ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25m04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB073084.1| Hordeum vulgare HvProT mRNA for proline transporter, complete cds Length = 2161 Score = 1041 bits (525), Expect = 0.0 Identities = 539/541 (99%), Gaps = 2/541 (0%) Strand = Plus / Minus Query: 110 gcagagagagactagttaatggaagcgctaaaatgaaggtgaggcgtgctacatcatgca 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1678 gcagagagagactagttaatggaagcgctaaaatgaaggtgaggcgtgctacatcatgca 1619 Query: 170 gctagttgcgtcgatgaagggaaactcctcagagaagcagcttgctggagagcagagcag 229 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1618 gctagttgcgtcgatgaagggaaactcct-agagaagcagcttgctggagagcagagcag 1560 Query: 230 ttggtgc-gtgagaaactcagacatcggcgaagatatgatattctttggagtctcgggcg 288 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1559 ttggtgccgtgagaaactcagacatcggcgaagatatgatattctttggagtctcgggcg 1500 Query: 289 atgagcctgagcgcggcgatagcagcggtgatggagaggatggtgaagaagacgatgttg 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 atgagcctgagcgcggcgatagcagcggtgatggagaggatggtgaagaagacgatgttg 1440 Query: 349 agccagtgccatgacttctgcagcgaggagaggcgttgcctgttggagacgaggtacata 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 agccagtgccatgacttctgcagcgaggagaggcgttgcctgttggagacgaggtacata 1380 Query: 409 tggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggctcatgaag 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 tggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggctcatgaag 1320 Query: 469 tcccccaggaagggcagcatcgcggccatgagcgtgttgacggccaggtaccctcccctc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1319 tcccccaggaagggcagcatcgcggccatgagcgtgttgacggccaggtaccctcccctc 1260 Query: 529 acgcccaccctgaatatcacgttgtgcatcgcgaacgggcctcccaccttgctcccgaac 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1259 acgcccaccctgaatatcacgttgtgcatcgcgaacgggcctcccaccttgctcccgaac 1200 Query: 589 cgggtgtccaggtactcgtacatgggcgacgcgaagatgtgtagtgctatgactgtctgg 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1199 cgggtgtccaggtactcgtacatgggcgacgcgaagatgtgtagtgctatgactgtctgg 1140 Query: 649 a 649 | Sbjct: 1139 a 1139 Score = 176 bits (89), Expect = 6e-41 Identities = 89/89 (100%) Strand = Plus / Minus Query: 1 cagtaacagctcagtactatgcgataatactgttgtgtactactaccagtagtagagtag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1787 cagtaacagctcagtactatgcgataatactgttgtgtactactaccagtagtagagtag 1728 Query: 61 gagtagttggctagctattgttgtcgcta 89 ||||||||||||||||||||||||||||| Sbjct: 1727 gagtagttggctagctattgttgtcgcta 1699
>emb|X95737.1|ATPROT1 A.thaliana mRNA for proline transporter 1 Length = 1490 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 ||||||||||||||| || | ||| ||||||||||||||||| | || ||||| ||||| Sbjct: 1212 gtacatatggttggctagaatgaatgtgagagggaatgtgctcactgcaccagttaggct 1153 Query: 462 catgaagtcccccaggaagggcagca 487 ||||||||| || ||||| ||||||| Sbjct: 1152 catgaagtcaccgaggaacggcagca 1127
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 114294 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 114353 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 114354 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 114397
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 24738747 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 24738806 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 24738807 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 24738850 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 25169410 gatggtgaagaagccgatgttgagc 25169386 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 18153411 gatggtgaagaagtcgatgttgagc 18153387
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 34266 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 34325 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 34326 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 34369
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 24655577 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 24655636 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 24655637 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 24655680 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 25260719 gatggtgaagaagccgatgttgagc 25260695 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 18146952 gatggtgaagaagtcgatgttgagc 18146928
>dbj|AK067118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096E03, full insert sequence Length = 2278 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 1793 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 1734 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 1733 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 1690
>dbj|AK062005.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D10, full insert sequence Length = 1690 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 1222 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 1163 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 1162 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 1119
>dbj|AB022783.1| Oryza sativa mRNA for amino acid permease, complete cds Length = 1863 Score = 71.9 bits (36), Expect = 3e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 439 gtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcggccatg 498 |||||||| || || || |||||||||||||| || |||||||| ||||||||||||| Sbjct: 1372 gtgctgagtgcacccgtcaggctcatgaagtcgccaaggaaggggagcatcgcggccacc 1313 Query: 499 agcgtgttgacggccaggtaccctcccctcacgcccaccctgaa 542 | |||||||||| |||||| ||||| || || ||||| ||||| Sbjct: 1312 aaggtgttgacggtcaggtagcctcctctgacacccactctgaa 1269
>gb|AY108640.1| Zea mays PCO121284 mRNA sequence Length = 1610 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Minus Query: 400 aggtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgagg 459 |||||||| || || |||||||| || || || ||||| |||||||| || || || ||| Sbjct: 1309 aggtacatgtgatttgcgagcacaaacgtcagcgggaaggtgctgagggcgcccgtcagg 1250 Query: 460 ctcatgaagtcccccaggaagggcagcatcgcggccatgagcgtgttgacggccaggtac 519 ||||||||||| || ||||| || |||| |||||||| |||||||| || | |||||| Sbjct: 1249 ctcatgaagtcgccgaggaatgggagcaccgcggccaccagcgtgttcaccgtcaggtag 1190 Query: 520 cctcc 524 ||||| Sbjct: 1189 cctcc 1185
>dbj|AB075903.2| Avicennia marina Bet/ProT2 mRNA for betaine/proline transporter, complete cds Length = 1640 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 427 gtgagagggaatgtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagc 486 |||||||| || |||||||| ||||| |||||||||||||| ||||||| ||| |||||| Sbjct: 1300 gtgagaggaaacgtgctgagggcccccgtgaggctcatgaaatcccccaagaatggcagc 1241 Query: 487 a 487 | Sbjct: 1240 a 1240
>dbj|AB075902.2| Avicennia marina Bet/ProT1 mRNA for betaine/proline transporter, complete cds Length = 1726 Score = 65.9 bits (33), Expect = 2e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 403 tacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggctc 462 ||||| |||||||| || | |||||| || ||||||||||||| ||||| || |||||| Sbjct: 1304 tacatgtggttggcaagaatgaaggtaagggggaatgtgctgatagcccccgttaggctc 1245 Query: 463 atgaagtcccccaggaagggcagca 487 |||||||| ||||| || ||||||| Sbjct: 1244 atgaagtctcccagaaaaggcagca 1220
>ref|NM_129215.2| Arabidopsis thaliana ProT3 (PROLINE TRANSPORTER 3); amino acid permease AT2G36590 (ProT3) mRNA, complete cds Length = 1924 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| || || ||||||||||| | || ||||||||||| Sbjct: 1325 gtacatgtggttggctagaatgaatgtaagggggaatgtgctcactgcaccagtgaggct 1266 Query: 462 catgaagtcccccaggaagggca 484 |||||||||||| ||||| |||| Sbjct: 1265 catgaagtccccaaggaacggca 1243
>ref|NM_129547.2| Arabidopsis thaliana ProT1; amino acid permease AT2G39890 (ProT1) mRNA, complete cds Length = 1801 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| ||||||||||||||||| | || ||||| ||||| Sbjct: 1516 gtacatgtggttggctagaatgaatgtgagagggaatgtgctcactgcaccagttaggct 1457 Query: 462 catgaagtcccccaggaagggca 484 ||||||||| || ||||| |||| Sbjct: 1456 catgaagtcaccgaggaacggca 1434
>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence Length = 108847 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| ||||||||||||||||| | || ||||| ||||| Sbjct: 26707 gtacatgtggttggctagaatgaatgtgagagggaatgtgctcactgcaccagttaggct 26648 Query: 462 catgaagtcccccaggaagggca 484 ||||||||| || ||||| |||| Sbjct: 26647 catgaagtcaccgaggaacggca 26625
>gb|AC006919.6| Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence Length = 104364 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| || || ||||||||||| | || ||||||||||| Sbjct: 92326 gtacatgtggttggctagaatgaatgtaagggggaatgtgctcactgcaccagtgaggct 92385 Query: 462 catgaagtcccccaggaagggca 484 |||||||||||| ||||| |||| Sbjct: 92386 catgaagtccccaaggaacggca 92408
>emb|BX820750.1|CNS0A8L6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZG12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1570 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| ||||||||||||||||| | || ||||| ||||| Sbjct: 1403 gtacatgtggttggctagaatgaatgtgagagggaatgtgctcactgcaccagttaggct 1344 Query: 462 catgaagtcccccaggaagggca 484 ||||||||| || ||||| |||| Sbjct: 1343 catgaagtcaccgaggaacggca 1321
>gb|BT004018.1| Arabidopsis thaliana clone RAFL15-21-B12 (R20531) putative proline transporter (At2g36590) mRNA, complete cds Length = 1538 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| || || ||||||||||| | || ||||||||||| Sbjct: 1250 gtacatgtggttggctagaatgaatgtaagggggaatgtgctcactgcaccagtgaggct 1191 Query: 462 catgaagtcccccaggaagggca 484 |||||||||||| ||||| |||| Sbjct: 1190 catgaagtccccaaggaacggca 1168
>gb|AY087868.1| Arabidopsis thaliana clone 39048 mRNA, complete sequence Length = 1682 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| ||||||||||||||||| | || ||||| ||||| Sbjct: 1404 gtacatgtggttggctagaatgaatgtgagagggaatgtgctcactgcaccagttaggct 1345 Query: 462 catgaagtcccccaggaagggca 484 ||||||||| || ||||| |||| Sbjct: 1344 catgaagtcaccgaggaacggca 1322
>gb|AY086068.1| Arabidopsis thaliana clone 20959 mRNA, complete sequence Length = 1544 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| || || ||||||||||| | || ||||||||||| Sbjct: 1325 gtacatgtggttggctagaatgaatgtaagggggaatgtgctcactgcaccagtgaggct 1266 Query: 462 catgaagtcccccaggaagggca 484 |||||||||||| ||||| |||| Sbjct: 1265 catgaagtccccaaggaacggca 1243
>ref|XM_476343.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1591 Score = 58.0 bits (29), Expect = 4e-05 Identities = 110/137 (80%) Strand = Plus / Minus Query: 433 gggaatgtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcg 492 ||||| |||||||| || || || |||||||||||||| || ||||| || |||||||| Sbjct: 1192 gggaaggtgctgagagctccggtcaggctcatgaagtcgccaaggaatgggagcatcgca 1133 Query: 493 gccatgagcgtgttgacggccaggtaccctcccctcacgcccaccctgaatatcacgttg 552 || | | |||||||| | |||||| ||||| || || ||||| ||||| ||||| ||| Sbjct: 1132 gctaccaaggtgttgacagtcaggtagcctcctcttacacccactctgaacatcacattg 1073 Query: 553 tgcatcgcgaacgggcc 569 || ||||| || ||||| Sbjct: 1072 tggatcgcaaaagggcc 1056
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 433 gggaatgtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcg 492 ||||| |||||||| || || || |||||||||||||| || ||||| || |||||||| Sbjct: 48186 gggaaggtgctgagagctccggtcaggctcatgaagtcgccaaggaatgggagcatcgca 48245 Query: 493 gccatgagcgtgttgacggccaggtaccctcccctcacgcccaccctgaatatcacgttg 552 || | | |||||||| | |||||| ||||| || || ||||| ||||| ||||| ||| Sbjct: 48246 gctaccaaggtgttgacagtcaggtagcctcctcttacacccactctgaacatcacattg 48305 Query: 553 tgcatcgcgaacgggcc 569 || ||||| || ||||| Sbjct: 48306 tggatcgcaaaagggcc 48322
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 58.0 bits (29), Expect = 4e-05 Identities = 110/137 (80%) Strand = Plus / Plus Query: 433 gggaatgtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcg 492 ||||| |||||||| || || || |||||||||||||| || ||||| || |||||||| Sbjct: 47485 gggaaggtgctgagagctccggtcaggctcatgaagtcgccaaggaatgggagcatcgca 47544 Query: 493 gccatgagcgtgttgacggccaggtaccctcccctcacgcccaccctgaatatcacgttg 552 || | | |||||||| | |||||| ||||| || || ||||| ||||| ||||| ||| Sbjct: 47545 gctaccaaggtgttgacagtcaggtagcctcctcttacacccactctgaacatcacattg 47604 Query: 553 tgcatcgcgaacgggcc 569 || ||||| || ||||| Sbjct: 47605 tggatcgcaaaagggcc 47621
>dbj|AK066298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062C01, full insert sequence Length = 1591 Score = 58.0 bits (29), Expect = 4e-05 Identities = 110/137 (80%) Strand = Plus / Minus Query: 433 gggaatgtgctgagcgccccagtgaggctcatgaagtcccccaggaagggcagcatcgcg 492 ||||| |||||||| || || || |||||||||||||| || ||||| || |||||||| Sbjct: 1192 gggaaggtgctgagagctccggtcaggctcatgaagtcgccaaggaatgggagcatcgca 1133 Query: 493 gccatgagcgtgttgacggccaggtaccctcccctcacgcccaccctgaatatcacgttg 552 || | | |||||||| | |||||| ||||| || || ||||| ||||| ||||| ||| Sbjct: 1132 gctaccaaggtgttgacagtcaggtagcctcctcttacacccactctgaacatcacattg 1073 Query: 553 tgcatcgcgaacgggcc 569 || ||||| || ||||| Sbjct: 1072 tggatcgcaaaagggcc 1056
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 315 ggtgatggagaggatggtgaagaagacgat 344 |||||||||||||||||||| ||||||||| Sbjct: 1245718 ggtgatggagaggatggtgatgaagacgat 1245689
>ref|XM_572119.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 4345 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 315 ggtgatggagaggatggtgaagaagacgat 344 |||||||||||||||||||| ||||||||| Sbjct: 2317 ggtgatggagaggatggtgatgaagacgat 2346
>dbj|AB075904.1| Avicennia marina Bet/ProT3 mRNA for betaine/proline transporter, partial cds Length = 1432 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 403 tacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggctc 462 ||||| |||||||| || | ||||||||| || || |||||||| ||||| || |||||| Sbjct: 1166 tacatgtggttggcaagaatgaaggtgaggggaaacgtgctgagagcccccgtcaggctc 1107 Query: 463 atgaa 467 ||||| Sbjct: 1106 atgaa 1102
>ref|XM_468227.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 399 tgatggcgaggatggtgaagaagacgaagttg 368
>ref|XM_507542.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA Length = 1696 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 466 tgatggcgaggatggtgaagaagacgaagttg 435
>ref|XM_507541.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA Length = 1696 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 466 tgatggcgaggatggtgaagaagacgaagttg 435
>ref|XM_507023.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA Length = 1741 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 481 tgatggcgaggatggtgaagaagacgaagttg 450
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 33712041 tgatggcgaggatggtgaagaagacgaagttg 33712072 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 14011695 gatggtgaagaagtcgatgttgagc 14011719
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12 Length = 133205 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 80448 tgatggcgaggatggtgaagaagacgaagttg 80479
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 42908 tgatggcgaggatggtgaagaagacgaagttg 42939
>dbj|AK119191.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H03, full insert sequence Length = 1587 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 399 tgatggcgaggatggtgaagaagacgaagttg 368
>dbj|AK106174.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C06, full insert sequence Length = 1696 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 466 tgatggcgaggatggtgaagaagacgaagttg 435
>dbj|AK104731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C07, full insert sequence Length = 1696 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 466 tgatggcgaggatggtgaagaagacgaagttg 435
>dbj|AK068367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147C17, full insert sequence Length = 1742 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaagacgatgttg 348 |||||| |||||||||||||||||||| |||| Sbjct: 481 tgatggcgaggatggtgaagaagacgaagttg 450
>emb|BX821223.1|CNS0AA5Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL26ZF09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 550 Score = 46.1 bits (23), Expect = 0.14 Identities = 68/83 (81%) Strand = Plus / Minus Query: 402 gtacatatggttggcgagcacgaaggtgagagggaatgtgctgagcgccccagtgaggct 461 |||||| |||||||| || | ||| |||||| ||||||| || | || ||||| ||||| Sbjct: 268 gtacatgtggttggctagaatgaatgtgagaaggaatgtactcactgcaccagttaggct 209 Query: 462 catgaagtcccccaggaagggca 484 ||||||||| || ||||| |||| Sbjct: 208 catgaagtcaccgaggaacggca 186
>gb|AC107744.8| Mus musculus chromosome 5, clone RP23-325M7, complete sequence Length = 152515 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 210 cttgctggagagcagagcagtt 231 |||||||||||||||||||||| Sbjct: 81750 cttgctggagagcagagcagtt 81771
>gb|AF274032.1|AF274032 Atriplex hortensis proline/glycine betaine transporter mRNA, complete cds Length = 1684 Score = 44.1 bits (22), Expect = 0.57 Identities = 52/62 (83%) Strand = Plus / Minus Query: 424 aaggtgagagggaatgtgctgagcgccccagtgaggctcatgaagtcccccaggaagggc 483 |||||||| ||||| ||||||| || || || ||||||||||| ||||| ||||| ||| Sbjct: 1241 aaggtgagcgggaaggtgctgattgctcctgtaaggctcatgaaatcccctaggaaaggc 1182 Query: 484 ag 485 || Sbjct: 1181 ag 1180
>ref|XM_512252.1| PREDICTED: Pan troglodytes DOT1-like, histone H3 methyltransferase (LOC455566), mRNA Length = 8310 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 5688 gcagcttgctggagagaagagcagt 5712
>ref|NM_194535.1| Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0015O22.1), mRNA Length = 2967 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 61 gatggtgaagaagtcgatgttgagc 37
>ref|NM_183723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 61 gatggtgaagaagtcgatgttgagc 37
>ref|NM_032482.1| Homo sapiens DOT1-like, histone H3 methyltransferase (S. cerevisiae) (DOT1L), mRNA Length = 4889 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 2550 gcagcttgctggagagaagagcagt 2574
>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01, complete sequence Length = 161741 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 65386 gatggtgaagaagccgatgttgagc 65362
>gb|AC148393.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0044A08 map near S6115, complete sequence Length = 158583 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 26955 gatggtgaagaagtcgatgttgagc 26979
>gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062O09 map near S6115, complete sequence Length = 148654 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 120658 gatggtgaagaagtcgatgttgagc 120682
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 58016 gatggtgaagaagtcgatgttgagc 57992
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 2880 gatggtgaagaagtcgatgttgagc 2904
>gb|AC144452.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0025G07, complete sequence Length = 167136 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 112514 gatggtgaagaagtcgatgttgagc 112538
>gb|AF191103.1| Macaca mulatta clone RTD1.2 theta defensin 1b precursor, gene, complete cds Length = 2548 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 1218 tgatggagaggatggtgaaga 1198
>ref|XM_946671.1| Theileria annulata strain Ankara hypothetical protein (TA16025) partial mRNA Length = 1683 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 gatggagaggatggtgaagaa 338 ||||||||||||||||||||| Sbjct: 1018 gatggagaggatggtgaagaa 1038
>gb|AC091537.2| Rattus norvegicus strain Brown Norway clone RP31-78C13, complete sequence Length = 119664 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 ctcccctcacgcccaccctga 541 ||||||||||||||||||||| Sbjct: 23841 ctcccctcacgcccaccctga 23821
>gb|AC091000.2| Rattus norvegicus strain Brown Norway clone RP31-485F9, complete sequence Length = 168533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 ctcccctcacgcccaccctga 541 ||||||||||||||||||||| Sbjct: 159841 ctcccctcacgcccaccctga 159821
>gb|AC184714.1| Macaca mulatta clone CH250-396P23 map human ortholog 8p23.1, complete sequence Length = 174987 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 154835 tgatggagaggatggtgaaga 154855 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 135404 tgatggagaggatggtgaaga 135424
>gb|AC184713.1| Macaca mulatta clone CH250-569D9 map human ortholog 8p23.1, complete sequence Length = 153308 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 140269 tgatggagaggatggtgaaga 140289 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 120838 tgatggagaggatggtgaaga 120858
>gb|AC184712.1| Macaca mulatta clone CH250-14G4 map human ortholog 8p23.1, complete sequence Length = 190509 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 173080 tgatggagaggatggtgaaga 173100 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 153649 tgatggagaggatggtgaaga 153669
>gb|AC184711.1| Macaca mulatta clone CH250-63N16 map human ortholog 8p23.1, complete sequence Length = 200536 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 187587 tgatggagaggatggtgaaga 187607 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaaga 337 ||||||||||||||||||||| Sbjct: 168156 tgatggagaggatggtgaaga 168176
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 537083 gatggtgaagaagtcgatgttgagc 537107
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete sequence Length = 149978 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 41 tactaccagtagtagagtaggagta 65 |||||||||||||||||||| |||| Sbjct: 41174 tactaccagtagtagagtagtagta 41150
>gb|AF509504.1| Homo sapiens DOT1-like protein (DOT1L) mRNA, complete cds Length = 4889 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 2550 gcagcttgctggagagaagagcagt 2574
>dbj|AK095280.1| Homo sapiens cDNA FLJ37961 fis, clone CTONG2009643 Length = 3658 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 706 gcagcttgctggagagaagagcagt 730
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete sequence Length = 189349 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 4691 gatggtgaagaagtcgatgttgagc 4715
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 2960834 gatggtgaagaagccgatgttgagc 2960858
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 12519177 gatggtgaagaagtcgatgttgagc 12519153
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 41 tactaccagtagtagagtaggagta 65 |||||||||||||||||||| |||| Sbjct: 16423075 tactaccagtagtagagtagtagta 16423051 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 537083 gatggtgaagaagtcgatgttgagc 537107
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 3466116 gatggtgaagaagccgatgttgagc 3466140
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 12235402 gatggtgaagaagtcgatgttgagc 12235426 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gaagggcagcatcgcggcca 496 |||||||||||||||||||| Sbjct: 29003668 gaagggcagcatcgcggcca 29003649
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 11826053 gatggtgaagaagtcgatgttgagc 11826077 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gtaggagtagttggctagct 76 |||||||||||||||||||| Sbjct: 32140351 gtaggagtagttggctagct 32140370
>gb|AC008046.4|AC008046 Arabidopsis thaliana chromosome I BAC F5A13 genomic sequence, complete sequence Length = 94618 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 427 gtgagagggaatgtgctgagcgccccagtgaggctcatgaa 467 ||||||||||| ||||| | || ||||||||||||||||| Sbjct: 44746 gtgagagggaacgtgcttattgctccagtgaggctcatgaa 44706
>dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1451_A02 Length = 135861 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 19004 gatggtgaagaagccgatgttgagc 19028
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 38338 gatggtgaagaagtcgatgttgagc 38362
>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B05 Length = 117057 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 81333 gatggtgaagaagtcgatgttgagc 81357
>dbj|AP005550.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1058_F03 Length = 150486 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 134597 gatggtgaagaagccgatgttgagc 134621
>gb|AY828160.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-2 noaCRR1 retrotransposon, partial sequence Length = 4436 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 2279 gatggtgaagaagtcgatgttgagc 2255
>gb|AY828036.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH4-2 noaCRR1 retrotransposon, partial sequence Length = 4409 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 2253 gatggtgaagaagccgatgttgagc 2229
>gb|AY827965.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-4 noaCRR1 retrotransposon, partial sequence Length = 4258 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 2099 gatggtgaagaagtcgatgttgagc 2075
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 41 tactaccagtagtagagtaggagta 65 |||||||||||||||||||| |||| Sbjct: 16431316 tactaccagtagtagagtagtagta 16431292 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 537080 gatggtgaagaagtcgatgttgagc 537104
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 12598484 gatggtgaagaagtcgatgttgagc 12598460
>emb|AL663004.3|OSJN00207 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0049I21, complete sequence Length = 141935 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 92720 gatggtgaagaagccgatgttgagc 92744
>emb|AL662951.3|OSJN00154 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011E07, complete sequence Length = 165094 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 gatggtgaagaagacgatgttgagc 351 ||||||||||||| ||||||||||| Sbjct: 21909 gatggtgaagaagccgatgttgagc 21933
>gb|AC004490.1|AC004490 Homo sapiens chromosome 19, cosmid R29381, complete sequence Length = 39143 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 35876 gcagcttgctggagagaagagcagt 35900
>dbj|AB058717.1| Homo sapiens mRNA for KIAA1814 protein, partial cds Length = 5576 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 1212 gcagcttgctggagagaagagcagt 1236
>dbj|AK074120.1| Homo sapiens mRNA for FLJ00192 protein Length = 4540 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 gcagcttgctggagagcagagcagt 230 |||||||||||||||| |||||||| Sbjct: 2215 gcagcttgctggagagaagagcagt 2239
>ref|XM_638049.1| Dictyostelium discoideum amardillo repeat-containing protein (DDB0229896), partial mRNA Length = 3504 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ggagaggatggtgaagaaga 340 |||||||||||||||||||| Sbjct: 1681 ggagaggatggtgaagaaga 1700
>ref|XM_475979.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1446 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gaagggcagcatcgcggcca 496 |||||||||||||||||||| Sbjct: 1206 gaagggcagcatcgcggcca 1187
>gb|AC108777.7| Mus musculus chromosome 18, clone RP23-368H22, complete sequence Length = 216024 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctcctcagagaagcagcttg 213 |||||||||||||||||||| Sbjct: 47376 ctcctcagagaagcagcttg 47395
>ref|XM_959093.1| Neurospora crassa OR74A hypothetical protein (NCU03137.1) partial mRNA Length = 2619 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaagaaga 340 |||||||||||||||||| ||||| Sbjct: 2070 tgatggagaggatggtgaggaaga 2093
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gaagggcagcatcgcggcca 496 |||||||||||||||||||| Sbjct: 13723 gaagggcagcatcgcggcca 13704
>ref|XM_330572.1| Neurospora crassa OR74A hypothetical protein (NCU03137.1) partial mRNA Length = 2619 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 tgatggagaggatggtgaagaaga 340 |||||||||||||||||| ||||| Sbjct: 2070 tgatggagaggatggtgaggaaga 2093
>gb|AC126041.3| Mus musculus BAC clone RP24-268A23 from chromosome 18, complete sequence Length = 168391 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ctcctcagagaagcagcttg 213 |||||||||||||||||||| Sbjct: 111953 ctcctcagagaagcagcttg 111972
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 cctcccctcacgcccaccct 539 |||||||||||||||||||| Sbjct: 53770 cctcccctcacgcccaccct 53751
>gb|AC146133.3| Pan troglodytes BAC clone RP43-38C10 from 7, complete sequence Length = 168763 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 63895 tggagaggatgatgaagaagacga 63918
>gb|BC057764.1| Homo sapiens hypothetical protein LOC554226, mRNA (cDNA clone IMAGE:4831280) Length = 1426 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 411 tggagaggatgatgaagaagacga 434
>gb|BC036510.1| Homo sapiens cDNA clone IMAGE:5266473, **** WARNING: chimeric clone **** Length = 3274 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 212 tggagaggatgatgaagaagacga 235
>emb|AL353626.5| Human DNA sequence from clone RP11-318K12 on chromosome 9 Contains a novel gene, a pseudogene similar to part of membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) (M17S2), a pseudogene similar to part of novel gene (ankyrin-related UNQ2430) and a CpG island, complete sequence Length = 176470 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 34040 tggagaggatgatgaagaagacga 34017
>emb|AL163202.2|HS21C002 Homo sapiens chromosome 21 segment HS21C002 Length = 340000 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 72559 tggagaggatgatgaagaagacga 72582
>gb|AC161593.2| Mus musculus BAC clone RP24-187P11 from chromosome 9, complete sequence Length = 155445 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tcccccaggaagggcagcat 488 |||||||||||||||||||| Sbjct: 46975 tcccccaggaagggcagcat 46994
>emb|BX842637.1| Neurospora crassa DNA linkage group I cosmid contig 5C2 Length = 98769 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tgatggagaggatggtgaagaaga 340 |||||||||||||||||| ||||| Sbjct: 43636 tgatggagaggatggtgaggaaga 43613
>gb|BC038666.1| Homo sapiens Fanconi anemia, complementation group D2, mRNA (cDNA clone IMAGE:5268117), containing frame-shift errors Length = 5254 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaggatggtgaagaagacga 343 |||||||||||||||||||| Sbjct: 4444 gaggatggtgaagaagacga 4463
>emb|BX001034.6| Human DNA sequence from clone RP11-21H4 on chromosome 9 Contains a novel pseudogene and a novel zinc finger pseudogene, complete sequence Length = 173100 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 100764 tggagaggatgatgaagaagacga 100787
>gb|AC125634.1| Homo sapiens 3 BAC RP11-512E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162478 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 53007 tggagaggatgatgaagaagacga 52984
>emb|AL832427.1|HSM803735 Homo sapiens mRNA; cDNA DKFZp762A223 (from clone DKFZp762A223) Length = 3448 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaggatggtgaagaagacga 343 |||||||||||||||||||| Sbjct: 2684 gaggatggtgaagaagacga 2703
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 gggcctcccaccttgctccc 584 |||||||||||||||||||| Sbjct: 3260751 gggcctcccaccttgctccc 3260732
>gb|AC182642.2| Pan troglodytes BAC clone CH251-216C21 from chromosome 21, complete sequence Length = 187371 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 76718 tggagaggatgatgaagaagacga 76741
>gb|AC073360.20| Homo sapiens 3 BAC RP11-519L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 47897 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atactgttgtgtactactac 46 |||||||||||||||||||| Sbjct: 15009 atactgttgtgtactactac 15028
>ref|XM_929438.1| PREDICTED: Homo sapiens similar to ankyrin repeat domain 30A (LOC646512), mRNA Length = 1090 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 54 tggagaggatgatgaagaagacga 77
>ref|XM_927774.1| PREDICTED: Homo sapiens similar to RIKEN cDNA 4930532L20 (LOC644669), mRNA Length = 377 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 8 tggagaggatgatgaagaagacga 31
>ref|XM_927313.1| PREDICTED: Homo sapiens similar to RIKEN cDNA 4930532L20 (LOC644074), mRNA Length = 831 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 8 tggagaggatgatgaagaagacga 31
>gb|AF340183.1|AF340183 Homo sapiens Fanconi anemia complementation group D2 protein (FANCD2) mRNA, complete cds, alternatively spliced Length = 4455 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaggatggtgaagaagacga 343 |||||||||||||||||||| Sbjct: 4342 gaggatggtgaagaagacga 4361
>gb|AC098826.4| Homo sapiens BAC clone RP11-629P16 from 2, complete sequence Length = 120117 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 84822 tggagaggatgatgaagaagacga 84799
>gb|AC114263.2| Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence Length = 151802 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ggagaggatggtgaagaaga 340 |||||||||||||||||||| Sbjct: 79524 ggagaggatggtgaagaaga 79543
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gtaggagtagttggctagct 76 |||||||||||||||||||| Sbjct: 11104 gtaggagtagttggctagct 11123
>gb|AC108673.11| Homo sapiens 3 BAC RP11-434H6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137864 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 acggccaggtaccctcccct 527 |||||||||||||||||||| Sbjct: 57300 acggccaggtaccctcccct 57319
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ctcctcagagaagcagcttg 213 |||||||||||||||||||| Sbjct: 3529090 ctcctcagagaagcagcttg 3529071
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 gtagtagagtaggagtagttggct 72 ||||||||||||||| |||||||| Sbjct: 1106587 gtagtagagtaggagcagttggct 1106564
>dbj|AK074406.1| Homo sapiens cDNA FLJ23826 fis, clone HUV00813, highly similar to Homo sapiens Fanconi anemia complementation group D2 protein (FANCD2) mRNA Length = 1729 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaggatggtgaagaagacga 343 |||||||||||||||||||| Sbjct: 1597 gaggatggtgaagaagacga 1616
>dbj|AK106883.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F05, full insert sequence Length = 1760 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gaagggcagcatcgcggcca 496 |||||||||||||||||||| Sbjct: 1285 gaagggcagcatcgcggcca 1266
>emb|AL445643.12| Human DNA sequence from clone RP11-350D23 on chromosome 9, complete sequence Length = 188693 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 155235 tggagaggatgatgaagaagacga 155212
>dbj|AP005901.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-454P7, complete sequence Length = 194034 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 168744 tggagaggatgatgaagaagacga 168721
>ref|NM_001018115.1| Homo sapiens Fanconi anemia, complementation group D2 (FANCD2), transcript variant 2, mRNA Length = 5134 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gaggatggtgaagaagacga 343 |||||||||||||||||||| Sbjct: 4357 gaggatggtgaagaagacga 4376
>gb|AC164438.3| Mus musculus BAC clone RP23-62L19 from chromosome 9, complete sequence Length = 205793 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tcccccaggaagggcagcat 488 |||||||||||||||||||| Sbjct: 193298 tcccccaggaagggcagcat 193317
>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence Length = 206995 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ggtgatggagaggatggtga 334 |||||||||||||||||||| Sbjct: 162150 ggtgatggagaggatggtga 162169
>emb|CT010511.9| Mouse DNA sequence from clone RP23-222I19 on chromosome 14, complete sequence Length = 181740 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 gaagggaaactcctcagaga 204 |||||||||||||||||||| Sbjct: 91631 gaagggaaactcctcagaga 91612
>emb|BX000449.4| Human DNA sequence from clone RP11-287N12 on chromosome 9, complete sequence Length = 164006 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 122989 tggagaggatgatgaagaagacga 123012
>dbj|AP001464.1| Homo sapiens genomic DNA, chromosome 21q11.1, clone:21B49A22, centromere region, complete sequence Length = 115915 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tggagaggatggtgaagaagacga 343 ||||||||||| |||||||||||| Sbjct: 72559 tggagaggatgatgaagaagacga 72582 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,203,037 Number of Sequences: 3902068 Number of extensions: 4203037 Number of successful extensions: 80782 Number of sequences better than 10.0: 127 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79847 Number of HSP's gapped (non-prelim): 933 length of query: 649 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 626 effective length of database: 17,143,297,704 effective search space: 10731704362704 effective search space used: 10731704362704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
