ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26g11 |
|---|---|
| Clone Library Name | barley_pub |
>TPPC4_MOUSE (Q9ES56) Trafficking protein particle complex subunit 4 (Synbindin)| (TRS23 homolog) Length = 219 Score = 122 bits (307), Expect = 6e-28 Identities = 55/106 (51%), Positives = 77/106 (72%) Frame = -3 Query: 571 RMDTNDSLRLASLWHSMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCET 392 R+ +N+ L LAS++HS+ AI QLSP G +GI++L+ F LHCFQ+LTG KF V+ + Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161 Query: 391 GAQNMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 254 ++ LL+ IYE+Y++F LKNPFY +EMPIRCELFD NL ++ Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>TPPC4_HUMAN (Q9Y296) Trafficking protein particle complex subunit 4 (Synbindin)| (TRS23 homolog) (Hematopoietic stem/progenitor cell protein 172) Length = 219 Score = 121 bits (304), Expect = 1e-27 Identities = 54/106 (50%), Positives = 77/106 (72%) Frame = -3 Query: 571 RMDTNDSLRLASLWHSMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCET 392 R+ +N+ L LAS++HS+ AI QLSP G +GI++L+ F LHC+Q+LTG KF V+ + Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161 Query: 391 GAQNMEILLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 254 ++ LL+ IYE+Y++F LKNPFY +EMPIRCELFD NL ++ Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>TRS23_YEAST (Q03784) Transport protein particle 23 kDa subunit (TRAPP 23 kDa| subunit) Length = 219 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 24/100 (24%) Frame = -3 Query: 481 TGIDLLQAHNFDLHCFQSLTGTKFFVVCET-------------------GAQNMEI---- 371 +G+ L F + +Q+LTG KF + + N+ I Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176 Query: 370 -LLKTIYELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 254 L+ +Y LY+++V+K+P Y MEMPIR LFD + ++++ Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
>TPPC1_MOUSE (Q5NCF2) Trafficking protein particle complex subunit 1| Length = 145 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Frame = -3 Query: 526 SMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE- 350 S+ + ++SP G Q + LH +++ TG K + + G + +L IY Sbjct: 44 SIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSA 103 Query: 349 LYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 254 LY EFV+KNP + ++ ELF L ++ Sbjct: 104 LYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>TPPC1_HUMAN (Q9Y5R8) Trafficking protein particle complex subunit 1 (BET5| homolog) (Multiple myeloma protein 2) (MUM-2) Length = 145 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Frame = -3 Query: 526 SMHAISQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE- 350 S+ + ++SP G Q + LH +++ TG K + + G + +L IY Sbjct: 44 SIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSA 103 Query: 349 LYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQ 254 LY E V+KNP + ++ ELF L ++ Sbjct: 104 LYVELVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>AMPO_MOUSE (Q8BXQ6) Aminopeptidase O (EC 3.4.11.-) (AP-O)| Length = 817 Score = 36.6 bits (83), Expect = 0.057 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Frame = +2 Query: 284 ELTPDRHFHLVEWVLQNK-LSVQLIYCFQQDFHI 382 EL+PD+ L+EW+L+ K LS Q ++C QQ +H+ Sbjct: 703 ELSPDQIVLLLEWLLEQKTLSPQTLHCLQQTYHL 736
>BET5_SCHPO (Q9UT70) Transport protein particle subunit bet5| Length = 155 Score = 36.2 bits (82), Expect = 0.074 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Frame = -3 Query: 451 FDLHCFQSLTGTKFFVVCETGAQNMEILLKTIYE-LYTEFVLKNPFYEMEMP------IR 293 + LH +++ T + + ++ +L+ IY LY EFV+K+P Y P I Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137 Query: 292 CELFDLNLAQVIQ 254 CE+F + L + ++ Sbjct: 138 CEIFRITLDRFVR 150
>TRS20_YEAST (P38334) Transport protein particle 20 kDa subunit (TRAPP 20 kDa| subunit) Length = 175 Score = 34.3 bits (77), Expect = 0.28 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%) Frame = -3 Query: 511 SQQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCETGAQ--------NMEILLKTI 356 S+ ++ T C + + + + S +G KF ++ A NM + + Sbjct: 78 SRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVVIDDNNMRSFYQEV 137 Query: 355 YELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQK 251 +ELY + L NPFY++ PIR FD + + +K Sbjct: 138 HELYVK-TLMNPFYKITDPIRSPAFDSRVRTLARK 171
>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)| Length = 140 Score = 32.7 bits (73), Expect = 0.82 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 358 IYELYTEFVLKNPFYEMEMPIRCELFD 278 +Y+LY +F + NPFYE PIR FD Sbjct: 102 VYDLYIKFAM-NPFYEPNSPIRSSAFD 127
>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)| (MBP-1-interacting protein 2A) (MIP-2A) Length = 140 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 358 IYELYTEFVLKNPFYEMEMPIRCELFD 278 +Y+LY +F + NPFYE PIR FD Sbjct: 102 VYDLYIKFSM-NPFYEPNSPIRSSAFD 127
>YM17_PARTE (P15618) Hypothetical 26.3 kDa protein (ORF17)| Length = 221 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 12/52 (23%) Frame = -3 Query: 196 SLAISCVFFYHLCIWSPR------------TCFILKVILAHNMNAVQTFISV 77 SL +SC+FF L WSP TC +L+ LA++++A +I V Sbjct: 34 SLCLSCLFFI-LLFWSPSTSYLILVFFLLYTCVVLQTQLAYSLSAFMNYIGV 84
>CND1_MOUSE (Q8K2Z4) Condensin complex subunit 1 (Chromosome| condensation-related SMC-associated protein 1) (Chromosome-associated protein D2) (mCAP-D2) (XCAP-D2 homolog) Length = 1392 Score = 31.6 bits (70), Expect = 1.8 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 19/95 (20%) Frame = -3 Query: 475 IDLLQAHNFDLHCF---------------QSLTGTKFFVVCETG----AQNMEILLKTIY 353 +D+LQAH D++ F ++L T+F V A ++ K Sbjct: 366 LDILQAHGHDVNSFVRSRVLQLFARIVQQKALPLTRFQAVVALAVGRLADKSVLVCKNAI 425 Query: 352 ELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQKD 248 +L F+ NPF C+L D++LA +QK+ Sbjct: 426 QLLASFLANNPF-------SCKLSDIDLAGPLQKE 453
>DNAA_ANASP (Q8YVG9) Chromosomal replication initiator protein dnaA| Length = 459 Score = 31.2 bits (69), Expect = 2.4 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%) Frame = +2 Query: 92 LYRIHVMSQ-NHFQDETCPR*PNTKM----VEKYTRD---CKRRCSVCSFHASPAQKCDT 247 L + H+M H++ E CP N+K+ E++T D R S+ SF + D Sbjct: 163 LGKTHLMQAIGHYRWEICP---NSKIFYVSTEQFTNDLITAIRNDSMQSFREH-YRAADV 218 Query: 248 VLLDDLG*VEVKELTPDRHFH 310 +L+DD+ +E KE T + FH Sbjct: 219 LLVDDIQFIEGKEYTQEEFFH 239
>AMPO_RAT (P69527) Aminopeptidase O (EC 3.4.11.-) (AP-O)| Length = 816 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Frame = +2 Query: 281 KELTPDRHFHLVEWVLQNK-LSVQLIYCFQQDFHI 382 ++L+PD+ L+EW+L+ K LS Q ++ QQ +H+ Sbjct: 701 EKLSPDQIVLLLEWLLEQKTLSPQTLHRLQQTYHL 735
>R157_BOVIN (Q28183) Retina-specific 15.7 kDa protein| Length = 147 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/70 (28%), Positives = 36/70 (51%) Frame = -1 Query: 600 YTTRTMARQGEWTPTTVYASRVSGTLCTQSPSSCPLPLAVLALTSYKPTILTSIASNPSQ 421 + T + + QG+W P T + + + ++ P SCP P A T+ PT+ T P++ Sbjct: 42 FHTDSPSIQGQWHPFTNKPTALGCS--SRGPESCPDPAASTMKTNSIPTVWT---FTPAE 96 Query: 420 GRNFSLYAKQ 391 G + S +A + Sbjct: 97 GGSCSWFASR 106
>KLF12_HUMAN (Q9Y4X4) Krueppel-like factor 12 (Transcriptional repressor| AP-2rep) Length = 402 Score = 30.8 bits (68), Expect = 3.1 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -1 Query: 564 TPTTVYASRVSGTLCTQSPSSCPLPLAVLALTSYKPTILTSIASNPS 424 +PT V +S VS T SPSS + + + PT++TS++S S Sbjct: 92 SPTAVSSSPVSMTASASSPSSTSTSSSSSSRLASSPTVITSVSSASS 138
>DXR_METCA (Q60BA4) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +2 Query: 275 EVKELTPDRHFHLVEWVLQNKLSVQLIYCFQQDFHILSACFAYNEK 412 E++ +TP++ WV+ K+SV + ++ AC +N K Sbjct: 193 ELETVTPEQAVAHPNWVMGRKISVDSATMMNKGLEVIEACLLFNAK 238
>HISZ_PROMM (Q7TV03) ATP phosphoribosyltransferase regulatory subunit| Length = 392 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Frame = -3 Query: 547 RLASLWHSMHAIS------QQLSPTTGCTGIDLLQAHNFDLHCFQSLTGTKFFVVCETGA 386 RL+ L+ + A++ +Q+SP GIDL F H F+ TG F +VC++ A Sbjct: 223 RLSGLFGTQQALNNLQRLFEQMSPLAADQGIDLQLDPTFQPH-FELYTGLVFQLVCQSDA 281
>HIP1R_MOUSE (Q9JKY5) Huntingtin-interacting protein 1-related protein| (Hip1-related) Length = 1068 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +3 Query: 180 HEIARDGAPYVPFMLHRPRSATRSFWMTWARLRSKSSHRIGI 305 H++ RDG P V R RS R W LR + H + I Sbjct: 91 HKVLRDGHPNVLHDYQRYRSNIREIGDLWGHLRDQYGHLVNI 132
>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] (Fragment) Length = 591 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = -2 Query: 275 QPSPGHPEGPCRTSGPVKHERNIRSTVSC---NLVC 177 QPSP P GP GP++ E + VSC N+ C Sbjct: 356 QPSPPGPPGPPSPPGPLRSEISCDEVVSCRPGNICC 391
>CND1_HUMAN (Q15021) Condensin complex subunit 1 (Chromosome| condensation-related SMC-associated protein 1) (Chromosome-associated protein D2) (hCAP-D2) (XCAP-D2 homolog) Length = 1401 Score = 29.3 bits (64), Expect = 9.1 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 19/95 (20%) Frame = -3 Query: 475 IDLLQAHNFDLHCF---------------QSLTGTKFFVVCETG----AQNMEILLKTIY 353 +D LQAH D++ F ++L T+F V A ++ K Sbjct: 366 LDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLVCKNAI 425 Query: 352 ELYTEFVLKNPFYEMEMPIRCELFDLNLAQVIQKD 248 +L F+ NPF C+L D +LA +QK+ Sbjct: 426 QLLASFLANNPF-------SCKLSDADLAGPLQKE 453
>DNAA_STAES (Q8CQK7) Chromosomal replication initiator protein dnaA| Length = 451 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 152 PNTKMV----EKYTRDCKR--RCSVCSFHASPAQKCDTVLLDDLG*VEVKELTPDRHFHL 313 PN K++ EK+T + + R + +K D +L+DD+ ++ KE T + FH Sbjct: 176 PNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHT 235 Query: 314 VEWVLQNKLSV 346 + QN + Sbjct: 236 FNELHQNNKQI 246
>DNAA_STAEQ (Q5HJZ9) Chromosomal replication initiator protein dnaA| Length = 451 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = +2 Query: 152 PNTKMV----EKYTRDCKR--RCSVCSFHASPAQKCDTVLLDDLG*VEVKELTPDRHFHL 313 PN K++ EK+T + + R + +K D +L+DD+ ++ KE T + FH Sbjct: 176 PNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHT 235 Query: 314 VEWVLQNKLSV 346 + QN + Sbjct: 236 FNELHQNNKQI 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,347,727 Number of Sequences: 219361 Number of extensions: 2074809 Number of successful extensions: 5438 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5432 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
