| Clone Name | rbasd25p06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC148920.1| Mus musculus BAC clone RP23-273O10 from chromosome 19, complete sequence Length = 224526 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 aagaatttgcagaggtcctag 236 ||||||||||||||||||||| Sbjct: 184899 aagaatttgcagaggtcctag 184919
>emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in linkage group 15, complete sequence Length = 212742 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 84 cttcaattgtgtatgaagctcccag 108 |||||||||||||| |||||||||| Sbjct: 176829 cttcaattgtgtataaagctcccag 176853
>gb|AC153131.5| Mus musculus BAC clone RP24-356O12 from chromosome 19, complete sequence Length = 184864 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 aagaatttgcagaggtcctag 236 ||||||||||||||||||||| Sbjct: 78398 aagaatttgcagaggtcctag 78418
>gb|AY423026.1| Danio rerio dystrobrevin, beta (DTNB) mRNA, complete cds Length = 3069 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 caggaagcttcagcgcctcc 191 |||||||||||||||||||| Sbjct: 481 caggaagcttcagcgcctcc 462
>gb|AC136710.8| Mus musculus chromosome 19, clone RP23-35B13, complete sequence Length = 206056 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 aagaggagttggatgaagaa 220 |||||||||||||||||||| Sbjct: 122953 aagaggagttggatgaagaa 122934
>ref|XM_595770.2| PREDICTED: Bos taurus similar to X Kell blood group precursor-related family, member 4 (LOC517598), partial mRNA Length = 1312 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ggcagggggcgcctcttgac 311 |||||||||||||||||||| Sbjct: 233 ggcagggggcgcctcttgac 214
>gb|AC140320.2| Mus musculus BAC clone RP23-401C13 from chromosome 19, complete sequence Length = 197365 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagaggagttggatgaagaa 220 |||||||||||||||||||| Sbjct: 133544 aagaggagttggatgaagaa 133563
>gb|AC137824.25| Medicago truncatula clone mth2-10l10, complete sequence Length = 114536 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 195 cagtggaagaggagttggatgaagaatt 222 ||||||||||||| |||||||| ||||| Sbjct: 37742 cagtggaagaggatttggatgatgaatt 37715
>emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on chromosome 9 Contains a novel gene, complete sequence Length = 125196 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccagcaggcaggaagagcac 157 |||||||||||||||||||| Sbjct: 73809 ccagcaggcaggaagagcac 73790
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ttggcggaggggacgagcat 389 |||||||||||||||||||| Sbjct: 1966214 ttggcggaggggacgagcat 1966195
>emb|AL353788.33| Human DNA sequence from clone RP11-112K13 on chromosome Xq26.1-26.3, complete sequence Length = 162739 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 atgaagaatttgcagaggtcctag 236 |||| ||||||||||||||||||| Sbjct: 109668 atgatgaatttgcagaggtcctag 109645
>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3, complete sequence Length = 122049 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ggctggcgggcagggggcgcctct 307 ||||||| |||||||||||||||| Sbjct: 25883 ggctggcaggcagggggcgcctct 25860
>emb|BX294015.1|NCB10N12 Neurospora crassa DNA linkage group V BAC contig B10N12 Length = 70199 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 aggggcatcttggcggaggggacg 384 ||||||||||||||||| |||||| Sbjct: 15462 aggggcatcttggcggacgggacg 15439
>emb|AL022600.1|SPBC13G1 S.pombe chromosome II cosmid c13G1 Length = 28000 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagaggagttggatgaagaa 220 |||||||||||||||||||| Sbjct: 14715 aagaggagttggatgaagaa 14734
>gb|AC036196.10| Homo sapiens chromosome 15, clone RP11-599A21, complete sequence Length = 180366 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gaagaggagttggatgaaga 219 |||||||||||||||||||| Sbjct: 65348 gaagaggagttggatgaaga 65329
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ggcgggcagggggcgcctct 307 |||||||||||||||||||| Sbjct: 2419948 ggcgggcagggggcgcctct 2419967
>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence Length = 194237 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gaagaggagttggatgaaga 219 |||||||||||||||||||| Sbjct: 174310 gaagaggagttggatgaaga 174291
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ttccagataccagtggcagacctt 86 |||||||||||||| ||||||||| Sbjct: 3528746 ttccagataccagtcgcagacctt 3528769
>ref|NM_199709.1| Danio rerio dystrobrevin, beta (dtnb), mRNA Length = 3069 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 caggaagcttcagcgcctcc 191 |||||||||||||||||||| Sbjct: 481 caggaagcttcagcgcctcc 462
>ref|NM_001022480.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC13G1.09), partial mRNA Length = 1350 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aagaggagttggatgaagaa 220 |||||||||||||||||||| Sbjct: 188 aagaggagttggatgaagaa 207
>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete sequence Length = 165755 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccagcaggcaggaagagcac 157 |||||||||||||||||||| Sbjct: 149607 ccagcaggcaggaagagcac 149588
>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium cancer , segment 5/10 Length = 100000 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccagcaggcaggaagagcac 157 |||||||||||||||||||| Sbjct: 97388 ccagcaggcaggaagagcac 97369 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,414,578 Number of Sequences: 3902068 Number of extensions: 3414578 Number of successful extensions: 65168 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65018 Number of HSP's gapped (non-prelim): 150 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)