ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSZ_MYCPU (Q50318) Cell division protein ftsZ 31 2.8
2LEUD_BACAN (Q81T65) 3-isopropylmalate dehydratase small subunit ... 30 6.1
3DNAK_THEFY (Q47TI0) Chaperone protein dnaK (Heat shock protein 7... 29 8.0

>FTSZ_MYCPU (Q50318) Cell division protein ftsZ|
          Length = 390

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 296 MATIARRLRACWIQIMSVPIRFSGWLSRLQKSKGLRLTRAIS 171
           +A IAR L A  I I++ P  F G L      +G++  RA+S
Sbjct: 115 IAKIARELGALTISIVTTPFEFEGNLRNKNAQEGIKNLRAVS 156



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>LEUD_BACAN (Q81T65) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 193

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/42 (45%), Positives = 20/42 (47%)
 Frame = +3

Query: 438 WRLFRERHELAQHPALPVEYGGAPGLPTGRPCGLAGSSRAHA 563
           WR   ERHE    P    +  GA  L TG   G  GSSR HA
Sbjct: 46  WRYDNERHENPNFPLNAPDRKGASILITGNNFG-CGSSREHA 86



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>DNAK_THEFY (Q47TI0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 613

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = -1

Query: 294 GDNCTEIACLLDPDHVGADQ-----VQWLVEQIAEEQGLEVDKGYFTDLSKDMM 148
           GD   E+      +H+G D      V WLVE+     G+        DLSKD M
Sbjct: 183 GDGVVEVKATHGDNHLGGDDWDQAVVDWLVERFKSSNGI--------DLSKDKM 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,698,654
Number of Sequences: 219361
Number of extensions: 1948148
Number of successful extensions: 6669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6658
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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