ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26e20 |
|---|---|
| Clone Library Name | barley_pub |
>VPS52_RAT (O55166) Vacuolar protein sorting protein 52 (SAC2 suppressor of| actin mutations 2-like protein) Length = 723 Score = 53.1 bits (126), Expect = 7e-07 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 3/154 (1%) Frame = -1 Query: 669 LTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVKTRTXXXXXXXXX 490 + + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 570 MMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAE 629 Query: 489 XXSIGD--VEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEIXXXXXXXXXXXXXXXT 316 + V L++ F S WKA++E + +DV+ SF+NF G I Sbjct: 630 RLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFH 689 Query: 315 ECVKRVN-GGSALNKDLVSISSILYEIKKYSRTF 217 + + +L++I ++ E+KK+ F Sbjct: 690 RVLSQPQLRALPARAELINIHHLMVELKKHKPNF 723
>VPS52_MOUSE (Q8C754) Vacuolar protein sorting protein 52| Length = 723 Score = 53.1 bits (126), Expect = 7e-07 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 3/154 (1%) Frame = -1 Query: 669 LTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVKTRTXXXXXXXXX 490 + + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 570 MMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAE 629 Query: 489 XXSIGD--VEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEIXXXXXXXXXXXXXXXT 316 + V L++ F S WKA++E + +DV+ SF+NF G I Sbjct: 630 RLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFH 689 Query: 315 ECVKRVN-GGSALNKDLVSISSILYEIKKYSRTF 217 + + +L++I ++ E+KK+ F Sbjct: 690 RVLSQPQLRALPARAELINIHHLMVELKKHKPNF 723
>VPS52_HUMAN (Q8N1B4) Vacuolar protein sorting protein 52 (SAC2 suppressor of| actin mutations 2-like protein) Length = 723 Score = 52.0 bits (123), Expect = 2e-06 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 3/154 (1%) Frame = -1 Query: 669 LTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVKTRTXXXXXXXXX 490 + + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 570 MMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAE 629 Query: 489 XXSIGD--VEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEIXXXXXXXXXXXXXXXT 316 + V L++ F S WK+++E + +DV+ SF+NF G I Sbjct: 630 RLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFH 689 Query: 315 ECVKRVN-GGSALNKDLVSISSILYEIKKYSRTF 217 + + +L++I ++ E+KK+ F Sbjct: 690 RVLSQPQLRALPARAELINIHHLMVELKKHKPNF 723
>VPS52_CANFA (Q5TJF0) Vacuolar protein sorting protein 52| Length = 723 Score = 52.0 bits (123), Expect = 2e-06 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 3/154 (1%) Frame = -1 Query: 669 LTIAVLKEAGTEGGKTQLHFEEVLKSNIAIYVEEVLMEHFSDLIKFVKTRTXXXXXXXXX 490 + + VL E + K F+++L + ++EE+L F L+ FVK Sbjct: 570 MMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQAE 629 Query: 489 XXSIGD--VEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEIXXXXXXXXXXXXXXXT 316 + V L++ F S WK+++E + +DV+ SF+NF G I Sbjct: 630 RLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFH 689 Query: 315 ECVKRVN-GGSALNKDLVSISSILYEIKKYSRTF 217 + + +L++I ++ E+KK+ F Sbjct: 690 RVLSQPQLRALPARAELINIHHLMVELKKHKPNF 723
>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 33.5 bits (75), Expect = 0.59 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Frame = +2 Query: 359 FRISIPHRKLLKDV-------MTSLCISSIAAFHRLAKSFTSGSTSPMLALSELEAESSD 517 FR +P +LL+ V + A H L + FT + ++ +E Sbjct: 491 FRSQLPKEQLLQAVPLLISHLQAESTVEHTYAAHALERLFTMRGPNNTTLITPVEMAPFT 550 Query: 518 VRVLTNLIKSLKCSISTSSTYIAMLLLRTSSK*SCVFPPSVP 643 ++L NL KSL S + YI ++RT S P +P Sbjct: 551 EQLLNNLFKSLALPGSAENEYIMKAIMRTFSLLQEAIVPYIP 592
>IDI_AGRME (Q8KP37) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 206 Score = 30.8 bits (68), Expect = 3.8 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -2 Query: 215 SSHCFIPGPAMPCTHTVMETLIHAMLLEERTSRRVSPLCKYRAMCSSAVI 66 +S C P PA P H V + LE R V P +YRA +S ++ Sbjct: 83 NSFCGHPAPAEPLPHAVRRRAEFELGLELRDVEPVLPFFRYRATDASGIV 132
>DSBD_NEIMB (Q9JYM0) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 601 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 244 IQDGGYGYQVLVEGRAAVDPLDALGQPRVVQEQLRESRF 360 I DG Y YQ + G+ DP D LGQP + + +E F Sbjct: 50 IADGYYMYQAKIVGKT--DPADLLGQPSFSKGEEKEDEF 86
>DSBD_NEIMA (Q9JTL9) Thiol:disulfide interchange protein dsbD precursor (EC| 1.8.1.8) (Protein-disulfide reductase) (Disulfide reductase) Length = 601 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 244 IQDGGYGYQVLVEGRAAVDPLDALGQPRVVQEQLRESRF 360 I DG Y YQ + G+ DP D LGQP + + +E F Sbjct: 50 IADGYYMYQAKIVGKT--DPADLLGQPSFSKGEEKEDEF 86
>PTC2_HUMAN (Q9Y6C5) Protein patched homolog 2 (PTC2)| Length = 1203 Score = 29.6 bits (65), Expect = 8.6 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 14/78 (17%) Frame = -2 Query: 245 MRSRNTLGLFSSHCFIPGPAMP-----------CTHTVMETLIHAML---LEERTSRRVS 108 + S N + F +P PA+ CT + + A+L L R +R+ Sbjct: 504 LTSINNMAAFLMAALVPIPALRAFSLQAAIVVGCTFVAVMLVFPAILSLDLRRRHCQRLD 563 Query: 107 PLCKYRAMCSSAVIGVLP 54 LC + + CS+ VI +LP Sbjct: 564 VLCCFSSPCSAQVIQILP 581
>FACD2_RAT (Q6IV68) Fanconi anemia group D2 protein homolog (Protein FACD2)| (FanCD2) Length = 1451 Score = 29.6 bits (65), Expect = 8.6 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Frame = -2 Query: 248 CMRSRNTLGLFSSHCFIPGPAMPCTHTVMETLIHAMLLEERTSRRVSPLCKYR-----AM 84 C++ + FS+HC + P + +TL H+ ++R S LCKY Sbjct: 411 CIQEQLLDSTFSTHCLVLKDICPSILLLAQTLFHSQ--DQRIILFGSLLCKYAFKFFDTY 468 Query: 83 CSSAVIGVL 57 C V+G L Sbjct: 469 CQQEVVGAL 477
>HDD1A_HUMAN (Q08623) Haloacid dehalogenase-like hydrolase domain-containing| protein 1A (GS1 protein) Length = 214 Score = 29.6 bits (65), Expect = 8.6 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%) Frame = +1 Query: 250 DGGYGYQV--LVEGRAAVDP----LDALGQPRVVQEQLRES--RFQDLHPTQEVAEGCDD 405 D Y + V LV G+ A++ +D L P +E + ES + +++ PT + G + Sbjct: 24 DKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEK 83 Query: 406 VLVHQLDRGLPSA 444 +++H G+P A Sbjct: 84 LIIHLRKHGIPFA 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,934,448 Number of Sequences: 219361 Number of extensions: 1855456 Number of successful extensions: 4774 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4768 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
