ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25o22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CDH_PHACH (Q01738) Cellobiose dehydrogenase precursor (EC 1.1.99... 29 7.8

>CDH_PHACH (Q01738) Cellobiose dehydrogenase precursor (EC 1.1.99.18) (CDH)|
           (Cellobiose-quinone oxidoreductase)
          Length = 773

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +1

Query: 241 YQPQVTL*GNYWYHRPXXSSKTPEGVFSXEVYAXTTNNLXTCDQDLXPRLP 393
           Y P  T+  N+W       S     V    V    TNNL   D  + P LP
Sbjct: 698 YDP-ATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLP 747


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,745,031
Number of Sequences: 219361
Number of extensions: 860104
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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