ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25g12 |
|---|---|
| Clone Library Name | barley_pub |
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 32.0 bits (71), Expect = 1.1 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%) Frame = +2 Query: 257 NSTILPLPGIWSSSPGERR-------MKSTSPMNTGAQSAMPAPLAASGTGLAR*LTSAP 415 +S+ P PG S+SP ERR ++ +SP++ P P +G G A TSAP Sbjct: 816 SSSSCPSPGDRSASPPERRHMQQQPHLQRSSPLH---YYMYPPPPQVNGNGSAGSPTSAP 872 Query: 416 PT 421 PT Sbjct: 873 PT 874
>PCX1_MOUSE (Q9QYC1) Pecanex-like protein 1 (Pecanex homolog) (Fragment)| Length = 1460 Score = 30.4 bits (67), Expect = 3.2 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +2 Query: 290 SSSPGERRMKSTSPMNTGAQSAMPAPLAASGTGLAR*LTSAPPTVAAGSFTCSV 451 +S PG + ++ P N +Q + P +G+GL TS PPT+ SV Sbjct: 1175 TSCPGNSAVTASDPHNNVSQGSTGHPGQGAGSGLHPPTTSYPPTLGTSHSAHSV 1228
>PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog)| Length = 2341 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = +2 Query: 290 SSSPGERRMKSTSPMNTGAQSAMPAPLAASGTGLAR*LTSAPPTVAAGSFTCSVIVGPV 466 +S G + +P + Q ++ P SGTGL +TS PPT+ + SV G V Sbjct: 2056 TSCTGNNATTANNPHSNVTQGSIGNPGQGSGTGLHPPVTSYPPTLGTSHSSHSVQSGLV 2114
>ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodomain protein 1)| Length = 1054 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +1 Query: 289 EQQPRREEDEEHQPDEHRRPVRHAGPLSCLR 381 EQ+P +E P E PV HA L C R Sbjct: 602 EQEPLNVAEERQTPVEEHAPVEHAADLRCSR 632
>SYUA_MACMU (P61143) Alpha-synuclein| Length = 140 Score = 29.6 bits (65), Expect = 5.4 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A FI Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFI 95
>SYUA_MACFA (P61142) Alpha-synuclein| Length = 140 Score = 29.6 bits (65), Expect = 5.4 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A FI Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFI 95
>NFYA_RAT (P18576) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) (CCAAT-binding transcription factor subunit B) (CBF-B) Length = 341 Score = 29.6 bits (65), Expect = 5.4 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = -1 Query: 471 VHTGPTITEQ--VKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFIGLVLFILLSPG 298 V+ TI +Q + PAA++ GA++ Q + + G G V + + ++ S G Sbjct: 173 VNADGTILQQGMITIPAASLAGAQIVQTGANTNTTSSGQGT---VTVTLPVAGNVVNSGG 229 Query: 297 LLLQIPGKGRMVEFGNFQTSGISILVHAVIY 205 +++ +PG G + G +L +Y Sbjct: 230 MVMMVPGAGSVPAIQRIPLPGAEMLEEEPLY 260
>NFYA_BOVIN (Q5E9S2) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) Length = 341 Score = 29.6 bits (65), Expect = 5.4 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = -1 Query: 471 VHTGPTITEQ--VKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFIGLVLFILLSPG 298 V+ TI +Q + PAA++ GA++ Q + + G G V + + ++ S G Sbjct: 173 VNADGTILQQGMITIPAASLAGAQIVQTGANTNTTSSGQGT---VTVTLPVAGNVVNSGG 229 Query: 297 LLLQIPGKGRMVEFGNFQTSGISILVHAVIY 205 +++ +PG G + G +L +Y Sbjct: 230 MVMMVPGAGSVPAIQRIPLPGAEMLEEEPLY 260
>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister| chromatids) Length = 1741 Score = 29.6 bits (65), Expect = 5.4 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +1 Query: 268 PALAGDLEQQPRREEDEEHQPDEHRRPVRHAGPLSCLRHRARSLIDLCPP 417 P L G+ + +P EED++ QP +R R G +A + +D+ PP Sbjct: 683 PRLNGNTDPEPTEEEDQQQQP---KRATRGRG------RKANNNVDVTPP 723
>MDTK_PHOLL (Q7N3V2) Multidrug resistance protein mdtK (Multidrug-efflux| transporter) Length = 457 Score = 29.3 bits (64), Expect = 7.1 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -1 Query: 459 PTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI-GLVLFILLSPGLLLQI 283 P I Q + A V + S +A G + W PV + G L + L+P ++ Q+ Sbjct: 17 PVIIAQFSQTAMGVVDTVMAGSVSATDMSAVAVGTSIWLPVILFGYGLLLALTP-IIAQM 75 Query: 282 PGKGR------MVEFGNFQTSGISILVHAVIY 205 G GR + G + +SI++ A++Y Sbjct: 76 NGSGRRNLIASQTQQGFWLAIFLSIIIIAILY 107
>HR38_DROME (P49869) Probable nuclear hormone receptor HR38 (dHR38)| Length = 1073 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 9/45 (20%) Frame = +1 Query: 268 PALAGDLEQQPRREEDEEHQPDEHRRPVRH---------AGPLSC 375 PA+A +QQ ++++ ++ Q +H++ +H GPLSC Sbjct: 434 PAIALHAQQQQQQQQQQQQQQQQHQQQQQHLQLQLISPIGGPLSC 478
>SYUA_PONPA (P61146) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFV 95
>SYUA_PANTR (P61145) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFV 95
>SYUA_PANPA (P61144) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFV 95
>SYUA_LAGLA (P61141) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE +VGGA V + + +GAG A F+ Sbjct: 49 VHGVTTVAEKTKEQVTSVGGAVVTGVTAVAQKTVEGAGNIAAATGFV 95
>SYUA_HUMAN (P37840) Alpha-synuclein (Non-A beta component of AD amyloid)| (Non-A4 component of amyloid precursor) (NACP) Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFV 95
>SYUA_GORGO (P61140) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFV 95
>SYUA_ERYPA (P61139) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFV 95
>SYUA_ATEGE (P61138) Alpha-synuclein| Length = 140 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE +VGGA V + + +GAG A F+ Sbjct: 49 VHGVTTVAEKTKEQVTSVGGAVVTGVTAVAQKTVEGAGNIAAATGFV 95
>APS_RAT (Q9Z200) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 621 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/58 (27%), Positives = 24/58 (41%) Frame = +2 Query: 260 STILPLPGIWSSSPGERRMKSTSPMNTGAQSAMPAPLAASGTGLAR*LTSAPPTVAAG 433 +T P+P W+ G+ S + S A+S +G + TS PP A G Sbjct: 521 NTAAPVPACWTEPAGQHYFSSLATATCPPTSPSNGAGASSSSGSSSSATSVPPRPAEG 578
>KE4_PONPY (Q5RFD5) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 29.3 bits (64), Expect = 7.1 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = -3 Query: 523 YTQSHSHATFMSSHSFHSPHRSYNHRAGEGTSCNRRGGRGQSAS 392 + HSH HS H S HR + + RGG G+S + Sbjct: 79 HDHGHSHGDLHHGHSHGHSHESLYHRGHGHDNEHSRGGYGESGA 122
>SYUA_SERCA (Q91448) Alpha-synuclein (Synelfin)| Length = 143 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAG 358 VH T+ E+ KE + VGGA V + + +GAG Sbjct: 49 VHGVTTVAEKTKEQVSNVGGAVVTGVTAVAQKTVEGAG 86
>NFYA_HUMAN (P23511) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) Length = 347 Score = 28.9 bits (63), Expect = 9.2 Identities = 17/83 (20%), Positives = 37/83 (44%) Frame = -1 Query: 453 ITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFIGLVLFILLSPGLLLQIPGK 274 ++ + PAA++ GA++ Q + + G G V + + ++ S G+++ +PG Sbjct: 187 VSGMITIPAASLAGAQIVQTGANTNTTSSGQGT---VTVTLPVAGNVVNSGGMVMMVPGA 243 Query: 273 GRMVEFGNFQTSGISILVHAVIY 205 G + G +L +Y Sbjct: 244 GSVPAIQRIPLPGAEMLEEEPLY 266
>ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11 (Ankyrin| repeat-containing cofactor 1) Length = 2664 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 241 GLEVAELHHPALAGDLEQQPRREEDEEHQPDEHR 342 GLE E HHPA + + P +E E+ +P+ ++ Sbjct: 997 GLEPWERHHPAREKEKKDGPDKERKEKTKPERYK 1030
>APS_MOUSE (Q9JID9) SH2 and PH domain-containing adapter protein APS (Adapter| protein with pleckstrin homology and Src homology 2 domains) Length = 621 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/58 (27%), Positives = 24/58 (41%) Frame = +2 Query: 260 STILPLPGIWSSSPGERRMKSTSPMNTGAQSAMPAPLAASGTGLAR*LTSAPPTVAAG 433 +T P+P W+ G+ S + S A+S +G + TS PP A G Sbjct: 521 NTAAPVPACWTEPAGQHYFSSLATATCPPASPSNGAGASSSSGSSSSATSLPPRPAEG 578
>TATB_HAEIN (P57047) Sec-independent protein translocase protein tatB homolog| Length = 186 Score = 28.9 bits (63), Expect = 9.2 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -1 Query: 462 GPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAP 340 G T+ +Q+KE + AE +Q A V EAA+ A+ P Sbjct: 104 GTTVEDQIKEIKSAAENAEKSQNAISVEEAAETLSEAERTP 144
>SYUA_SAGLB (P61147) Alpha-synuclein| Length = 140 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFV 95
>SYUA_RAT (P37377) Alpha-synuclein| Length = 140 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFV 95
>SYUA_MOUSE (O55042) Alpha-synuclein (Non-A beta component of AD amyloid)| (Non-A4 component of amyloid precursor) (NACP) Length = 140 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -1 Query: 471 VHTGPTITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFI 331 VH T+ E+ KE VGGA V + + +GAG A F+ Sbjct: 49 VHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFV 95
>CRYD_NEUCR (Q7SI68) Putative crytochrome DASH, mitochondrial precursor| Length = 745 Score = 28.9 bits (63), Expect = 9.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -3 Query: 517 QSHSHATFMSSHSFHSPHRSYNHRAGEGTSCNRRGGRG 404 +SHSH + ++H HR ++ G G RGGRG Sbjct: 650 RSHSHQH--NQQNYHHSHRGNDYTRGGGGGRGGRGGRG 685
>NFYA_MOUSE (P23708) Nuclear transcription factor Y subunit alpha (Nuclear| transcription factor Y subunit A) (NF-YA) (CAAT-box DNA-binding protein subunit A) Length = 346 Score = 28.9 bits (63), Expect = 9.2 Identities = 17/83 (20%), Positives = 37/83 (44%) Frame = -1 Query: 453 ITEQVKEPAATVGGAEVNQRASPVPEAAKGAGMADWAPVFIGLVLFILLSPGLLLQIPGK 274 ++ + PAA++ GA++ Q + + G G V + + ++ S G+++ +PG Sbjct: 186 VSGMITIPAASLAGAQIVQTGANTNTTSSGQGT---VTVTLPVAGNVVNSGGMVMMVPGA 242 Query: 273 GRMVEFGNFQTSGISILVHAVIY 205 G + G +L +Y Sbjct: 243 GSVPAIQRIPLPGAEMLEEEPLY 265
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 28.9 bits (63), Expect = 9.2 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +2 Query: 341 GAQSAMPAPLAASGTGLAR*LTSAPPTVAAGS 436 G A PAP + GTG T+APPT A S Sbjct: 1232 GGTPAPPAPPSGPGTGAGAPPTAAPPTGGASS 1263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,549,613 Number of Sequences: 219361 Number of extensions: 1138555 Number of successful extensions: 4756 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4743 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
