ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT... 38 0.006
2ALA2_PANMI (P34106) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT... 37 0.014
3ALAT_HUMAN (P24298) Alanine aminotransferase (EC 2.6.1.2) (Gluta... 35 0.041
4ALAT_MOUSE (Q8QZR5) Alanine aminotransferase (EC 2.6.1.2) (Gluta... 32 0.60
5ALAT_RAT (P25409) Alanine aminotransferase (EC 2.6.1.2) (Glutami... 31 0.78
6ALAT_YEAST (P52892) Putative alanine aminotransferase (EC 2.6.1.... 29 3.0

>ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)|
           (Glutamic--pyruvic transaminase 2) (Glutamic--alanine
           transaminase 2) (ALAAT-2)
          Length = 482

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -2

Query: 115 NFXXGXMYSXXXIXXPQRAMDVAKSAGKEPDVYYCLKL 2
           N   G MY    I  PQ+A++ AK+A K PD +Y L+L
Sbjct: 391 NEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRL 428



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>ALA2_PANMI (P34106) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)|
           (Glutamic--pyruvic transaminase 2) (Glutamic--alanine
           transaminase 2) (ALAAT-2)
          Length = 482

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 115 NFXXGXMYSXXXIXXPQRAMDVAKSAGKEPDVYYCLKL 2
           N   G MY    I  P++A++ AK+A K PD +Y L+L
Sbjct: 391 NKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRL 428



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>ALAT_HUMAN (P24298) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic|
           transaminase) (GPT) (Glutamic--alanine transaminase)
          Length = 495

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 103 GXMYSXXXIXXPQRAMDVAKSAGKEPDVYYCLKL 2
           G MYS   +  P RA++ A+  G  PD+++CL+L
Sbjct: 409 GAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRL 442



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>ALAT_MOUSE (Q8QZR5) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic|
           transaminase) (GPT) (Glutamic--alanine transaminase)
          Length = 495

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 103 GXMYSXXXIXXPQRAMDVAKSAGKEPDVYYCLKL 2
           G MYS   I  P +A+  A+  G  PD+++CL L
Sbjct: 409 GAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCL 442



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>ALAT_RAT (P25409) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic|
           transaminase) (GPT) (Glutamic--alanine transaminase)
          Length = 495

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 103 GXMYSXXXIXXPQRAMDVAKSAGKEPDVYYCLKL 2
           G MYS   +  P +A+  A+  G  PD+++CL L
Sbjct: 409 GAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCL 442



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>ALAT_YEAST (P52892) Putative alanine aminotransferase (EC 2.6.1.2)|
           (Glutamic--pyruvic transaminase) (GPT)
           (Glutamic--alanine transaminase)
          Length = 507

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 103 GXMYSXXXIXXPQRAMDVAKSAGKEPDVYYCLKL 2
           G MY    +  P++A+  ++  G EPD +YC  L
Sbjct: 423 GAMYLFPRLVLPKKALCESERLGIEPDEFYCTSL 456


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,502,693
Number of Sequences: 219361
Number of extensions: 62248
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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