ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25j14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C05, full insert sequence Length = 575 Score = 244 bits (123), Expect = 2e-61 Identities = 209/240 (87%) Strand = Plus / Minus Query: 276 tatgattcattttctttctcagccatttcctttttataagcctgcaacctttctttaaat 335 |||||||| || |||| |||||||||||||||||||| ||| ||||| |||||| || Sbjct: 404 tatgattccttgtcttgttcagccatttcctttttataggccagcaactgttctttgaac 345 Query: 336 ttcttgctctcttcaaagtttgcctttctcttcacagctttctcctgccggaagcaccta 395 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | Sbjct: 344 ttcttgctctcttcaaagtttgcctttctcttcaaagctttctcttgccggaagcactga 285 Query: 396 tcaagcttaatcttaagatctgtgcattcaccaaagaannnnnnnatggggtgatccaca 455 || |||||||||||||||||||||||||| ||||| || | ||| || |||||| Sbjct: 284 tctagcttaatcttaagatctgtgcattcgccaaaaaacttcttgacgggatggtccaca 225 Query: 456 tggcacttctggaattcttcgataatctcagcacacataggatgcctatgtaaggttaga 515 ||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 224 tggcacttctggaatgcttcaataatctcggcacacataggatgcctgtgtaaggttaga 165
>dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J23, full insert sequence Length = 2420 Score = 244 bits (123), Expect = 2e-61 Identities = 209/240 (87%) Strand = Plus / Minus Query: 276 tatgattcattttctttctcagccatttcctttttataagcctgcaacctttctttaaat 335 |||||||| || |||| |||||||||||||||||||| ||| ||||| |||||| || Sbjct: 381 tatgattccttgtcttgttcagccatttcctttttataggccagcaactgttctttgaac 322 Query: 336 ttcttgctctcttcaaagtttgcctttctcttcacagctttctcctgccggaagcaccta 395 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | Sbjct: 321 ttcttgctctcttcaaagtttgcctttctcttcaaagctttctcttgccggaagcactga 262 Query: 396 tcaagcttaatcttaagatctgtgcattcaccaaagaannnnnnnatggggtgatccaca 455 || |||||||||||||||||||||||||| ||||| || | ||| || |||||| Sbjct: 261 tctagcttaatcttaagatctgtgcattcgccaaaaaacttcttgacgggatggtccaca 202 Query: 456 tggcacttctggaattcttcgataatctcagcacacataggatgcctatgtaaggttaga 515 ||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 201 tggcacttctggaatgcttcaataatctcggcacacataggatgcctgtgtaaggttaga 142
>gb|AY107639.1| Zea mays PCO092697 mRNA sequence Length = 656 Score = 204 bits (103), Expect = 2e-49 Identities = 195/228 (85%) Strand = Plus / Minus Query: 290 tttctcagccatttcctttttataagcctgcaacctttctttaaatttcttgctctcttc 349 |||||| || |||||| |||| ||||||| |||| |||||||||| ||||||||||||| Sbjct: 505 tttctctgcaatttcccttttgtaagccttcaactgttctttaaatctcttgctctcttc 446 Query: 350 aaagtttgcctttctcttcacagctttctcctgccggaagcacctatcaagcttaatctt 409 |||||||||||||||||||| |||||||||||| |||||||| | ||| ||||| || || Sbjct: 445 aaagtttgcctttctcttcaaagctttctcctgtcggaagcagcgatctagcttgatttt 386 Query: 410 aagatctgtgcattcaccaaagaannnnnnnatggggtgatccacatggcacttctggaa 469 ||| |||||||| || || ||||| | |||||||||| ||||||||||||||| Sbjct: 385 aaggtctgtgcactctccgaagaacttcttgacagggtgatccagatggcacttctggaa 326 Query: 470 ttcttcgataatctcagcacacataggatgcctatgtaaggttagatg 517 |||||| |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 325 ttcttcaataatctcggcacacataggatgcctatgtaaagtcagatg 278
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 117 bits (59), Expect = 4e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 276 tatgattcattttctttctcagccatttcctttttataagcctgcaacctttctttaaat 335 |||||||| || |||| |||||||||||||||||||| ||| ||||| |||||| || Sbjct: 7630 tatgattccttgtcttgttcagccatttcctttttataggccagcaactgttctttgaac 7689 Query: 336 ttcttgctctcttcaaagtttgcctttctcttcacagctttct 378 |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 7690 ttcttgctctcttcaaagtttgcctttctcttcaaagctttct 7732 Score = 83.8 bits (42), Expect = 5e-13 Identities = 86/103 (83%) Strand = Plus / Plus Query: 381 tgccggaagcacctatcaagcttaatcttaagatctgtgcattcaccaaagaannnnnnn 440 |||||||||||| ||| |||||||||||||||||||||||||| ||||| || Sbjct: 7864 tgccggaagcactgatctagcttaatcttaagatctgtgcattcgccaaaaaacttcttg 7923 Query: 441 atggggtgatccacatggcacttctggaattcttcgataatct 483 | ||| || ||||||||||||||||||||| |||| ||||||| Sbjct: 7924 acgggatggtccacatggcacttctggaatgcttcaataatct 7966 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 486 gcacacataggatgcctatgtaaggttaga 515 ||||||||||||||||| |||||||||||| Sbjct: 8051 gcacacataggatgcctgtgtaaggttaga 8080
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 326 ttctttaaatttcttgctctcttcaaagtttgcctttctcttcacagctttct 378 |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| Sbjct: 21254351 ttctttgaatttcttgctctcttcgaagttagccttcctcttcaaagctttct 21254403
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 326 ttctttaaatttcttgctctcttcaaagtttgcctttctcttcacagctttct 378 |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||| Sbjct: 36886 ttctttgaatttcttgctctcttcgaagttagccttcctcttcaaagctttct 36938
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence Length = 134908 Score = 63.9 bits (32), Expect = 5e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 339 ttgctctcttcaaagtttgcctttctcttcacagctttct 378 ||||||| ||||||||| |||||||||||||||||||||| Sbjct: 128951 ttgctcttttcaaagttggcctttctcttcacagctttct 128912
>ref|XM_790484.1| PREDICTED: Strongylocentrotus purpuratus similar to exportin 1, CRM1 homolog (LOC590897), partial mRNA Length = 609 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 285 ttttctttctcagccatttcctt 307 ||||||||||||||||||||||| Sbjct: 254 ttttctttctcagccatttcctt 232
>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence Length = 152106 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 cattttctttctcagccatttc 304 |||||||||||||||||||||| Sbjct: 126288 cattttctttctcagccatttc 126267
>gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, complete sequence Length = 198340 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 283 cattttctttctcagccatttc 304 |||||||||||||||||||||| Sbjct: 138774 cattttctttctcagccatttc 138795
>emb|AL356285.9| Human DNA sequence from clone RP11-569O4 on chromosome 13 Contains the 5' end of the XPO4 gene for likely ortholog of mouse exportin 4, a CCR4-NOT transcription complex, subunit 4 (CNOT4) (NOT4, NOT4H, CLONE243) pseudogene, a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)(HNRNPA1) pseudogene, a pseudogene similar to part of peptidylprolyl isomerase A (cyclophilin A) (PPIA), a Laminin receptor 1 (67kD, ribosomal protein SA)(LAMR1)(LRP, p40, RPSA, 37LRP, LAMBR) pseudogene, the 3' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), two novel genes and three CpG islands, complete sequence Length = 183597 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 42 aagcacttattgtctatatatgatgg 67 |||||||||||||| ||||||||||| Sbjct: 149175 aagcacttattgtccatatatgatgg 149200
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 462 ttctggaattcttcgataatctcagc 487 ||||| |||||||||||||||||||| Sbjct: 104886 ttctgaaattcttcgataatctcagc 104911
>dbj|AK027853.1| Homo sapiens cDNA FLJ14947 fis, clone PLACE2000050 Length = 3132 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 42 aagcacttattgtctatatatgatgg 67 |||||||||||||| ||||||||||| Sbjct: 289 aagcacttattgtccatatatgatgg 264
>gb|AC153384.4| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203979 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 atatgatggaaatggactaacc 80 |||||||||||||||||||||| Sbjct: 180497 atatgatggaaatggactaacc 180518
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 462 ttctggaattcttcgataatctcagc 487 ||||| |||||||||||||||||||| Sbjct: 33892987 ttctgaaattcttcgataatctcagc 33893012
>emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-179A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180914 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 acttattgtctatatatgatggaaat 71 ||||||||||| |||||||||||||| Sbjct: 136156 acttattgtctctatatgatggaaat 136131
>ref|XM_508013.1| PREDICTED: Pan troglodytes similar to KIAA0185 (LOC450711), mRNA Length = 7176 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cacagctttctcctgccggaa 388 ||||||||||||||||||||| Sbjct: 6741 cacagctttctcctgccggaa 6721
>gb|AC102229.7| Mus musculus chromosome 15, clone RP24-70F9, complete sequence Length = 202156 Score = 42.1 bits (21), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 cagccacagnaaggaaatatgaac 115 ||||||||| |||||||||||||| Sbjct: 77434 cagccacagaaaggaaatatgaac 77411
>ref|XM_656258.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3746.2), mRNA Length = 1878 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 ttttctttctcagccatttcctttt 309 |||||||||||| |||||||||||| Sbjct: 1667 ttttctttctcatccatttcctttt 1643
>ref|NM_014976.1| Homo sapiens programmed cell death 11 (PDCD11), mRNA Length = 6416 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cacagctttctcctgccggaa 388 ||||||||||||||||||||| Sbjct: 5268 cacagctttctcctgccggaa 5248
>gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosome 17, complete sequence Length = 206180 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 tttgcctttctcttcacagct 374 ||||||||||||||||||||| Sbjct: 7116 tttgcctttctcttcacagct 7136
>ref|XM_754347.1| Ustilago maydis 521 hypothetical protein (UM03293.1) partial mRNA Length = 4521 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ctttctcagccatttcctttt 309 ||||||||||||||||||||| Sbjct: 637 ctttctcagccatttcctttt 617
>emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chromosome 6p12.3-21.1 Contains the 3' end of a gene for a novel protein similar to seven transmembrane receptor (Rhodopsin family), complete sequence Length = 131967 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ttttctttctcagccatttcc 305 ||||||||||||||||||||| Sbjct: 55540 ttttctttctcagccatttcc 55520
>emb|AL139339.22| Human DNA sequence from clone RP11-225H22 on chromosome 10 Contains the 3' end of the PDCD11 gene for programmed cell death 11, the 5' end of the NEURL gene for neuralized-like (Drosophila), two novel genes, the FAM26A gene for family with sequence similarity 26, member A, the FAM26B gene for family with sequence similarity 26, member B, the FAM26C gene for family with sequence similarity 26, member C and three CpG islands, complete sequence Length = 103826 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cacagctttctcctgccggaa 388 ||||||||||||||||||||| Sbjct: 21432 cacagctttctcctgccggaa 21412
>emb|CR602457.1| full-length cDNA clone CS0DI007YI24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1468 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cacagctttctcctgccggaa 388 ||||||||||||||||||||| Sbjct: 351 cacagctttctcctgccggaa 331
>gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, complete sequence Length = 160672 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 aagtttgcctttctcttcaca 371 ||||||||||||||||||||| Sbjct: 90359 aagtttgcctttctcttcaca 90379
>gb|AY007124.1| Homo sapiens clone CDABP0021 mRNA sequence Length = 1855 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 cacagctttctcctgccggaa 388 ||||||||||||||||||||| Sbjct: 1194 cacagctttctcctgccggaa 1214
>dbj|D80007.1| Homo sapiens KIAA0185 mRNA, complete cds Length = 5823 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cacagctttctcctgccggaa 388 ||||||||||||||||||||| Sbjct: 5221 cacagctttctcctgccggaa 5201
>gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, complete sequence Length = 163117 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 atgatggaaatggactaacc 80 |||||||||||||||||||| Sbjct: 12586 atgatggaaatggactaacc 12567
>ref|XM_455356.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06094g predicted mRNA Length = 1080 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tttctcagccatttcctttt 309 |||||||||||||||||||| Sbjct: 1038 tttctcagccatttcctttt 1019
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence Length = 180378 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tatgattcattttctttctc 295 |||||||||||||||||||| Sbjct: 124720 tatgattcattttctttctc 124739
>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence Length = 245784 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 taaatttcttgctctcttca 350 |||||||||||||||||||| Sbjct: 21811 taaatttcttgctctcttca 21830
>gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, complete sequence Length = 180594 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 aaagttgaagccgcaggatt 229 |||||||||||||||||||| Sbjct: 116994 aaagttgaagccgcaggatt 117013
>ref|XM_773946.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_49_50528_50965) partial mRNA Length = 438 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cacctatcaagcttaatctt 409 |||||||||||||||||||| Sbjct: 281 cacctatcaagcttaatctt 262
>gb|AC110784.3| Homo sapiens BAC clone RP11-417D8 from 7, complete sequence Length = 38891 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 caaagtttgcctttctcttc 368 |||||||||||||||||||| Sbjct: 20960 caaagtttgcctttctcttc 20979
>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence Length = 104336 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 tttcttgctctcttcaaagtttgc 358 ||||||||| |||||||||||||| Sbjct: 16110 tttcttgctgtcttcaaagtttgc 16133
>emb|AL450428.6| Human DNA sequence from clone RP11-264J11 on chromosome 9, complete sequence Length = 84808 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aaacatgaagtaaagaaaag 191 |||||||||||||||||||| Sbjct: 78123 aaacatgaagtaaagaaaag 78104
>gb|DQ450514.1| Brevipalpus phoenicis haplotype P13 cytochrome oxidase subunit 1 gene, partial cds; mitochondrial Length = 410 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 aaatatgaacttctaaatagatta 129 ||||||||||||||||||| |||| Sbjct: 289 aaatatgaacttctaaataaatta 266
>emb|AL121900.26|HSBA379J5 Human DNA sequence from clone RP11-379J5 on chromosome 20 Contains the 3' end of the SEC23B gene for Sec23 (S. cerevisiae) homolog B, two novel genes, the 5' end of the HARS2 gene for histidyl-tRNA synthetase 2, a pseudogene similar to part of homeobox proteins and two CpG islands, complete sequence Length = 149933 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 agcaagcacttattgtctat 58 |||||||||||||||||||| Sbjct: 97099 agcaagcacttattgtctat 97118
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 acctatcaagcttaatctta 410 |||||||||||||||||||| Sbjct: 577638 acctatcaagcttaatctta 577657
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 tttctcagccatttcctttt 309 |||||||||||||||||||| Sbjct: 590340 tttctcagccatttcctttt 590359
>gb|AC118273.4| Homo sapiens chromosome 11, clone RP11-107P7, complete sequence Length = 187529 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 attcattttctttctcagcc 299 |||||||||||||||||||| Sbjct: 122575 attcattttctttctcagcc 122556
>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence Length = 139773 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 taaatttcttgctctcttca 350 |||||||||||||||||||| Sbjct: 56560 taaatttcttgctctcttca 56541
>emb|BX571868.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 10/17 Length = 345829 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 ccgcaggattgcagcaaaaa 239 |||||||||||||||||||| Sbjct: 279698 ccgcaggattgcagcaaaaa 279717
>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete sequence Length = 162642 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tttttacagtacaacaccag 32 |||||||||||||||||||| Sbjct: 71371 tttttacagtacaacaccag 71390
>emb|CR857271.1| Pongo pygmaeus mRNA; cDNA DKFZp469P1321 (from clone DKFZp469P1321) Length = 3269 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 aacatgaagtaaagaaaagt 192 |||||||||||||||||||| Sbjct: 3039 aacatgaagtaaagaaaagt 3020
>gb|AC117746.6| Homo sapiens chromosome 11, clone RP11-159C12, complete sequence Length = 157527 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 attcattttctttctcagcc 299 |||||||||||||||||||| Sbjct: 44340 attcattttctttctcagcc 44359
>gb|AC182841.2| Pan troglodytes BAC clone CH251-667I24 from chromosome 11, complete sequence Length = 189657 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 attcattttctttctcagcc 299 |||||||||||||||||||| Sbjct: 115627 attcattttctttctcagcc 115646
>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 84780 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctttaaatttcttgctctct 347 |||||||||||||||||||| Sbjct: 44624 ctttaaatttcttgctctct 44605
>gb|AY320019.1| Brevipalpus phoenicis isolate Brevph17 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 374 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 aaatatgaacttctaaatagatta 129 ||||||||||||||||||| |||| Sbjct: 305 aaatatgaacttctaaataaatta 282
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 caccagcttagaagcaagca 46 |||||||||||||||||||| Sbjct: 2058806 caccagcttagaagcaagca 2058825
>gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, complete sequence Length = 177325 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ttctttctcagccatttcct 306 |||||||||||||||||||| Sbjct: 3115 ttctttctcagccatttcct 3134
>gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, complete sequence Length = 179219 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ttctttctcagccatttcct 306 |||||||||||||||||||| Sbjct: 178539 ttctttctcagccatttcct 178558
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 caccagcttagaagcaagca 46 |||||||||||||||||||| Sbjct: 79668 caccagcttagaagcaagca 79687
>gb|AC129531.8| Homo sapiens chromosome 17, clone RP11-188B1, complete sequence Length = 164068 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ttctttctcagccatttcct 306 |||||||||||||||||||| Sbjct: 129057 ttctttctcagccatttcct 129076
>emb|AL136297.3|CNS01DW1 Human chromosome 14 DNA sequence BAC R-60K23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163918 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ttctttctcagccatttcct 306 |||||||||||||||||||| Sbjct: 46323 ttctttctcagccatttcct 46342
>gb|AF007544.1|AF007544 Homo sapiens prostate-specific membrane antigen (PSM) gene, complete cds Length = 93525 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 attcattttctttctcagcc 299 |||||||||||||||||||| Sbjct: 62405 attcattttctttctcagcc 62424
>dbj|AP003122.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-313I2, complete sequence Length = 137888 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 attcattttctttctcagcc 299 |||||||||||||||||||| Sbjct: 48447 attcattttctttctcagcc 48466
>gb|AC116720.16| Mus musculus chromosome 3, clone RP23-223N19, complete sequence Length = 203748 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 attttctttctcagccattt 303 |||||||||||||||||||| Sbjct: 54894 attttctttctcagccattt 54875
>gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome 12, complete sequence Length = 199237 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 atgatggaaatggactaacc 80 |||||||||||||||||||| Sbjct: 154305 atgatggaaatggactaacc 154286
>emb|CR394550.5| Zebrafish DNA sequence from clone CH211-231O11 in linkage group 10, complete sequence Length = 170825 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 atctcagcacacataggatg 499 |||||||||||||||||||| Sbjct: 94528 atctcagcacacataggatg 94509
>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 137883 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ttctttctcagccatttcct 306 |||||||||||||||||||| Sbjct: 36082 ttctttctcagccatttcct 36063
>gb|M90639.1|CRECPCABPA Chlamydomonas eugametos chlorophyll a-binding protein (psbC) gene, complete cds Length = 3230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 ctcagctgtaatcttataac 155 |||||||||||||||||||| Sbjct: 794 ctcagctgtaatcttataac 813 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,365,013 Number of Sequences: 3902068 Number of extensions: 6365013 Number of successful extensions: 174263 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 173969 Number of HSP's gapped (non-prelim): 294 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
