ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHS3_YEAST (P29465) Chitin synthase 3 (EC 2.4.1.16) (Chitin-UDP ... 29 6.2
2GLND_RHILO (Q98C27) [Protein-PII] uridylyltransferase (EC 2.7.7.... 29 8.1

>CHS3_YEAST (P29465) Chitin synthase 3 (EC 2.4.1.16) (Chitin-UDP|
            acetyl-glucosaminyl transferase 3) (Class-IV chitin
            synthase 3)
          Length = 1165

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 116  GLVVTCT*QTRGSCWWSCIYVCSI 45
            GL+V  T       WW C+Y+C++
Sbjct: 1071 GLIVVITATRWSYLWWMCVYICAL 1094



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>GLND_RHILO (Q98C27) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII|
           uridylyl-transferase) (Uridylyl-removing enzyme) (UTase)
          Length = 933

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 500 VTHAEITTRGDMAVNVFHVTDVAGRPAD 417
           +  A ITT G+  ++ F+VTD+ G+  D
Sbjct: 874 IASAHITTFGEKVIDTFYVTDLTGQKID 901


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,737,938
Number of Sequences: 219361
Number of extensions: 885477
Number of successful extensions: 2241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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