ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ODPB_MYCPN (P75391) Pyruvate dehydrogenase E1 component subunit ... 31 2.1
2TNR8_RAT (P97525) Tumor necrosis factor receptor superfamily mem... 30 2.7
3HXK1_BOVIN (P27595) Hexokinase-1 (EC 2.7.1.1) (Hexokinase type I... 30 2.7
4PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin) 29 6.0
5HXK1_HUMAN (P19367) Hexokinase-1 (EC 2.7.1.1) (Hexokinase type I... 29 7.8
6ARSF_HUMAN (P54793) Arylsulfatase F precursor (EC 3.1.6.-) (ASF) 29 7.8
7DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire) 29 7.8

>ODPB_MYCPN (P75391) Pyruvate dehydrogenase E1 component subunit beta (EC|
           1.2.4.1)
          Length = 327

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 479 PLANARWGNYAFSAAFGGLFPMLSFQMHGFPDPAAY 372
           P+A A        AA GGL P++  Q  GF  PA +
Sbjct: 60  PIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMF 95



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>TNR8_RAT (P97525) Tumor necrosis factor receptor superfamily member 8|
           precursor (CD30L receptor) (Lymphocyte activation
           antigen CD30)
          Length = 493

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 38  QRSQNLDHPNLDRYRNSMDTPYIQTEIQTEQNLYQTPPQFDDSISSNRFTPRGGLQSREP 217
           QRS ++   +     + +  P ++T         +T P  DDSI+ N F PR   +  EP
Sbjct: 345 QRSGSVTDSSAGHTLSPLSPPAVETGASVGTACLETLPLLDDSITGNSFAPR---EPPEP 401

Query: 218 R 220
           R
Sbjct: 402 R 402



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>HXK1_BOVIN (P27595) Hexokinase-1 (EC 2.7.1.1) (Hexokinase type I) (HK I)|
           (Brain form hexokinase)
          Length = 918

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +2

Query: 68  LDRYRNSMDTPYIQTEIQTEQNLYQTPPQF 157
           L+R R++  TP ++T ++ + +LY+T PQ+
Sbjct: 394 LNRLRDNKSTPRLRTTVRVDGSLYKTHPQY 423



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>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)|
          Length = 3336

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 475  WRMHGGATMRSRPHSGACSPCSASKCMGFQIQPHMPSRLG 356
            W +    ++   PHSGA S CSA   +G +    +P   G
Sbjct: 2234 WTLEPWPSLPVTPHSGALSLCSADTSLGDRADTSLPQTQG 2273



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>HXK1_HUMAN (P19367) Hexokinase-1 (EC 2.7.1.1) (Hexokinase type I) (HK I)|
           (Brain form hexokinase)
          Length = 917

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 68  LDRYRNSMDTPYIQTEIQTEQNLYQTPPQF 157
           L+R R++  TP ++T +  + +LY+T PQ+
Sbjct: 394 LNRLRDNKGTPRLRTTVGVDGSLYKTHPQY 423



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>ARSF_HUMAN (P54793) Arylsulfatase F precursor (EC 3.1.6.-) (ASF)|
          Length = 590

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 481 SRWRMHGGATMRSRPHSGACSPCSASKCMGFQIQPHMPSRL 359
           S W+ H    +   P SG C   S  +C G Q+  H P  L
Sbjct: 466 SVWKAHYVTPVFQPPASGGCYVTSLCRCFGEQVTYHNPPLL 506



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>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)|
          Length = 877

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 17  VHTVLSNQRSQNLDHPNLDRYRNSMDTPYIQTEI--QTEQNLYQTPPQFDDSISSNRFT 187
           +H  L+ +R   L HP+     + + TPY+Q  +  Q   ++  T P   D +     T
Sbjct: 243 IHQALAAERKFFLSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLT 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,569,450
Number of Sequences: 219361
Number of extensions: 1444721
Number of successful extensions: 3731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3707
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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