ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25e14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 44 2e-04
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 42 6e-04
3HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 36 0.042
4PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV) 35 0.072
5UUP_ECOLI (P43672) ABC transporter ATP-binding protein uup 28 8.8

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 422 DVYDYFQDIIDRPYMHGFNNSHAPCCTLGKVRXXXX-XXXXXXXCKDRSKYVXWDEYHPT 246
           D+Y  F  +++ P  +GF     PCC +G  +              + S Y+ WD  HP+
Sbjct: 371 DIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTLKNMSNASSYLFWDGLHPS 430

Query: 245 DRANELIALETLKR 204
            RA E+   + +K+
Sbjct: 431 QRAYEISNRKLVKK 444



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 422 DVYDYFQDIIDRPYMHGFNNSHAPCCTLGKVRXXXX-XXXXXXXCKDRSKYVXWDEYHPT 246
           D+Y     +++ P  +GF  +  PCC  G +             C + S Y+ WD  HPT
Sbjct: 454 DIYTIISQMLETPAAYGFEETKKPCCKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPT 513

Query: 245 DRANELI 225
            RA + I
Sbjct: 514 QRAYKTI 520



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
 Frame = -1

Query: 422 DVYDYFQDIIDRPYMHGFNNSHAPCCTLGKVRXXXXXXXXXXXCK----DRSKYVXWDEY 255
           D +  F+ +   P  HGF N+  PC  + +              +       K+V WD  
Sbjct: 333 DTHALFETLTSAPEEHGFVNASDPCLDINRSSSVDYMYTHALRSECAASGAEKFVFWDVT 392

Query: 254 HPTDRANELIALETLKRLN 198
           HPT   +  +A + L+  N
Sbjct: 393 HPTTATHRYVAEKMLESSN 411



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>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 35.0 bits (79), Expect = 0.072
 Identities = 23/90 (25%), Positives = 30/90 (33%)
 Frame = -3

Query: 399 HHRPALHARLQQLPRAMLHARQGEADAHLHPAFHAXXXXXXXXXXXXXXXXXXXXRAHRA 220
           H +PA HA  QQ  +   H  Q +   H  PA H                         A
Sbjct: 335 HAKPAQHAAQQQHAKPAQHVAQQQQQQHAKPAAHTAAKPVQHNAQQQHAKPA-------A 387

Query: 219 RDAQAPQHHSRCQQHLQLACHGRRSSKCIR 130
             A  P  H+  QQH + A H + +    R
Sbjct: 388 HTAAKPVQHNAAQQHAKPAAHAKPAVNAAR 417



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>UUP_ECOLI (P43672) ABC transporter ATP-binding protein uup|
          Length = 635

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 NDCDVEALERLERDELVGPVRGVVLIPXH 272
           ND DVE LE LE  EL+   +G VL+  H
Sbjct: 469 NDLDVETLELLE--ELIDSYQGTVLLVSH 495


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,015,776
Number of Sequences: 219361
Number of extensions: 798899
Number of successful extensions: 1909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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