || ||||||||||||||||||| || ||||| Sbjct: 919 atatactttggattaacagagttcatcgcggctttcctttcttcatcaggaacgccgctc 860 Query: 544 gccaccagttcctcaatatatgtttgaccccaactaatccatgcttcttttctttctttc 603 ||||||| || |||||||| || || ||||||||||||||||||| || ||||||||| Sbjct: 859 tccaccagctcttcaatataagtctgtacccaactaatccatgcttccttcctttctttc 800 Query: 604 ccaatatccaggagtgcagcttttattggaacaagtagctcagtttctgggatgtcacgg 663 |||||||| ||||| ||||| || | ||| ||||| |||||| | || || || || | Sbjct: 799 ccaatatctaggagagcagccttcagtgggacaagcagctcattctccggaataccagga 740 Query: 664 tctgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagcc 723 || || ||||||||||||||||||||||| || || || ||||| || || ||||| ||| Sbjct: 739 tccgcattgacattcgaaagaagacggaagaagttggtatagtcaaccttgtcaactgcc 680 Query: 724 aagttgttcagcagcttgctaataagctgctt 755 | |||| | |||||||| ||||| |||||||| Sbjct: 679 atgttgctaagcagcttactaattagctgctt 648
>ref|NM_001036796.1| Arabidopsis thaliana 5-formyltetrahydrofolate cyclo-ligase AT5G13050 transcript variant AT5G13050.2 mRNA, complete cds Length = 1547 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1307 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1366 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1367 cccggctgttcctcata 1383
>ref|NM_121306.2| Arabidopsis thaliana unknown protein AT5G13030 mRNA, complete cds Length = 2359 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1886 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1827 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1826 cccggctgttcctcata 1810 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 1533 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 1474 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 1473 attgttcaaaagtttgctaat 1453
>gb|BT000882.1| Arabidopsis thaliana clone C105358 unknown protein (At5g13030) mRNA, complete cds Length = 1933 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1886 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1827 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1826 cccggctgttcctcata 1810 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 1533 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 1474 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 1473 attgttcaaaagtttgctaat 1453
>gb|AF360158.1| Arabidopsis thaliana unknown protein (At5g13030) mRNA, complete cds Length = 2074 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1881 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1822 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1821 cccggctgttcctcata 1805 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 1528 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 1469 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 1468 attgttcaaaagtttgctaat 1448
>emb|AL391711.1|ATT19L5 Arabidopsis thaliana DNA chromosome 5, BAC clone T19L5 (ESSA project) Length = 82207 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 9771 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 9712 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 9711 cccggctgttcctcata 9695 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 9264 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 9205 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 9204 attgttcaaaagtttgctaat 9184
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 88262 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 88203 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 88202 cccggctgttcctcata 88186 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 87755 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 87696 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 87695 attgttcaaaagtttgctaat 87675
>dbj|AK176734.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL25-27-N17 Length = 2066 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1884 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1825 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1824 cccggctgttcctcata 1808 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 1531 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 1472 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 1471 attgttcaaaagtttgctaat 1451
>dbj|AK176541.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL25-06-C11 Length = 2064 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1884 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1825 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1824 cccggctgttcctcata 1808 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 1531 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 1472 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 1471 attgttcaaaagtttgctaat 1451
>dbj|AK176478.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL24-27-O06 Length = 2066 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 313 agcatgcacaccccaggcctgtatgcccaggccggtggcaagcgggcgtatttctccatt 372 |||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| Sbjct: 1878 agcatgcagacgcctggcctgtaagcccaggcaggaggcaaccgagcatatttctccatc 1819 Query: 373 cccggctgctcatcata 389 |||||||| || ||||| Sbjct: 1818 cccggctgttcctcata 1802 Score = 42.1 bits (21), Expect = 2.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 666 tgctttgacattcgaaagaagacggaaaaaatttgtgtagtcgactttatcaacagccaa 725 |||||| ||||| | |||||| ||||| || || ||||| || ||||||||||||| || Sbjct: 1525 tgcttttacatttgcaagaagccggaagaagttggtgtaatcaactttatcaacagacat 1466 Query: 726 gttgttcagcagcttgctaat 746 ||||||| || |||||||| Sbjct: 1465 attgttcaaaagtttgctaat 1445
>gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, complete sequence Length = 227330 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 587 cttcttttctttctttcccaat 608 |||||||||||||||||||||| Sbjct: 85555 cttcttttctttctttcccaat 85576
>gb|AC004099.1|AC004099 Homo sapiens chromosome 17, clone HCIT421K24, complete sequence Length = 136222 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 aagccaaggcaacaaacaacag 161 |||||||||||||||||||||| Sbjct: 60600 aagccaaggcaacaaacaacag 60579
>ref|XM_606578.2| PREDICTED: Bos taurus similar to death effector filament-forming Ced-4-like apoptosis protein isoform 1 (LOC528166), mRNA Length = 3867 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 568 tgaccccaactaatccatgcttctt 592 |||||||| |||||||||||||||| Sbjct: 1495 tgaccccatctaatccatgcttctt 1471
>gb|AC122290.4| Mus musculus BAC clone RP23-254P19 from chromosome 14, complete sequence Length = 163287 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 599 ctttcccaatatccaggagtg 619 ||||||||||||||||||||| Sbjct: 11350 ctttcccaatatccaggagtg 11370
>emb|CR388365.9| Zebrafish DNA sequence from clone DKEY-24I24 in linkage group 16, complete sequence Length = 150795 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 597 ttctttcccaatatccaggag 617 ||||||||||||||||||||| Sbjct: 48403 ttctttcccaatatccaggag 48423
>emb|BX248358.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 5/8 Length = 348408 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 653 ggatgtcacggtctgctttga 673 ||||||||||||||||||||| Sbjct: 85066 ggatgtcacggtctgctttga 85086
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 Length = 197859 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 720 agccaagttgttcagcagctt 740 ||||||||||||||||||||| Sbjct: 131833 agccaagttgttcagcagctt 131813
>emb|AL031135.1|ATF8D20 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project) Length = 94315 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 720 agccaagttgttcagcagctt 740 ||||||||||||||||||||| Sbjct: 11073 agccaagttgttcagcagctt 11053
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 aatatccacacaagagttttc 53 ||||||||||||||||||||| Sbjct: 35835 aatatccacacaagagttttc 35855
>ref|XM_679060.1| PREDICTED: Danio rerio similar to CG11281-PA (LOC556296), mRNA Length = 1863 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 ttctttcccaatatccaggag 617 ||||||||||||||||||||| Sbjct: 1452 ttctttcccaatatccaggag 1432
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 aatatccacacaagagttttc 53 ||||||||||||||||||||| Sbjct: 24840207 aatatccacacaagagttttc 24840227
>dbj|AP004529.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT01K12, TM0058a, complete sequence Length = 78249 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 atgcttcttttctttctttcc 604 ||||||||||||||||||||| Sbjct: 37319 atgcttcttttctttctttcc 37339
>gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome 14, complete sequence Length = 198038 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 599 ctttcccaatatccaggagtg 619 ||||||||||||||||||||| Sbjct: 173084 ctttcccaatatccaggagtg 173104 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,431,784 Number of Sequences: 3902068 Number of extensions: 8431784 Number of successful extensions: 189193 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189036 Number of HSP's gapped (non-prelim): 157 length of query: 755 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 732 effective length of database: 17,143,297,704 effective search space: 12548893919328 effective search space used: 12548893919328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
