ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25e04 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 72.4 bits (176), Expect(2) = 2e-21 Identities = 35/51 (68%), Positives = 37/51 (72%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIY EEW+ +GD YAGGTTGLLIWAVT LVYNTSALA Sbjct: 89 DGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139 Score = 47.8 bits (112), Expect(2) = 2e-21 Identities = 23/34 (67%), Positives = 27/34 (79%) Frame = -3 Query: 405 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGRLQ 304 LPSLSR +SF V SG KKIKVDKPLG+GG ++ Sbjct: 27 LPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 69.7 bits (169), Expect(2) = 2e-19 Identities = 34/51 (66%), Positives = 35/51 (68%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIY +EWS SGD Y GGTTGL IWAVT LVYNTSALA Sbjct: 87 DGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALA 137 Score = 43.5 bits (101), Expect(2) = 2e-19 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -3 Query: 405 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGRL 307 LPSL+R SSF VV SG KK+K DKP G+ G + Sbjct: 25 LPSLARSSSSFKVVASGVKKLKTDKPYGINGSM 57
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 69.7 bits (169), Expect(2) = 2e-19 Identities = 34/51 (66%), Positives = 35/51 (68%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIY +EWS SGD Y GGTTGL IWAVT LVYNTSALA Sbjct: 87 DGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137 Score = 43.5 bits (101), Expect(2) = 2e-19 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -3 Query: 405 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGRL 307 LPSL+R SSF VV SG KK+K DKP G+ G + Sbjct: 25 LPSLTRSSSSFKVVASGVKKLKTDKPYGINGSM 57
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 67.0 bits (162), Expect(2) = 5e-18 Identities = 33/51 (64%), Positives = 33/51 (64%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIY EWS SGD Y GG TGL IWAVT LVYNTSALA Sbjct: 89 DGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 139 Score = 41.6 bits (96), Expect(2) = 5e-18 Identities = 19/33 (57%), Positives = 23/33 (69%) Frame = -3 Query: 405 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGRL 307 LPSL+R SF +V SG KKIK DKP G+ G + Sbjct: 27 LPSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 67.0 bits (162), Expect(2) = 6e-18 Identities = 32/51 (62%), Positives = 35/51 (68%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIY ++WS SGD Y GGTTGL IWAVT LV+NTSALA Sbjct: 85 DGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135 Score = 41.2 bits (95), Expect(2) = 6e-18 Identities = 19/33 (57%), Positives = 23/33 (69%) Frame = -3 Query: 405 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGRL 307 LPSL+R SSF V SG KK+K DKP G+ G + Sbjct: 23 LPSLARSSSSFRVQASGVKKLKTDKPYGINGSM 55
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 67.8 bits (164), Expect(2) = 1e-17 Identities = 33/51 (64%), Positives = 34/51 (66%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIY +EWS SGD Y GG TGL IWAVT LVYNTSALA Sbjct: 90 DGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140 Score = 39.3 bits (90), Expect(2) = 1e-17 Identities = 20/34 (58%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -3 Query: 405 LPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGRL 307 LPSL+R SSF +V SG KKIK DKP G+ G + Sbjct: 27 LPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 71.2 bits (173), Expect(2) = 3e-13 Identities = 34/51 (66%), Positives = 36/51 (70%) Frame = -1 Query: 314 DGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 162 DGYSPIYTPEEWS SGD Y GG TGL +WAVT LVY+TSALA Sbjct: 87 DGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137 Score = 21.2 bits (43), Expect(2) = 3e-13 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = -3 Query: 378 SFAVVCSGGKKIKVDKPLGLGG 313 S +V KK++ +P G GG Sbjct: 34 SLVIVAKKAKKVQTAQPYGPGG 55
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/24 (75%), Positives = 20/24 (83%) Frame = -3 Query: 360 SGGKKIKVDKPLGLGGRLQPNLHA 289 SGGKKIKVDKPLGLGG L ++ A Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>MANA_ECHMU (Q9GP38) Probable mannose-6-phosphate isomerase (EC 5.3.1.8)| (Phosphomannose isomerase) (PMI) (Phosphohexomutase) Length = 433 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 296 RLGCSRP-PSPRGLSTLIFLPPLQTTAKEEPRRERDGR 406 RLG ++P P+P G+S F+PP+ A + + + + R Sbjct: 323 RLGATQPIPTPEGISMKSFIPPVSEFAVDVIQFDAESR 360
>SPT6H_BRARE (Q8UVK2) Transcription elongation factor SPT6 (Protein pandora)| Length = 1726 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 320 SGDGYSPIYTPEEWSESGDRYAGGTT 243 +G G +P TP +W+ S Y+GG++ Sbjct: 1561 TGQGQNPNTTPAQWASSQYGYSGGSS 1586
>PDLI7_HUMAN (Q9NR12) PDZ and LIM domain protein 7 (LIM mineralization protein)| (LMP) (Protein enigma) Length = 457 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -2 Query: 334 QAPRTRGTATAQSTRQRNGPNLVTATPVERP 242 Q PRT A A ST Q P +P RP Sbjct: 192 QVPRTEAPAPASSTPQEPWPGPTAPSPTSRP 222
>VGNM_CPSMV (P31630) Genome polyprotein M (RNA2 polyprotein) [Contains:| Movement protein (MP); Large coat protein (LCP) (Coat protein VP37); Small coat protein (SCP) (Coat protein VP23)] Length = 1002 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -3 Query: 408 SLPSLSRRGSSFAVVCSGGKKIKVDKP 328 S ++ +GSSF + SG K+ K+DKP Sbjct: 381 STKAIFSKGSSFRYMISGKKEHKIDKP 407
>TRA6_BACST (Q45618) Putative transposase for insertion sequence element IS5376| Length = 400 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +3 Query: 84 DIHAHYSYVDYRVETRPVLQVDAFLAGES 170 ++ A S V V+TRP+ DAFL GES Sbjct: 371 EMAATISPVSVEVDTRPLSVYDAFLRGES 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,435,073 Number of Sequences: 219361 Number of extensions: 680699 Number of successful extensions: 2107 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2107 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
