ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26d15 |
|---|---|
| Clone Library Name | barley_pub |
>DIG1_CAEEL (Q09165) Mesocentin precursor| Length = 13100 Score = 34.7 bits (78), Expect = 0.26 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -1 Query: 282 LPLTSAGRCYYGKASARKIVYPDSSELLECDCDITDYGTRQTDGMLEPDFV 130 +P G+C KAS R+I YP S+L D TD + ++G++ P V Sbjct: 97 IPPPDEGKCIISKASGREICYPSYSQL---DTSCTDVTGQSSNGLVVPPVV 144
>RAD50_METMP (P62134) DNA double-strand break repair rad50 ATPase| Length = 993 Score = 33.1 bits (74), Expect = 0.76 Identities = 20/79 (25%), Positives = 43/79 (54%) Frame = -1 Query: 582 SKEAKETLLEKRSHYMKMKLFIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDR 403 S+ KE +L+K + K+KL ++E+ Q+ +K+A + L+ + + +I + + + Sbjct: 205 SEILKEEILKKYENLEKLKLEKNSEILQMEEKFAENNQLK-ENLKDIISEIKNINLEIQN 263 Query: 402 FSYHVNFVAASESGIADNQ 346 F +N VA I++N+ Sbjct: 264 FKNSLNLVAEESKNISENE 282
>UBIB_SHIFL (P0A6A2) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 522 FIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRFSYHVNFVA 376 F HA++ ++EHP PKY+ + CG+V + D+ NF+A Sbjct: 284 FFHADMHPGNIFVSYEHPENPKYI-GIDCGIVGSLNKEDKRYLAENFIA 331
>UBIB_ECOLI (P0A6A0) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 522 FIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRFSYHVNFVA 376 F HA++ ++EHP PKY+ + CG+V + D+ NF+A Sbjct: 284 FFHADMHPGNIFVSYEHPENPKYI-GIDCGIVGSLNKEDKRYLAENFIA 331
>UBIB_ECOL6 (Q8FBI8) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 522 FIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRFSYHVNFVA 376 F HA++ ++EHP PKY+ + CG+V + D+ NF+A Sbjct: 284 FFHADMHPGNIFVSYEHPENPKYI-GIDCGIVGSLNKEDKRYLAENFIA 331
>UBIB_ECO57 (P0A6A1) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -1 Query: 522 FIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRFSYHVNFVA 376 F HA++ ++EHP PKY+ + CG+V + D+ NF+A Sbjct: 284 FFHADMHPGNIFVSYEHPENPKYI-GIDCGIVGSLNKEDKRYLAENFIA 331
>RIM_CAEEL (Q22366) Rab-3-interacting molecule unc-10 (Rim) (Uncoordinated| protein 10) Length = 1563 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = +3 Query: 186 HNHTQEVLMNRDTQSSSRTPFHSSNDQQMSGVVCSRNLVLKDEKMA--HLYRRRRVGYQQ 359 HN TQ+ MN++ Q+S++ P + N QM ++N V + + A H RR QQ Sbjct: 191 HNQTQQNFMNQN-QNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQNNRRAMQQQ 249 Query: 360 SLIRKQ 377 + + Q Sbjct: 250 PMSQNQ 255
>GLSA1_BACAN (Q81YY0) Glutaminase 1 (EC 3.5.1.2)| Length = 309 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = -1 Query: 660 LEQIMCILKETCAPMCGPLLPYAAKLSKEAKETLLEKRS--HYMKMKLFIHAELAQVLKK 487 +E+I+ ++E P + Y++K++ ET RS +YMK I ++ +++ Sbjct: 136 MERILHFVREITD---NPTINYSSKVANSELETAYLNRSLCYYMKQNGIIDCDIEELMDL 192 Query: 486 YAFEHPLEPKYVPSVICGLVAASESLDRF 400 Y + +E + GL+ A + D + Sbjct: 193 YTRQCAVEVNCIDLARIGLIFAMDGYDPY 221
>MYG_VULCH (P02160) Myoglobin| Length = 153 Score = 29.6 bits (65), Expect = 8.3 Identities = 21/88 (23%), Positives = 40/88 (45%) Frame = -1 Query: 579 KEAKETLLEKRSHYMKMKLFIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRF 400 K+ T+L +K K AEL + + +A +H + KY+ + ++ +S Sbjct: 62 KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 121 Query: 399 SYHVNFVAASESGIADNQLFFADINAPF 316 +H + AA + + +LF DI A + Sbjct: 122 DFHADTEAAMKKAL---ELFRNDIAAKY 146
>MYG_OTOME (P63114) Myoglobin| Length = 153 Score = 29.6 bits (65), Expect = 8.3 Identities = 21/88 (23%), Positives = 40/88 (45%) Frame = -1 Query: 579 KEAKETLLEKRSHYMKMKLFIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRF 400 K+ T+L +K K AEL + + +A +H + KY+ + ++ +S Sbjct: 62 KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 121 Query: 399 SYHVNFVAASESGIADNQLFFADINAPF 316 +H + AA + + +LF DI A + Sbjct: 122 DFHADTEAAMKKAL---ELFRNDIAAKY 146
>MYG_CANFA (P63113) Myoglobin| Length = 153 Score = 29.6 bits (65), Expect = 8.3 Identities = 21/88 (23%), Positives = 40/88 (45%) Frame = -1 Query: 579 KEAKETLLEKRSHYMKMKLFIHAELAQVLKKYAFEHPLEPKYVPSVICGLVAASESLDRF 400 K+ T+L +K K AEL + + +A +H + KY+ + ++ +S Sbjct: 62 KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 121 Query: 399 SYHVNFVAASESGIADNQLFFADINAPF 316 +H + AA + + +LF DI A + Sbjct: 122 DFHADTEAAMKKAL---ELFRNDIAAKY 146
>GLSA1_BACCR (Q81IB3) Glutaminase 1 (EC 3.5.1.2)| Length = 309 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = -1 Query: 660 LEQIMCILKETCAPMCGPLLPYAAKLSKEAKETLLEKRS--HYMKMKLFIHAELAQVLKK 487 +E+I+ ++E P + Y++K++ ET RS +YMK I ++ +++ Sbjct: 136 MERILHFVREITD---NPTINYSSKVADSELETAYLNRSLCYYMKQNGIIDCDIEELMDL 192 Query: 486 YAFEHPLEPKYVPSVICGLVAASESLDRF 400 Y + +E + GL+ A + D + Sbjct: 193 YTRQCAVEVNCIDLARIGLIFAMDGYDPY 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,809,799 Number of Sequences: 219361 Number of extensions: 1871751 Number of successful extensions: 5062 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4909 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5062 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
