ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA 40 1.6
2emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA 40 1.6
3emb|CR733825.2|CNS0GT00 Tetraodon nigroviridis full-length cDNA 38 6.2
4emb|CR724191.2|CNS0GLQD Tetraodon nigroviridis full-length cDNA 38 6.2
5emb|CR680721.1|CNS0FO71 Tetraodon nigroviridis full-length cDNA 38 6.2
6emb|CR675728.2|CNS0FKD2 Tetraodon nigroviridis full-length cDNA 38 6.2
7emb|CR674200.2|CNS0FJ6M Tetraodon nigroviridis full-length cDNA 38 6.2
8emb|CR669553.2|CNS0FFLJ Tetraodon nigroviridis full-length cDNA 38 6.2
9emb|CR665928.2|CNS0FCSU Tetraodon nigroviridis full-length cDNA 38 6.2
10emb|CR663641.2|CNS0FB1B Tetraodon nigroviridis full-length cDNA 38 6.2
11emb|CR658043.2|CNS0F6PT Tetraodon nigroviridis full-length cDNA 38 6.2
12emb|CR659892.2|CNS0F856 Tetraodon nigroviridis full-length cDNA 38 6.2
13gb|AF130035.1| Heterocapsa triquetra psbC minicircle, complete s... 38 6.2
14gb|AY004271.1| Heterocapsa triquetra clone circle5 aberrant mini... 38 6.2
15gb|AY004270.1| Heterocapsa triquetra clone circle4 aberrant mini... 38 6.2
16gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complet... 38 6.2

>emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA
          Length = 724

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 23  tactcagcagcacgtcgcaa 42
           ||||||||||||||||||||
Sbjct: 562 tactcagcagcacgtcgcaa 581



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>emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA
          Length = 677

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 23  tactcagcagcacgtcgcaa 42
           ||||||||||||||||||||
Sbjct: 516 tactcagcagcacgtcgcaa 535



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>emb|CR733825.2|CNS0GT00 Tetraodon nigroviridis full-length cDNA
          Length = 1866

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   tactcagcagcacgtcgca 41
            |||||||||||||||||||
Sbjct: 1708 tactcagcagcacgtcgca 1726



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>emb|CR724191.2|CNS0GLQD Tetraodon nigroviridis full-length cDNA
          Length = 1860

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   tactcagcagcacgtcgca 41
            |||||||||||||||||||
Sbjct: 1701 tactcagcagcacgtcgca 1719



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>emb|CR680721.1|CNS0FO71 Tetraodon nigroviridis full-length cDNA
          Length = 1130

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   tactcagcagcacgtcgca 41
            |||||||||||||||||||
Sbjct: 985  tactcagcagcacgtcgca 1003



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>emb|CR675728.2|CNS0FKD2 Tetraodon nigroviridis full-length cDNA
          Length = 1124

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  tactcagcagcacgtcgca 41
           |||||||||||||||||||
Sbjct: 979 tactcagcagcacgtcgca 997



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>emb|CR674200.2|CNS0FJ6M Tetraodon nigroviridis full-length cDNA
          Length = 593

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  tactcagcagcacgtcgca 41
           |||||||||||||||||||
Sbjct: 432 tactcagcagcacgtcgca 450



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>emb|CR669553.2|CNS0FFLJ Tetraodon nigroviridis full-length cDNA
          Length = 1043

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  tactcagcagcacgtcgca 41
           |||||||||||||||||||
Sbjct: 882 tactcagcagcacgtcgca 900



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>emb|CR665928.2|CNS0FCSU Tetraodon nigroviridis full-length cDNA
          Length = 1050

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  tactcagcagcacgtcgca 41
           |||||||||||||||||||
Sbjct: 894 tactcagcagcacgtcgca 912



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>emb|CR663641.2|CNS0FB1B Tetraodon nigroviridis full-length cDNA
          Length = 1636

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   tactcagcagcacgtcgca 41
            |||||||||||||||||||
Sbjct: 1473 tactcagcagcacgtcgca 1491



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>emb|CR658043.2|CNS0F6PT Tetraodon nigroviridis full-length cDNA
          Length = 1171

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   tactcagcagcacgtcgca 41
            |||||||||||||||||||
Sbjct: 1024 tactcagcagcacgtcgca 1042



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>emb|CR659892.2|CNS0F856 Tetraodon nigroviridis full-length cDNA
          Length = 1143

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   tactcagcagcacgtcgca 41
            |||||||||||||||||||
Sbjct: 988  tactcagcagcacgtcgca 1006



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>gb|AF130035.1| Heterocapsa triquetra psbC minicircle, complete sequence; chloroplast
          Length = 2330

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   atgtactcagcagcacgtc 38
            |||||||||||||||||||
Sbjct: 1998 atgtactcagcagcacgtc 1980



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>gb|AY004271.1| Heterocapsa triquetra clone circle5 aberrant minicircle, complete
            sequence; chloroplast
          Length = 2099

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   atgtactcagcagcacgtc 38
            |||||||||||||||||||
Sbjct: 1593 atgtactcagcagcacgtc 1575



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>gb|AY004270.1| Heterocapsa triquetra clone circle4 aberrant minicircle, complete
            sequence; chloroplast
          Length = 2045

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   atgtactcagcagcacgtc 38
            |||||||||||||||||||
Sbjct: 1616 atgtactcagcagcacgtc 1598



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>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence
          Length = 203428

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     acagagaatttcctgaaga 80
              |||||||||||||||||||
Sbjct: 189816 acagagaatttcctgaaga 189798


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 785,772
Number of Sequences: 3902068
Number of extensions: 785772
Number of successful extensions: 41349
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41332
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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