ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24n16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 317 bits (160), Expect = 6e-84 Identities = 164/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 117010 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 117069 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117070 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 117129 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117130 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 117175 Score = 317 bits (160), Expect = 6e-84 Identities = 164/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 97884 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 97825 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97824 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 97765 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97764 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 97719
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 474065 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 474124 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474125 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 474184 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 474185 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 474230
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 469931 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 469872 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469871 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 469812 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 469811 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 469766
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 183583 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 183642 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183643 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 183702 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 183703 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 183748
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 500088 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 500147 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500148 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 500207 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 500208 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 500253
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 41834 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 41893 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41894 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 41953 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 41954 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 41999 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 23283 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 23224 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23223 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 23164 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 23163 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 23118
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 120674 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 120733 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120734 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120793 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 120794 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 120839 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 102163 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 102104 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102103 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 102044 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 102043 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 101998
>gb|L41591.1|BAMCPITSA Bambusa multiplex chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 483 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 198 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 139 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 79 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 78 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 33
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 121391 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 121450 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121451 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 121510 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 121511 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 121556 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 102840 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 102781 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102780 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 102721 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 102720 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 102675
>gb|M36716.1|MZEMTCPAA Maize mitochondrion with chloroplast insert containing rRNAs Length = 1986 Score = 309 bits (156), Expect = 1e-81 Identities = 163/166 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1150 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 1091 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1090 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 1031 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1030 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 985
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 116875 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 116934 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 116935 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 116994 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 116995 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 117040 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 98281 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 98222 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 98221 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 98162 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 98161 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 98116
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 116875 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 116934 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 116935 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 116994 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 116995 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 117040 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 98281 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 98222 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 98221 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 98162 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 98161 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 98116
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 116824 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 116883 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 116884 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 116943 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 116944 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 116989 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 98226 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 98167 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 98166 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 98107 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 98106 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 98061
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 31511991 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 31511932 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 31511931 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 31511872 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 31511871 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 31511826 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 31510859 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 31510800 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 31510799 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 31510740 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 31510739 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 31510694 Score = 240 bits (121), Expect = 1e-60 Identities = 128/131 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 13872893 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 13872952 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 13872953 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 13873012 Query: 121 gagaacccgtc 131 ||||||||||| Sbjct: 13873013 gagaacccgtc 13873023 Score = 97.6 bits (49), Expect = 1e-17 Identities = 105/124 (84%) Strand = Plus / Plus Query: 43 gacacctatttaaacggctcgtctngccgctaccttatcctatttccatacttctgtcgc 102 |||||||||| |||||| |||||| ||||| |||||||||||||||||||| |||| Sbjct: 17385038 gacacctattcaaacggttcgtctcattactaccgtatcctatttccatacttctatcgc 17385097 Query: 103 tccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctag 162 |||||||| ||| | ||| |||||| || |||||||||||||| ||| |||||||||| Sbjct: 17385098 tccatcccggtaagagtgaagaacctgttactgtctcggctgtgctactagaggctctag 17385157 Query: 163 ggaa 166 |||| Sbjct: 17385158 ggaa 17385161
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 81737 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 81796 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 81797 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 81856 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 81857 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 81902 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 80605 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 80664 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 80665 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 80724 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 80725 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 80770
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 120618 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 120677 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 120678 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtgtgggtg 120737 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 120738 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 120783 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 102119 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 102060 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 102059 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtgtgggtg 102000 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 101999 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 101954
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 116848 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 116907 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 116908 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 116967 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 116968 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 117013 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 98270 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 98211 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 98210 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 98151 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 98150 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 98105
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 125322 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 125263 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 125262 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 125203 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 125202 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 125157 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 17048 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 16989 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 16988 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 16929 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 16928 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 16883
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 143856 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 143797 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 143796 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 143737 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 143736 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 143691
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 96452 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 96393 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 96392 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 96333 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 96332 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 96287
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 30516 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 30457 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 30456 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 30397 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 30396 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 30351
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 9271208 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 9271149 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9271148 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 9271089 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9271088 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 9271043 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 9230708 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 9230649 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9230648 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 9230589 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9230588 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 9230543 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 9167296 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 9167237 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9167236 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 9167177 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9167176 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 9167131 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 9059122 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 9059063 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9059062 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 9059003 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9059002 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 9058957
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 19941196 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 19941137 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 19941136 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 19941077 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 19941076 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 19941031 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 10390060 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 10390001 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 10390000 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 10389941 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10389940 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 10389895 Score = 54.0 bits (27), Expect = 1e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatc 27 ||||||||||||||||||||||||||| Sbjct: 14020441 cgttaggatgcctcagctgcatacatc 14020415
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 9239073 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 9239132 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 9239133 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 9239192 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 9239193 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 9239238
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 31602507 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 31602448 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 31602447 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 31602388 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 31602387 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 31602342 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 31601375 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 31601316 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 31601315 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 31601256 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 31601255 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 31601210 Score = 240 bits (121), Expect = 1e-60 Identities = 128/131 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 13867868 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 13867927 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 13867928 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 13867987 Query: 121 gagaacccgtc 131 ||||||||||| Sbjct: 13867988 gagaacccgtc 13867998 Score = 97.6 bits (49), Expect = 1e-17 Identities = 105/124 (84%) Strand = Plus / Plus Query: 43 gacacctatttaaacggctcgtctngccgctaccttatcctatttccatacttctgtcgc 102 |||||||||| |||||| |||||| ||||| |||||||||||||||||||| |||| Sbjct: 17378579 gacacctattcaaacggttcgtctcattactaccgtatcctatttccatacttctatcgc 17378638 Query: 103 tccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctag 162 |||||||| ||| | ||| |||||| || |||||||||||||| ||| |||||||||| Sbjct: 17378639 tccatcccggtaagagtgaagaacctgttactgtctcggctgtgctactagaggctctag 17378698 Query: 163 ggaa 166 |||| Sbjct: 17378699 ggaa 17378702
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 33581721 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 33581662 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 33581661 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 33581602 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 33581601 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 33581556
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 44847 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 44906 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 44907 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 44966 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 44967 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 45012
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 126918 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 126859 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 126858 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 126799 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 126798 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 126753
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 50286 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 50345 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 50346 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 50405 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 50406 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 50451
>emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon Length = 8862 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 8472 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 8413 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8412 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtgtgggtg 8353 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 8352 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 8307
>dbj|AK119524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E06, full insert sequence Length = 1809 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1714 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 1655 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1654 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 1595 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1594 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 1549
>dbj|AK105766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E02, full insert sequence Length = 2146 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2130 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 2071 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2070 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 2011 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2010 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 1965
>dbj|AK060583.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H06, full insert sequence Length = 1094 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 391 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 332 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 331 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 272 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 271 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 226
>dbj|AK060139.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F01, full insert sequence Length = 1147 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 562 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 503 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 502 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 443 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 442 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 397
>dbj|AK059370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E12, full insert sequence Length = 1741 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 936 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 877 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 876 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 817 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 816 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 771
>dbj|AK059311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G08, full insert sequence Length = 2105 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 947 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 888 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 887 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 828 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 827 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 782
>dbj|AK059158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D02, full insert sequence Length = 1502 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 800 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 741 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 740 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 681 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 680 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 635
>gb|L41587.1|PPTCPITSA Poa pratensis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 485 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 200 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 141 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 140 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccatatgggtg 81 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 80 gagaacccgtcgctgtctcggttgtgataccggaggctctagggaa 35
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 19952472 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 19952413 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 19952412 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 19952353 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 19952352 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 19952307 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 10396099 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 10396040 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 10396039 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 10395980 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 10395979 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 10395934 Score = 54.0 bits (27), Expect = 1e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatc 27 ||||||||||||||||||||||||||| Sbjct: 14028683 cgttaggatgcctcagctgcatacatc 14028657
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 116818 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 116877 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 116878 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 116937 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 116938 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 116983 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 98221 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 98162 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 98161 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 98102 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 98101 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 98056
>gb|L29442.1|PPTCP Poa pratensis chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 506 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 231 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 172 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 171 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccatatgggtg 112 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 111 gagaacccgtcgctgtctcggttgtgataccggaggctctagggaa 66
>emb|X01365.1|CHZM23S Maize chloroplast DNA for 4.5S and 23S ribosomal RNA Length = 3079 Score = 301 bits (152), Expect = 3e-79 Identities = 162/166 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3060 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 3001 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3000 tcgtctcgccgctaccttatcctatttccatacttctgtcgctccatccccgtgtgggtg 2941 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2940 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 2895
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 293 bits (148), Expect = 8e-77 Identities = 161/166 (96%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 5632779 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 5632838 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 5632839 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 5632898 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 5632899 gagaacccgtcgctgtctcggctgtgctactggaggctctagggaa 5632944
>dbj|AK061169.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B02, full insert sequence Length = 1006 Score = 293 bits (148), Expect = 8e-77 Identities = 161/166 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 990 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 931 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 930 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 871 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 870 gagaacccgtcgctgtctcggctatgctaccggaggctctagggaa 825
>dbj|AK060185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-C09, full insert sequence Length = 886 Score = 293 bits (148), Expect = 8e-77 Identities = 161/166 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 791 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaccggc 732 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 731 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 672 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 671 gagaacccgtcgctgtctcggctgtgctaccggaggctctagggaa 626
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 293 bits (148), Expect = 8e-77 Identities = 161/166 (96%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 5632768 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 5632827 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 5632828 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 5632887 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 5632888 gagaacccgtcgctgtctcggctgtgctactggaggctctagggaa 5632933
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 293 bits (148), Expect = 8e-77 Identities = 161/166 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 20106 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 20047 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 20046 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 19987 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 19986 gagaacccgtcgctgtctcggctgtgctactggaggctctagggaa 19941
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 285 bits (144), Expect = 2e-74 Identities = 160/166 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 815843 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 815784 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 815783 tcatctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 815724 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 815723 gagaacccgtcgctgtctcggctatgctaccggaggctctagggaa 815678 Score = 133 bits (67), Expect = 2e-28 Identities = 70/71 (98%) Strand = Plus / Minus Query: 93 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 19435594 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 19435535 Query: 153 gaggctctagg 163 ||||||||||| Sbjct: 19435534 gaggctctagg 19435524
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 285 bits (144), Expect = 2e-74 Identities = 160/166 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 25051 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 24992 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 24991 tcatctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 24932 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 24931 gagaacccgtcgctgtctcggctatgctaccggaggctctagggaa 24886
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 285 bits (144), Expect = 2e-74 Identities = 160/166 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 93974 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 93915 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 93914 tcatctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 93855 Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 93854 gagaacccgtcgctgtctcggctatgctaccggaggctctagggaa 93809
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12, from chromosome 3, complete sequence Length = 161676 Score = 240 bits (121), Expect = 1e-60 Identities = 128/131 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 138589 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 138530 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 138529 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 138470 Query: 121 gagaacccgtc 131 ||||||||||| Sbjct: 138469 gagaacccgtc 138459
>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048D11, from chromosome 3, complete sequence Length = 158911 Score = 240 bits (121), Expect = 1e-60 Identities = 128/131 (97%) Strand = Plus / Plus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 149421 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 149480 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgtatgggtg 120 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 149481 tcgtctcgccgctaccttatcctatttccatgcttctgtcgctccatccccgtatgggtg 149540 Query: 121 gagaacccgtc 131 ||||||||||| Sbjct: 149541 gagaacccgtc 149551
>emb|AJ535776.1|ZMA535776 Zea mays chloroplast 4.5S rRNA gene, 5S rRNA gene, tRNA-Arg gene, ORF23, tRNA-Asn gene, ORF63 and rps15 gene (partial), cultivar CM111 Length = 2941 Score = 194 bits (98), Expect = 6e-47 Identities = 102/104 (98%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 104 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 45 Query: 61 tcgtctngccgctaccttatcctatttccatacttctgtcgctc 104 |||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 44 tcgtctcgccgctaccttatcctatttccatacttctgtcgctc 1
>emb|AJ630601.1| Liparis loeselii chloroplast ITS2, 4.5S rRNA gene, and ITS3, isolate LipLV2 Length = 417 Score = 167 bits (84), Expect = 1e-38 Identities = 153/175 (87%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 186 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 127 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 126 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 67 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 66 gcaggggcagagaacccgtcgctgtctcggctgtgataccggaggctctggggaa 12
>emb|AJ630600.1| Liparis loeselii chloroplast ITS2, 4.5S rRNA gene, and ITS3, isolate LipLSw1 Length = 417 Score = 167 bits (84), Expect = 1e-38 Identities = 153/175 (87%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 186 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 127 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 126 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 67 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 66 gcaggggcagagaacccgtcgctgtctcggctgtgataccggaggctctggggaa 12
>emb|AJ551459.1|LLO551459 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLC Length = 505 Score = 167 bits (84), Expect = 1e-38 Identities = 153/175 (87%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 190 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 131 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 130 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 71 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70 gcaggggcagagaacccgtcgctgtctcggctgtgataccggaggctctggggaa 16
>emb|AJ551458.1|LLO551458 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLS Length = 509 Score = 167 bits (84), Expect = 1e-38 Identities = 153/175 (87%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 190 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 131 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 130 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 71 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70 gcaggggcagagaacccgtcgctgtctcggctgtgataccggaggctctggggaa 16
>emb|AJ551457.1|LLO551457 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLK Length = 494 Score = 167 bits (84), Expect = 1e-38 Identities = 153/175 (87%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 190 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 131 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 130 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 71 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70 gcaggggcagagaacccgtcgctgtctcggctgtgataccggaggctctggggaa 16
>emb|AJ551456.1|LLO551456 Liparis loeselii chloroplast 23S rRNA gene (partial), ITS2, 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipLV1 Length = 518 Score = 167 bits (84), Expect = 1e-38 Identities = 153/175 (87%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 190 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 131 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 130 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 71 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 70 gcaggggcagagaacccgtcgctgtctcggctgtgataccggaggctctggggaa 16
>gb|AY196909.1| Asphodelus lusitanicus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene and internal transcribed spacer 3, complete sequence; and 5S ribosomal RNA gene, partial sequence; chloroplast genes for chloroplast products Length = 605 Score = 159 bits (80), Expect = 3e-36 Identities = 152/175 (86%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 241 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 182 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 181 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 122 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 121 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 67
>gb|AY196908.1| Asphodelus ramosus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene and internal transcribed spacer 3, complete sequence; and 5S ribosomal RNA gene, partial sequence; chloroplast genes for chloroplast products Length = 605 Score = 159 bits (80), Expect = 3e-36 Identities = 152/175 (86%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 241 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 182 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 181 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 122 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 121 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 67
>gb|L41568.1|MAICPITSA Magnolia campbellii chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 486 Score = 151 bits (76), Expect = 8e-34 Identities = 151/175 (86%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 210 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 151 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||||||| Sbjct: 150 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccatcccc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 90 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 36
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 151 bits (76), Expect = 8e-34 Identities = 151/175 (86%), Gaps = 10/175 (5%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||| ||||||| || Sbjct: 131229 gttaggatgcctcagctgcatacatcactgcacttccacttggcacctatcgtaatgata 131288 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 131289 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 131348 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 131349 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 131403 Score = 151 bits (76), Expect = 8e-34 Identities = 151/175 (86%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||| ||||||| || Sbjct: 106742 gttaggatgcctcagctgcatacatcactgcacttccacttggcacctatcgtaatgata 106683 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 106682 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 106623 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 106622 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 106568
>gb|L29444.1|MAICP Magnolia campbellii chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 508 Score = 151 bits (76), Expect = 8e-34 Identities = 151/175 (86%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 241 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 182 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||||||| Sbjct: 181 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccatcccc 122 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 121 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 67
>gb|M35405.1|BLYCPRR45S H.vulgare chloroplast 4.5S ribosomal RNA Length = 96 Score = 145 bits (73), Expect = 5e-32 Identities = 77/79 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 79 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 20 Query: 61 tcgtctngccgctacctta 79 |||||| |||||||||||| Sbjct: 19 tcgtctcgccgctacctta 1
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 143 bits (72), Expect = 2e-31 Identities = 150/175 (85%), Gaps = 10/175 (5%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 131994 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 132053 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||||||| Sbjct: 132054 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccatcccc 132113 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| |||| |||||||| ||||| Sbjct: 132114 gcaggggcagagaacccgtcgctgtctcggctgtgctaccagaggctctggggaa 132168 Score = 143 bits (72), Expect = 2e-31 Identities = 150/175 (85%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 108288 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 108229 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||||||| Sbjct: 108228 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccatcccc 108169 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| |||| |||||||| ||||| Sbjct: 108168 gcaggggcagagaacccgtcgctgtctcggctgtgctaccagaggctctggggaa 108114
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 143 bits (72), Expect = 2e-31 Identities = 150/175 (85%), Gaps = 10/175 (5%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 124874 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 124933 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 124934 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 124993 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | ||| ||||||||| |||||||||||||||| ||||||||||||| ||||| Sbjct: 124994 acaggggcagagaacccgccgctgtctcggctgtgctaccggaggctctggggaa 125048 Score = 143 bits (72), Expect = 2e-31 Identities = 150/175 (85%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 110048 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 109989 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 109988 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 109929 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | ||| ||||||||| |||||||||||||||| ||||||||||||| ||||| Sbjct: 109928 acaggggcagagaacccgccgctgtctcggctgtgctaccggaggctctggggaa 109874
>emb|AJ551460.1|LLO551460 Liparis cf. distans LipV chloroplast ITS2 (partial), 4.5S rRNA gene, ITS3 and 5S rRNA gene (partial), isolate LipV Length = 464 Score = 139 bits (70), Expect = 3e-30 Identities = 142/165 (86%), Gaps = 10/165 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 166 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 107 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 106 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 47 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggagg 156 | | ||| ||||||||| |||||||||||||||| ||||||||| Sbjct: 46 gcaggggcagagaacccgccgctgtctcggctgtgctaccggagg 2
>gb|L41592.1|CTACPITSA Caryota mitis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 137 bits (69), Expect = 1e-29 Identities = 150/175 (85%), Gaps = 12/175 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 149 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||| || Sbjct: 148 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccat--cc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 90 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 36
>gb|M57605.1|BLYRR45S Barley chloroplast 4.5S rRNA Length = 95 Score = 137 bits (69), Expect = 1e-29 Identities = 76/79 (96%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 79 cgttaggatgcctcagctgcatacatgactgcacttccacttgacacctatttaaacggc 20 Query: 61 tcgtctngccgctacctta 79 |||||| |||||||||||| Sbjct: 19 tcgtctcgccgctacctta 1
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 133 bits (67), Expect = 2e-28 Identities = 70/71 (98%) Strand = Plus / Minus Query: 93 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 53121 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 53062 Query: 153 gaggctctagg 163 ||||||||||| Sbjct: 53061 gaggctctagg 53051
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0475F05 Length = 147522 Score = 133 bits (67), Expect = 2e-28 Identities = 70/71 (98%) Strand = Plus / Minus Query: 93 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 121085 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 121026 Query: 153 gaggctctagg 163 ||||||||||| Sbjct: 121025 gaggctctagg 121015
>emb|AJ535053.1|OSA535053 Oryza sativa (japonica cultivar-group) pdr2 gene for PDR-like ABC transporter, exons 1-22 Length = 15112 Score = 133 bits (67), Expect = 2e-28 Identities = 70/71 (98%) Strand = Plus / Plus Query: 93 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4537 cttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgctaccg 4596 Query: 153 gaggctctagg 163 ||||||||||| Sbjct: 4597 gaggctctagg 4607
>gb|M10541.1|WHTCPRRK Wheat (T.aestivum) chloroplastid ribosome-associated 4.5S RNA Length = 96 Score = 133 bits (67), Expect = 2e-28 Identities = 71/73 (97%) Strand = Plus / Minus Query: 1 cgttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 80 cgttaggatgcctcagctgcatacatcactgcacttccacttgacacctatttaaacggc 21 Query: 61 tcgtctngccgct 73 |||||| |||||| Sbjct: 20 tcgtctcgccgct 8
>gb|L41573.1|TLDCPITSA Tillandsia usneoides chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 129 bits (65), Expect = 3e-27 Identities = 149/175 (85%), Gaps = 12/175 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacgcctatcgtaatgata 149 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||| || Sbjct: 148 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccat--cc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 90 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 36
>gb|L41571.1|SQECPITSA Semele androgyna chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 491 Score = 129 bits (65), Expect = 3e-27 Identities = 150/176 (85%), Gaps = 11/176 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 211 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 152 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc-c 110 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| | Sbjct: 151 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatccgc 92 Query: 111 cgtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 91 agggggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 36
>gb|L41547.1|MNUCPITSA Molineria recurvata chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 491 Score = 129 bits (65), Expect = 3e-27 Identities = 143/167 (85%), Gaps = 12/167 (7%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 149 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||| || Sbjct: 148 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccat--cc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggct 158 | | ||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 90 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggct 44
>gb|L41600.1|DRICPITSA Drimys winteri chloroplast 4.5S rRNA-containing 23S-5S internal transcribed spacer in inverted repeat Length = 490 Score = 129 bits (65), Expect = 3e-27 Identities = 149/175 (85%), Gaps = 12/175 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 149 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||| || Sbjct: 148 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccat--cc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 90 gcaggggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 36
>gb|AY029747.1| Populus deltoides 23S ribosomal RNA, 4.5S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence; chloroplast genes for chloroplast products Length = 5157 Score = 125 bits (63), Expect = 4e-26 Identities = 145/172 (84%), Gaps = 12/172 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 4778 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 4719 Query: 55 aacggctcgtctngccgctaccttatcctatttccatacttctgtcgctccatccccgta 114 |||||||||||| |||| ||||| || |||| | ||||||||| |||||||||| | Sbjct: 4718 aacggctcgtctcgccgtgacctt---ctctttcaaaacttctgtccgtccatccccgca 4662 Query: 115 tgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 || |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 4661 --ggcagagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 4612
>gb|L41594.1|RYPCPITSA Cryptocoryne ciliata chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 121 bits (61), Expect = 7e-25 Identities = 148/175 (84%), Gaps = 12/175 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 149 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || ||||||||||| |||||| || Sbjct: 148 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcactccat--cc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| ||||||||||||||||||||||| || ||||||||||||| ||||| Sbjct: 90 gcaggggcagagaacccgtcgctgtctcggctatgctaccggaggctctggggaa 36
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 119 bits (60), Expect = 3e-24 Identities = 147/175 (84%), Gaps = 10/175 (5%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 136586 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 136645 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || ||||||||||||||||||||| Sbjct: 136646 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatccca 136705 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | || ||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct: 136706 gcagggacagagaacccgtcgctgtctcaactgtgctaccagaggctctggggaa 136760 Score = 119 bits (60), Expect = 3e-24 Identities = 147/175 (84%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 113359 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 113300 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || ||||||||||||||||||||| Sbjct: 113299 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatccca 113240 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | || ||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct: 113239 gcagggacagagaacccgtcgctgtctcaactgtgctaccagaggctctggggaa 113185
>gb|L41550.1|PMACPITSA Peperomia glabrata chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 510 Score = 119 bits (60), Expect = 3e-24 Identities = 147/175 (84%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||| ||||||||||||||||||||||||| |||||||||||||| || Sbjct: 210 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 151 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | ||||||||||||||| |||| Sbjct: 150 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccaccccc 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||| ||||||| |||||||||||||||||| |||||||||||| |||||| Sbjct: 90 ccgggggtagagaacctgtcgctgtctcggctgtgctaccggaggctccagggaa 36
>gb|L41548.1|NYHCPITSA Nymphea coerulea chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 506 Score = 119 bits (60), Expect = 3e-24 Identities = 147/175 (84%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 210 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 151 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || ||||||||||||||||||||| Sbjct: 150 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatccca 91 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | || ||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct: 90 gcagggacagagaacccgtcgctgtctcaactgtgctaccagaggctctggggaa 36
>gb|L29443.1|PMACP Peperomia glabrata chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 531 Score = 119 bits (60), Expect = 3e-24 Identities = 147/175 (84%), Gaps = 10/175 (5%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||| ||||||||||||||||||||||||| |||||||||||||| || Sbjct: 241 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 182 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | ||||||||||||||| |||| Sbjct: 181 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccaccccc 122 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||| ||||||| |||||||||||||||||| |||||||||||| |||||| Sbjct: 121 ccgggggtagagaacctgtcgctgtctcggctgtgctaccggaggctccagggaa 67
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 115 bits (58), Expect = 4e-23 Identities = 127/149 (85%), Gaps = 10/149 (6%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 139109 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 139168 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 139169 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 139228 Query: 112 gtatgggtggagaacccgtcgctgtctcg 140 | | || |||||||||||||||||||| Sbjct: 139229 gcagggacagagaacccgtcgctgtctcg 139257 Score = 115 bits (58), Expect = 4e-23 Identities = 127/149 (85%), Gaps = 10/149 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 114548 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 114489 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 114488 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 114429 Query: 112 gtatgggtggagaacccgtcgctgtctcg 140 | | || |||||||||||||||||||| Sbjct: 114428 gcagggacagagaacccgtcgctgtctcg 114400
>gb|AY840211.1| Nuphar advena internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 755 Score = 111 bits (56), Expect = 7e-22 Identities = 147/175 (84%), Gaps = 11/175 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 190 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 131 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||| ||| Sbjct: 130 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccat-ccc 72 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | || ||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct: 71 gcagggacagagaacccgtcgctgtctcaactgtgctaccagaggctctggggaa 17
>gb|L41572.1|STZCPITSA Strelitzia nicolaii chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 480 Score = 105 bits (53), Expect = 4e-20 Identities = 135/160 (84%), Gaps = 11/160 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacaccta-------ttta 54 ||||||||||||||||||||||||||||||||||| ||||||| ||||| | || Sbjct: 210 gttaggatgcctcagctgcatacatcactgcacttccacttgatacctatcgtaattata 151 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||| ||| Sbjct: 150 aacggctcgtctcgccgtgaccttatcttgaattctcaatacttctgtcgctccat-ccc 92 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 | | || |||||||||||||||||||||||||| |||| Sbjct: 91 gcagggacagagaacccgtcgctgtctcggctgtgctacc 52
>gb|L41603.1|EPOCPITSA Eupomatia laurina chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 485 Score = 105 bits (53), Expect = 4e-20 Identities = 147/175 (84%), Gaps = 13/175 (7%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 207 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 148 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||| || Sbjct: 147 aacggctcgtctcgccgtgaccttatcttggattctcaagacttctgtcgctccat--cc 90 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | ||| ||||||||||| | |||||||||||| ||||||||||||| ||||| Sbjct: 89 gcaggggcagagaacccgtc-cggtctcggctgtgctaccggaggctctggggaa 36
>gb|AY840213.1| Victoria amazonica internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 764 Score = 103 bits (52), Expect = 2e-19 Identities = 146/175 (83%), Gaps = 11/175 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 190 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 131 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||| || Sbjct: 130 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccat-cca 72 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 | | || ||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct: 71 gcagggacagagaacccgtcgctgtctcaactgtgctaccagaggctctggggaa 17
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 129882 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 129941 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 129942 ggaggctctggggaa 129956 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 106996 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 106937 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 106936 ggaggctctggggaa 106922 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 129782 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 129831 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 107096 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 107047
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133407 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133466 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 133467 ggaggctctggggaa 133481 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109223 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 109164 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 109163 ggaggctctggggaa 109149 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133304 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 133353 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 109326 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 109277
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 128773 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 128832 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 128833 ggaggctctggggaa 128847 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 105862 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 105803 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 105802 ggaggctctggggaa 105788 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 128673 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 128722 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 105962 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 105913
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 134043 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 134102 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 134103 ggaggctctggggaa 134117 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109514 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 109455 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 109454 ggaggctctggggaa 109440 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133940 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 133989 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 109617 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 109568
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133699 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133758 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 133759 ggaggctctggggaa 133773 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108726 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108667 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 108666 ggaggctctggggaa 108652 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133599 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 133648 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108826 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108777
>gb|L41598.1|DELCPITSA Delphinium elatum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 493 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 110 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 51 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 50 ggaggctctggggaa 36 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 210 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 161
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133405 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133464 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 133465 ggaggctctggggaa 133479 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109221 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 109162 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 109161 ggaggctctggggaa 109147 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133302 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 133351 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 109324 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 109275
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 129875 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 129934 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 129935 ggaggctctggggaa 129949 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 106994 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 106935 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 106934 ggaggctctggggaa 106920 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 129775 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 129824 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 107094 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 107045
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 133136 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 133195 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 133196 ggaggctctggggaa 133210 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 109002 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108943 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 108942 ggaggctctggggaa 108928 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133033 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 133082 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 109105 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 109056
>gb|L29445.1|DELCP Delphinium elatum chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 513 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 141 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 82 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 81 ggaggctctggggaa 67 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 241 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 192
>gb|J01446.1|TOBCPRG23 Tobacco chloroplast 23S and 4.5S rRNA genes Length = 3166 Score = 101 bits (51), Expect = 6e-19 Identities = 69/75 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 2987 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 2928 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 2927 ggaggctctggggaa 2913 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3090 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 3041
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 99.6 bits (50), Expect = 3e-18 Identities = 134/161 (83%), Gaps = 10/161 (6%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 49700 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 49759 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||| ||| Sbjct: 49760 aacggctcgtctcgccgtgaccttatcttgaattctcaaaacttctgtcgctccatgccc 49819 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 | ||| |||||||||||||||| ||| ||||| ||||| Sbjct: 49820 acaggggcagagaacccgtcgctgtatcgactgtgctaccg 49860 Score = 99.6 bits (50), Expect = 3e-18 Identities = 134/161 (83%), Gaps = 10/161 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 40128 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 40069 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||| ||| Sbjct: 40068 aacggctcgtctcgccgtgaccttatcttgaattctcaaaacttctgtcgctccatgccc 40009 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 | ||| |||||||||||||||| ||| ||||| ||||| Sbjct: 40008 acaggggcagagaacccgtcgctgtatcgactgtgctaccg 39968
>emb|X62099.1|CHEVIARRN E.virginiana plastid ribosomal RNA operon, trnI and trnA pseudogenes Length = 7395 Score = 99.6 bits (50), Expect = 3e-18 Identities = 134/161 (83%), Gaps = 10/161 (6%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 7056 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtaatgata 6997 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || | |||||||||||||||| ||| Sbjct: 6996 aacggctcgtctcgccgtgaccttatcttgaattctcaaaacttctgtcgctccatgccc 6937 Query: 112 gtatgggtggagaacccgtcgctgtctcggctgtgataccg 152 | ||| |||||||||||||||| ||| ||||| ||||| Sbjct: 6936 acaggggcagagaacccgtcgctgtatcgactgtgctaccg 6896
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 97.6 bits (49), Expect = 1e-17 Identities = 105/124 (84%) Strand = Plus / Plus Query: 43 gacacctatttaaacggctcgtctngccgctaccttatcctatttccatacttctgtcgc 102 |||||||||| |||||| |||||| ||||| |||||||||||||||||||| |||| Sbjct: 107415 gacacctattcaaacggttcgtctcattactaccgtatcctatttccatacttctatcgc 107474 Query: 103 tccatccccgtatgggtggagaacccgtcgctgtctcggctgtgataccggaggctctag 162 |||||||| ||| | ||| |||||| || |||||||||||||| ||| |||||||||| Sbjct: 107475 tccatcccggtaagagtgaagaacctgttactgtctcggctgtgctactagaggctctag 107534 Query: 163 ggaa 166 |||| Sbjct: 107535 ggaa 107538
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 97.6 bits (49), Expect = 1e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 137465 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 137524 Query: 152 ggaggctct 160 ||||||||| Sbjct: 137525 ggaggctct 137533 Score = 97.6 bits (49), Expect = 1e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 112595 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 112536 Query: 152 ggaggctct 160 ||||||||| Sbjct: 112535 ggaggctct 112527 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 137365 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 137414 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 112695 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 112646
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 95.6 bits (48), Expect = 4e-17 Identities = 63/68 (92%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 136816 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 136875 Query: 152 ggaggctc 159 |||||||| Sbjct: 136876 ggaggctc 136883 Score = 95.6 bits (48), Expect = 4e-17 Identities = 63/68 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 112483 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 112424 Query: 152 ggaggctc 159 |||||||| Sbjct: 112423 ggaggctc 112416 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 136716 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 136765 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 112583 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 112534
>emb|X06235.1|MIOBRRNP Oenothera berteriana mitDNA with part of plastid rRNA operon Length = 2900 Score = 95.6 bits (48), Expect = 4e-17 Identities = 63/68 (92%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 2491 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 2432 Query: 152 ggaggctc 159 |||||||| Sbjct: 2431 ggaggctc 2424 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 2591 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctat 2542
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 136511 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 136560 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 112586 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 112537 Score = 54.0 bits (27), Expect = 1e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||| ||| ||||||| | || |||||||| | || |||||||||||| |||| Sbjct: 136611 acttctgtcactcgatccccgcagggacagagaaccccttgccgtctcggctgtgctacc 136670 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 136671 ggaggctctggggaa 136685 Score = 54.0 bits (27), Expect = 1e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||| ||| ||||||| | || |||||||| | || |||||||||||| |||| Sbjct: 112486 acttctgtcactcgatccccgcagggacagagaaccccttgccgtctcggctgtgctacc 112427 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 112426 ggaggctctggggaa 112412
>gb|J01451.1|TOBCPRA1 Nicotiana tabacum 4.5S ribosomal RNA, 5S ribosomal RNA, tRNA-Arg, and tRNA-Asn genes, complete sequence; and unknown genes; chloroplast Length = 1676 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 94 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 45
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 133008 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 133067 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 133068 ggaggctctggggaa 133082 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 132908 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 132957 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108998 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108949 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 108898 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 108839 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 108838 ggaggctctggggaa 108824
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 128781 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 128830 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 104664 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 104615 Score = 44.1 bits (22), Expect = 0.13 Identities = 40/46 (86%) Strand = Plus / Plus Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||| ||| |||||| || ||| |||||| ||||| Sbjct: 128928 gagaacccgtcgctgcctcagctgtgctatcggcggctctggggaa 128973 Score = 44.1 bits (22), Expect = 0.13 Identities = 40/46 (86%) Strand = Plus / Minus Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||| ||| |||||| || ||| |||||| ||||| Sbjct: 104517 gagaacccgtcgctgcctcagctgtgctatcggcggctctggggaa 104472
>emb|AJ001025.1|CLPACHLLN Picea abies chloroplast DNA for chlL, trnR, trnH, trnN, 23S rRNA, 4.5S rRNA and 5S rRNA genes Length = 4027 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 793 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 744
>gb|AY840214.1| Degeneria vitiensis internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 748 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 187 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 138 Score = 75.8 bits (38), Expect = 4e-11 Identities = 44/46 (95%) Strand = Plus / Minus Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 62 gagaacccgtcgctgtctcggctgtgctaccggaggctctggggaa 17
>gb|AY840212.1| Nymphaea gigantea internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 723 Score = 93.7 bits (47), Expect = 2e-16 Identities = 101/118 (85%), Gaps = 10/118 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 156 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctatcgtgatgata 97 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc 109 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| Sbjct: 96 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcc 39
>gb|AY840210.1| Cabomba caroliniana internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 811 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 189 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 140 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 atacttctgtcgctccatcc 109 |||||||||||||||||||| Sbjct: 91 atacttctgtcgctccatcc 72 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 gagaacccgtcgctgtctc 139 ||||||||||||||||||| Sbjct: 62 gagaacccgtcgctgtctc 44
>gb|AY840209.1| Barclaya longifolia internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast Length = 777 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 189 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 140 Score = 52.0 bits (26), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||| ||||| |||| |||||||| ||||| Sbjct: 62 gagaacccgtcgctgtctcaactgtgctacctgaggctctggggaa 17
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132652 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132711 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 132712 ggaagctctggggaa 132726 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 132549 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 132598 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108487 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108438 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108384 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108325 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 108324 ggaagctctggggaa 108310
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 89252 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 89203
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||||| |||| Sbjct: 130105 acttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctgtgctacc 130164 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 130165 ggaggctctggggaa 130179 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 130005 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 130054 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 106759 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 106710 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||||| |||| Sbjct: 106659 acttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctgtgctacc 106600 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 106599 ggaggctctggggaa 106585
>gb|AY196907.1| Quercus suber 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene and internal transcribed spacer 3, complete sequence; and 5S ribosomal RNA gene, partial sequence; chloroplast genes for chloroplast products Length = 635 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 241 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 192 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 141 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 82 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 81 ggaggctctggggaa 67
>gb|AF242851.1|AF242851 Brassica napus 4.5S ribosomal RNA, 5S ribosomal RNA and tRNA-Arg (trnR) genes, complete sequence; chloroplast genes for chloroplast products Length = 1084 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 94 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 45
>emb|X06044.1|GMRN45SI Soybean 4.5 - 5S rRNA intergenic region Length = 472 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 95 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 46
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132788 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132847 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 132848 ggaagctctggggaa 132862 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 132685 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 132734 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108658 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108609 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108555 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108496 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 108495 ggaagctctggggaa 108481
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132786 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132845 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 132846 ggaagctctggggaa 132860 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 132683 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 132732 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108655 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108606 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108552 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108493 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 108492 ggaagctctggggaa 108478
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132698 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132757 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 132758 ggaagctctggggaa 132772 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 132595 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 132644 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108533 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108484 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108430 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108371 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 108370 ggaagctctggggaa 108356
>gb|L41586.1|PPQCPITSA Piper longum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 501 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 212 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 163 Score = 73.8 bits (37), Expect = 1e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 122 agaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 80 agaacccgtcgctgtctcggctgtgctaccggaggctccagggaa 36
>gb|L41585.1|PINCPITSA Pinus canariensis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 509 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 216 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 167
>gb|L41564.1|FRUCPITSA Ferulago galbanifera chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 492 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 159 Score = 71.9 bits (36), Expect = 6e-10 Identities = 61/68 (89%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||| | | ||| |||||||||||||||||| ||||||| |||| Sbjct: 108 acttctgtcgctccatccc-gcaggggcagagaacccgtcgctgtcttggctgtgctacc 50 Query: 152 ggaggctc 159 |||||||| Sbjct: 49 ggaggctc 42
>gb|L41602.1|EYGCPITSA Eryngium billardieri chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 520 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 159 Score = 71.9 bits (36), Expect = 6e-10 Identities = 61/68 (89%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||| | | ||| |||||||||||||||||| ||||||| |||| Sbjct: 108 acttctgtcgctccatccc-gcaggggcagagaacccgtcgctgtcttggctgtgctacc 50 Query: 152 ggaggctc 159 |||||||| Sbjct: 49 ggaggctc 42
>gb|L41580.1|ALWCPITSA Alchemilla vulgaris chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 520 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 208 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 159 Score = 48.1 bits (24), Expect = 0.008 Identities = 63/75 (84%), Gaps = 2/75 (2%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||| |||| | ||| || ||||| |||| |||| ||||||| |||| Sbjct: 108 acttctgtcgctcca--cccgcaggggcagaaaacccatcgccgtcttggctgtgctacc 51 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 50 ggaggctctggggaa 36
>gb|L41565.1|GBICPITSA Ginkgo biloba chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 516 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 215 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 166 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 atacttctgtcgctccatcccc 111 |||||||||||||||||||||| Sbjct: 118 atacttctgtcgctccatcccc 97
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 133287 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 133346 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 133347 ggaggctctggggaa 133361 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133187 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 133236 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 109220 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 109171 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||| Sbjct: 109120 acttctgtcgctccatccccgcaggggcagagaacccatcgctgtctcggctgtgctacc 109061 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 109060 ggaggctctggggaa 109046
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 128873 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 128922 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 106521 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 106472 Score = 77.8 bits (39), Expect = 9e-12 Identities = 66/75 (88%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |||| Sbjct: 128974 acttctttcgctccatccccgctggggcagagaacccatcgctgtctcggctgtgctacc 129033 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 129034 ggaggctctggggaa 129048 Score = 77.8 bits (39), Expect = 9e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |||| Sbjct: 106420 acttctttcgctccatccccgctggggcagagaacccatcgctgtctcggctgtgctacc 106361 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 106360 ggaggctctggggaa 106346
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||||| |||| Sbjct: 131066 acttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctgtgctacc 131125 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 131126 ggaggctctggggaa 131140 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 130966 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 131015 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 107683 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 107634 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||||| |||| Sbjct: 107583 acttctgtcactccatccccgcaggggcggagaacccgttgctgtctcggctgtgctacc 107524 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 107523 ggaggctctggggaa 107509
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 127535 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 127584 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 104921 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 104872 Score = 56.0 bits (28), Expect = 3e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||||| ||||||| |||| | | ||| |||||||| ||||| ||||||||||| |||| Sbjct: 127636 acttctttcgctccgtccctgcaggggcagagaacccatcgctatctcggctgtgctacc 127695 Query: 152 ggaggctc 159 |||||||| Sbjct: 127696 ggaggctc 127703 Score = 56.0 bits (28), Expect = 3e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||||| ||||||| |||| | | ||| |||||||| ||||| ||||||||||| |||| Sbjct: 104820 acttctttcgctccgtccctgcaggggcagagaacccatcgctatctcggctgtgctacc 104761 Query: 152 ggaggctc 159 |||||||| Sbjct: 104760 ggaggctc 104753
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 132665 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 132724 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 132725 ggaagctctggggaa 132739 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 132562 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 132611 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 108500 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 108451 Score = 93.7 bits (47), Expect = 2e-16 Identities = 68/75 (90%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| Sbjct: 108397 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgtctcggctgtgctacc 108338 Query: 152 ggaggctctagggaa 166 ||| ||||| ||||| Sbjct: 108337 ggaagctctggggaa 108323
>gb|L29446.1|MRRCP Myrrhis odorata chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 546 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 238 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 189 Score = 71.9 bits (36), Expect = 6e-10 Identities = 61/68 (89%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||| | | ||| |||||||||||||||||| ||||||| |||| Sbjct: 138 acttctgtcgctccatccc-gcaggggcagagaacccgtcgctgtcttggctgtgctacc 80 Query: 152 ggaggctc 159 |||||||| Sbjct: 79 ggaggctc 72
>emb|X04977.1|CHSORN45 Spinach chloroplast 4.5S rRNA gene and 23S rRNA gene 3'end Length = 323 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 305 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 256 Score = 44.1 bits (22), Expect = 0.13 Identities = 40/46 (86%) Strand = Plus / Minus Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||||||||||| ||| |||||| || ||| |||||| ||||| Sbjct: 158 gagaacccgtcgctgcctcagctgtgctatcggcggctctggggaa 113
>emb|X01277.1|CHNTRRNA Tobacco chloroplast genes for 4.5S and 5S ribosomal RNA Length = 750 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 94 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 45
>gb|M33098.1|TOMCPKA Tomato chloroplast 4.5S ribosomal RNA Length = 103 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 36
>gb|M10757.1|SPICPRRK Spinach chloroplast 4.5S rRNA Length = 106 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 88 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 39
>gb|M36165.1|LIGCPCG L.calthifolia chloroplast 4.5S rRNA gene Length = 103 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 36
>gb|M75719.1|ALSCPRRNA Alnus incana chloroplast 23S rRNA, 4.5S rRNA, 5S rRNA, tRNA-Arg, and tRNA-Asn genes Length = 1981 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 504 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 455 Score = 60.0 bits (30), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 121 gagaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||||| ||||||||||||||||| |||||||| |||| ||||| Sbjct: 377 gagaacccatcgctgtctcggctgtgctaccggagcctctggggaa 332
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 93.7 bits (47), Expect = 2e-16 Identities = 49/50 (98%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 91340 gttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 91291
>gb|J01439.1|SOLCPRG45 Spirodela punctata chloroplast 4.5S and 5S ribosomal RNA genes Length = 587 Score = 91.7 bits (46), Expect = 6e-16 Identities = 48/49 (97%) Strand = Plus / Minus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 88 ttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 40
>emb|AJ318074.1|CSA318074 Cucumis sativus chloroplast ccsA gene, ndhD gene (partial), 4.5S rRNA gene, 23S rRNA gene (partial) and 5S rRNA gene Length = 6689 Score = 91.7 bits (46), Expect = 6e-16 Identities = 48/49 (97%) Strand = Plus / Minus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3034 ttaggatgcctcagctgcatacatcactgcacttccacttgacacctat 2986 Score = 63.9 bits (32), Expect = 1e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 123 gaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 |||||| ||||||||||||||||| ||||||||||||| ||||| Sbjct: 2910 gaacccatcgctgtctcggctgtgctaccggaggctctggggaa 2867
>gb|L41596.1|CYRCPITSA Cycas revoluta chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 513 Score = 89.7 bits (45), Expect = 2e-15 Identities = 102/120 (85%), Gaps = 10/120 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct: 216 gttaggatgcctcagctgcatgcatcactgcacttccacttgacacctatcgtgatgata 157 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 156 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 97
>gb|L29448.1|CYRCP Cycas revoluta chloroplast 23s - 5s ribosomal RNA genes, internal transcribed spacer Length = 535 Score = 89.7 bits (45), Expect = 2e-15 Identities = 102/120 (85%), Gaps = 10/120 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct: 247 gttaggatgcctcagctgcatgcatcactgcacttccacttgacacctatcgtgatgata 188 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcccc 111 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||||| Sbjct: 187 aacggctcgtctcgccgtgaccttatcttggattctcaatacttctgtcgctccatcccc 128
>gb|M35407.1|COMCPRR45S C.communis chloroplast 4.5S ribosomal RNA Length = 103 Score = 89.7 bits (45), Expect = 2e-15 Identities = 74/85 (87%), Gaps = 7/85 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||| ||||||||| |||||||||||||| || Sbjct: 85 gttaggatgcctcagctgcatacattactgcacttccacttgacacctatcgtaatgata 26 Query: 55 aacggctcgtctngccgctacctta 79 |||||||||||| |||||||||||| Sbjct: 25 aacggctcgtctcgccgctacctta 1
>gb|AC151668.38| Medicago truncatula clone mth2-6e22, complete sequence Length = 110949 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 7211 gttaggatgcctcagctgcatacattactgcacttccacttgacacctat 7162 Score = 77.8 bits (39), Expect = 9e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||||| | |||||||||||| | ||| |||||||| ||||||| |||||||||||||| Sbjct: 7110 acttcttttgctccatccccgcaggggcagagaacccatcgctgtttcggctgtgatacc 7051 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 7050 ggaggctctggggaa 7036
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 139895 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctat 139944 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 113433 gttaggatgtctcagctgcatacatcactgcacttccacttgacacctat 113384 Score = 58.0 bits (29), Expect = 9e-06 Identities = 41/45 (91%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgt 136 ||||||||||||||||||||| | ||| |||||||||||||||| Sbjct: 139995 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgt 140039 Score = 58.0 bits (29), Expect = 9e-06 Identities = 41/45 (91%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgt 136 ||||||||||||||||||||| | ||| |||||||||||||||| Sbjct: 113333 acttctgtcgctccatccccgcaggggcagagaacccgtcgctgt 113289
>gb|AF525938.2| Casuarina equisetifolia 23S ribosomal RNA and 4.5S ribosomal RNA genes, complete sequence; chloroplast Length = 3069 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2825 gttaagatgcctcagctgcatacatcactgcacttccacttgacacctat 2776 Score = 46.1 bits (23), Expect = 0.033 Identities = 62/75 (82%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||| |||||||||||||||| | || |||||||| || |||||||| |||| |||| Sbjct: 2729 acttttgtcgctccatccccgcagggacagagaacccatcattgtctcggttgtgctacc 2670 Query: 152 ggaggctctagggaa 166 ||||||||| |||| Sbjct: 2669 agaggctctaaggaa 2655
>gb|U53856.1|ATU53856 Arabidopsis thaliana glutathione synthetase (gsh2) gene, complete cds Length = 4374 Score = 85.7 bits (43), Expect = 4e-14 Identities = 45/46 (97%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacac 47 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 504 gttaggatgcctcagctgcatacatcactgcacttccacttgacac 459 Score = 52.0 bits (26), Expect = 5e-04 Identities = 60/70 (85%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgct-gtctcggctgtgatac 150 ||||||||| |||||| |||| | || | ||||||||| ||| |||||||||||| ||| Sbjct: 405 acttctgtcactccattcccgcagggcggaagaacccgttgcttgtctcggctgtgctac 346 Query: 151 cggaggctct 160 |||||||||| Sbjct: 345 cggaggctct 336
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 20714 gttaggatgcctcagctgcatacattactgcacttccacttgacacctat 20763 Score = 77.8 bits (39), Expect = 9e-12 Identities = 66/75 (88%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||||| | |||||||||||| | ||| |||||||| ||||||| |||||||||||||| Sbjct: 20815 acttcttttgctccatccccgcaggggcagagaacccatcgctgtttcggctgtgatacc 20874 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 20875 ggaggctctggggaa 20889
>gb|L41556.1|ZAMCPITSA Zamia floridiana chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 513 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct: 218 gttaggatgcctcagctgcatgcatcactgcacttccacttgacacctat 169
>gb|L41604.1|FGPCPITSA Fagopyrum sagittatum chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 526 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 210 gttaggatgcctcagctgcatacatcactgcacttccacctgacacctat 161 Score = 77.8 bits (39), Expect = 9e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| ||||||| |||||||||||||| ||| | || Sbjct: 110 acttctgtcgctccatccccgcaggggcagagaacctgtcgctgtctcggccgtgctgcc 51 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 50 ggaggctctggggaa 36
>gb|L41582.1|ANVCPITSA Annona montana chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 482 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct: 205 gttaggatgcctcagctacatacatcactgcacttccacttgacacctat 156
>gb|U28402.1|LLU28402 Lupinus luteus 23S/4.5S intergenic region, complete sequence, 4.5S ribosomal RNA gene, complete sequence and 4.5S/5S intergenic region, partial sequence, chloroplast gene for chloroplast RNA Length = 228 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct: 181 gttaggatgcctccgctgcatacatcactgcacttccacttgacacctat 132 Score = 65.9 bits (33), Expect = 4e-08 Identities = 42/45 (93%) Strand = Plus / Minus Query: 122 agaacccgtcgctgtctcggctgtgataccggaggctctagggaa 166 ||||||| ||||||||||||||||| ||||||||||||| ||||| Sbjct: 53 agaacccatcgctgtctcggctgtgctaccggaggctctggggaa 9
>gb|L29447.1|FGPCP Fagopyrum esculentum chloroplast 23S - 5S ribosomal RNA genes, internal transcribed spacer Length = 546 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 241 gttaggatgcctcagctgcatacatcactgcacttccacctgacacctat 192 Score = 77.8 bits (39), Expect = 9e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 ||||||||||||||||||||| | ||| ||||||| |||||||||||||| ||| | || Sbjct: 141 acttctgtcgctccatccccgcaggggcagagaacctgtcgctgtctcggccgtgctgcc 82 Query: 152 ggaggctctagggaa 166 ||||||||| ||||| Sbjct: 81 ggaggctctggggaa 67
>gb|M35404.1|APICPRR45S A.graveoleus chloroplast 4.5S ribosomal RNA Length = 103 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccactagacacctat 36
>gb|M36166.1|ACUCPCG A.calamus chloroplast 4.5S rRNA gene Length = 103 Score = 85.7 bits (43), Expect = 4e-14 Identities = 48/50 (96%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 85 gttaggatgcctcagctgcatacatcactgcacttccacttggcacctat 36
>gb|M35406.1|ALCCPRR45S A.tuberosum chloroplast 4.5S ribosomal RNA Length = 103 Score = 83.8 bits (42), Expect = 2e-13 Identities = 47/49 (95%) Strand = Plus / Minus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 84 ttaggatgcctcagctgcatacatcactgcacttccactagacacctat 36
>gb|AF518408.1| Megaceros tosanus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 711 Score = 79.8 bits (40), Expect = 2e-12 Identities = 48/51 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||||||||||||||||||||||| ||||||||| |||||| |||||||| Sbjct: 197 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatt 147
>gb|AF518407.1| Pogonatum urnigerum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 673 Score = 79.8 bits (40), Expect = 2e-12 Identities = 48/51 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||||||||||||||||||||||| ||||||||| |||||| |||||||| Sbjct: 197 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatt 147
>gb|AF518406.1| Polytrichum formosum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 669 Score = 79.8 bits (40), Expect = 2e-12 Identities = 48/51 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||||||||||||||||||||||| ||||||||| |||||| |||||||| Sbjct: 197 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatt 147
>gb|AF426188.1| Takakia lepidozioides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 816 Score = 79.8 bits (40), Expect = 2e-12 Identities = 100/119 (84%), Gaps = 10/119 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 201 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 142 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatccc 110 |||||||||||| |||| |||||||| | ||| || ||||||||||||||||||||| Sbjct: 141 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatccc 83
>gb|AF393612.1| Sphagnum rubellum large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3033 Score = 79.8 bits (40), Expect = 2e-12 Identities = 100/119 (84%), Gaps = 10/119 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat-------tta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 3015 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 2956 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatccc 110 |||||||||||| |||| |||||||| | ||| || ||||||||||||||||||||| Sbjct: 2955 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatccc 2897
>gb|AY305264.1| Cucumis melo clone M6-L12 orf124, orf118, tRNA-Met, and atp9 genes, complete sequence; and atp6 pseudogene, partial sequence; mitochondrial Length = 10403 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||| |||||||||||| ||||||| |||||||||||||| Sbjct: 970 gttaggatgcctcaactgcatacatcattgcacttccacttgacacctat 1019 Score = 52.0 bits (26), Expect = 5e-04 Identities = 62/74 (83%) Strand = Plus / Plus Query: 92 acttctgtcgctccatccccgtatgggtggagaacccgtcgctgtctcggctgtgatacc 151 |||| |||||||||||| ||||| ||| |||||||| | ||||||| |||| || |||| Sbjct: 1070 acttttgtcgctccatctccgtaggggcagagaacccattgctgtcttggctatgctacc 1129 Query: 152 ggaggctctaggga 165 ||| ||||| |||| Sbjct: 1130 ggaagctctgggga 1143
>gb|AF426192.1| Funaria hygrometrica 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 706 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 195 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 146
>gb|AF426191.1| Physcomitrium pyriforme 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 695 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 194 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 145
>gb|AF426190.1| Plagiomnium ellipticum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 743 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 195 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 146
>gb|AF426189.1| Splachnum luteum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 737 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 195 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 146
>gb|AF393587.1| Climacium dendroides large subunit ribosomal RNA (rrl) gene, complete sequence; chloroplast gene for chloroplast product Length = 3020 Score = 77.8 bits (39), Expect = 9e-12 Identities = 99/118 (83%), Gaps = 10/118 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 3002 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 2943 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc 109 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| Sbjct: 2942 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatcc 2885
>gb|L41581.1|ANECPITSA Angiopteris palmiformis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 526 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 216 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 167
>gb|L41601.1|EPKCPITSA Ephedra kokanica chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 483 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct: 172 gttaggatgtctcagctgcatgcatcactgcacttccacttgacacctat 123
>gb|AF033649.1| Racomitrium microcarpum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 752 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 209 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 160
>gb|AF033648.1|AF033648 Sphagnum palustre 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 789 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 216 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 167
>gb|AF033647.1|AF033647 Rhytidiadelphus triquetrus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 789 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 209 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 160
>gb|AF033646.1|AF033646 Ceratodon purpureus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 761 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 209 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 160
>gb|AF033645.1|AF033645 Pleurozium schreberi 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 766 Score = 77.8 bits (39), Expect = 9e-12 Identities = 99/118 (83%), Gaps = 10/118 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 204 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 145 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc 109 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| Sbjct: 144 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatcc 87
>gb|AF033644.1| Climacium dendroides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 767 Score = 77.8 bits (39), Expect = 9e-12 Identities = 99/118 (83%), Gaps = 10/118 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 206 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 147 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc 109 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| Sbjct: 146 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatcc 89
>gb|AF033643.1|AF033643 Tetraphis pellucida 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 772 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 211 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 162
>gb|AF033642.1| Hylocomium splendens 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 765 Score = 77.8 bits (39), Expect = 9e-12 Identities = 99/118 (83%), Gaps = 10/118 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 207 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 148 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc 109 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| Sbjct: 147 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatcc 90
>gb|AF033641.1| Schistostega pennata 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 761 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 209 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 160
>gb|AF033640.1| Homalia trichomanoides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 770 Score = 77.8 bits (39), Expect = 9e-12 Identities = 99/118 (83%), Gaps = 10/118 (8%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt-------ta 54 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| || Sbjct: 209 gttaggatgcctcagctgcatacattactgcacttccacttggcacctatcgtgatgata 150 Query: 55 aacggctcgtctngccgctaccttatcct--att-tccatacttctgtcgctccatcc 109 |||||||||||| |||| |||||||| | ||| || |||||||||||||||||||| Sbjct: 149 aacggctcgtcttgccgtgaccttatcttggattctcaatacttctgtcgctccatcc 92
>gb|AF033639.1| Orthotrichum speciosum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 734 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 212 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 163
>gb|AF033638.1|AF033638 Atrichum undulatum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 778 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 211 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 162
>gb|AF033636.1|AF033636 Rhodobryum roseum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 702 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 210 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 161
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 115145 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 115194 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 92957 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 92908
>emb|X55033.1|CHPSRRNAO P.sativum chloroplast DNA of the single ribosomal RNA operon Length = 7920 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 7477 gttaggatgcctcagctgcatacattactgtacttccacttgacacctat 7428
>emb|V00161.1|CHNT01 Tobacco chloroplast 4.5S ribosomal RNA Length = 103 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 85 gttaggatgcctcagtcgcatacatcactgcacttccacttgacacctat 36
>gb|M35056.1|MNICPRRKA M.rugicum 4.5S ribosomal RNA Length = 103 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 85 gttaggatgcctcagctgcatacattactgcacttccacttggcacctat 36
>gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA Length = 7920 Score = 77.8 bits (39), Expect = 9e-12 Identities = 47/50 (94%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| |||| |||||||||||||| Sbjct: 7477 gttaggatgcctcagctgcatacattactgtacttccacttgacacctat 7428
>gb|L41554.1|TQRCPITSA Trichomanes radicans chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 559 Score = 75.8 bits (38), Expect = 4e-11 Identities = 46/49 (93%) Strand = Plus / Minus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 221 ttaggatgcctcagctgcatacattactgcacttccacttggcacctat 173
>gb|L41555.1|WELCPITSA Welwitschia mirabilis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 474 Score = 75.8 bits (38), Expect = 4e-11 Identities = 46/49 (93%) Strand = Plus / Minus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct: 193 ttaggatgcctcagctgcatacatcactgcatctccacttgacacctat 145
>gb|AF033635.1| Buxbaumia aphylla 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 703 Score = 75.8 bits (38), Expect = 4e-11 Identities = 46/49 (93%) Strand = Plus / Minus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct: 167 ttaggatgcctcagctgcatacattactgcacttccacttggcacctat 119
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 71.9 bits (36), Expect = 6e-10 Identities = 62/70 (88%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggct 61 ||||||||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||| Sbjct: 112783 gttaggatgtctcagctgcatacattgctgtacttccacttgacaccta-ataaacggct 112841 Query: 62 cgtctngccg 71 ||||| |||| Sbjct: 112842 cgtcttgccg 112851 Score = 71.9 bits (36), Expect = 6e-10 Identities = 62/70 (88%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatttaaacggct 61 ||||||||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||| Sbjct: 89205 gttaggatgtctcagctgcatacattgctgtacttccacttgacaccta-ataaacggct 89147 Query: 62 cgtctngccg 71 ||||| |||| Sbjct: 89146 cgtcttgccg 89137
>gb|AF426182.1| Phaeoceros carolinianus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 822 Score = 71.9 bits (36), Expect = 6e-10 Identities = 47/51 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| |||||| |||||||| Sbjct: 197 gttagaatgcctcagctgcatacattactgcacttccacttggcacctatt 147
>gb|AF426181.1| Notothylas breutelii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 822 Score = 71.9 bits (36), Expect = 6e-10 Identities = 47/51 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| |||||| |||||||| Sbjct: 197 gttagaatgcctcagctgcatacattactgcacttccacttggcacctatt 147
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 146916 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 146867 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 85935 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 85984
>emb|X58863.1|CARRN455 C.americana plastid 4.5S rRNA and 5S rRNA genes and spacer region Length = 429 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 99 gttaggagtcctcagctgcatacatcactgcacttctacttgacacctat 50
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 113206 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 113255 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 88914 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 88865
>gb|AF338762.1| Isoetes echinospora 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 731 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||| ||| ||||||||| |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatgcattactgcacttccacttggcacctat 142
>gb|AF338761.1| Isoetes lacustris 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 732 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||| ||| ||||||||| |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatgcattactgcacttccacttggcacctat 142
>gb|AF426187.1| Riella helicophylla 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 674 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 92 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 43
>gb|AF426183.1| Sphaerocarpos donnelli 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 777 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 202 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 153
>gb|L41595.1|YATCPITSA Cyathea cooperi chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 557 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||| | |||||| ||||||| Sbjct: 221 gttaggatgcctcagctgcatacattactgcacctccacttggcacctat 172
>gb|L41584.1|PIFCPITSA Pilularia globulifera chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 572 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||| | |||||| ||||||| Sbjct: 221 gttaggatgcctcagctgcatacattactgcacctccacttggcacctat 172
>gb|L41549.1|OSMCPITSA Osmunda regalis chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 530 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 217 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 168
>gb|L41599.1|DCKCPITSA Dicksonia antarctica chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 564 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||| | |||||| ||||||| Sbjct: 221 gttaggatgcctcagctgcatacattactgcacctccacttggcacctat 172
>gb|L41579.1|ADCCPITSA Adiantum capillus-veneris chloroplast 23S-5S internal transcribed spacer in inverted repeat (contains 4.5S rRNA) Length = 563 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 211 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 162
>gb|AF033637.1|AF033637 Andreaea rupestris 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 760 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||| ||| ||||||||| |||||| ||||||| Sbjct: 211 gttaggatgcctcagctgcatgcattactgcacttccacttggcacctat 162
>gb|AF033633.1|AF033633 Riccia fluitans 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 785 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 213 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 164
>gb|AF033631.1| Aneura pinguis 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 611 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||||||||||||| ||| || ||||||| Sbjct: 179 gttaggatgcctcagctacatacatcactgcacttccacctggcacctat 130
>gb|AF033629.1| Ptilidium pulcherrimum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence, chloroplast genes for chloroplast RNAs Length = 668 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 178 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 129
>gb|L41569.1|PNUCPITSA Psilotum nudum chloroplast 4.5S rRNA-containing 23S-5S internal transcribed spacer in inverted repeat Length = 478 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||| ||||| ||||||||| |||||| ||||||| Sbjct: 193 gttaggatgcctcagctgcgtacattactgcacttccacttggcacctat 144
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||| ||||| ||||||||| |||||| ||||||| Sbjct: 125439 gttaggatgcctcagctgcgtacattactgcacttccacttggcacctat 125488 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||| ||||| ||||||||| |||||| ||||||| Sbjct: 98008 gttaggatgcctcagctgcgtacattactgcacttccacttggcacctat 97959
>emb|X51978.1|CHOR45SR Osmunda regalis chloroploast 4.5S ribosomal RNA Length = 103 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 85 gttaggatgcctcagctgcatacattactgcacttccacttagcacctat 36
>gb|M13809.1|MPOCPRR4 M.polymorpha chloroplast 4.5 S ribosomal RNA, complete Length = 103 Score = 69.9 bits (35), Expect = 2e-09 Identities = 46/50 (92%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| Sbjct: 85 gttaggatgcctcagctacatacattactgcacttccacttggcacctat 36
>emb|AJ007508.1|GGN7508 Gnetum gnemon chloroplast psaC, ccsA, 4.5S rRNA, 5S rRNA, 16S rRNA (partial), 23S rRNA, and tRNA (Leu, Asn, Arg, Ala and Ile) genes Length = 9493 Score = 67.9 bits (34), Expect = 9e-09 Identities = 45/49 (91%) Strand = Plus / Plus Query: 3 ttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||||||||||||||| |||||| | |||||||||||||| Sbjct: 3577 ttaggatgcctcagctgcatacattactgcatctccacttgacacctat 3625
>gb|AF393576.1| Anthoceros punctatus small subunit ribosomal RNA (rrs) gene, partial sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc)) genes, complete sequence; large subunit ribosomal RNA (rrl) and 5S ribosomal RNA (rrf) genes, complete sequence; and tRNA-Arg (trnR(acg)) gene, partial sequence; chloroplast genes for chloroplast products Length = 8235 Score = 63.9 bits (32), Expect = 1e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct: 7587 gttagaatgcctcagctgcatacattactgcacttctacttggcacctatt 7537
>gb|AF426180.1| Anthoceros punctatus 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 819 Score = 63.9 bits (32), Expect = 1e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct: 197 gttagaatgcctcagctgcatacattactgcacttctacttggcacctatt 147
>dbj|AB087479.1| Anthoceros formosae chloroplast 4.5S rRNA, complete sequence Length = 103 Score = 63.9 bits (32), Expect = 1e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct: 85 gttagaatgcctcagctgcatacattactgcacttctacttggcacctatt 35
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 63.9 bits (32), Expect = 1e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct: 147553 gttagaatgcctcagctgcatacattactgcacttctacttggcacctatt 147603 Score = 63.9 bits (32), Expect = 1e-07 Identities = 46/51 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctatt 52 ||||| ||||||||||||||||||| ||||||||| ||||| |||||||| Sbjct: 121113 gttagaatgcctcagctgcatacattactgcacttctacttggcacctatt 121063
>gb|AF338760.1| Lycopodiella caroliniana 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 790 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338759.1| Lycopodium clavatum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 804 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338758.1| Lycopodium alpinum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 785 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338757.1| Lycopodium fastigiatum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 804 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338756.1| Lycopodium deuterodensum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 801 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338755.1| Lycopodium annotinum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 821 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 195 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 146
>gb|AF338754.1| Lycopodium scariosum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 813 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 195 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 146
>gb|AF338753.1| Lycopodium volubile 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 800 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338752.1| Lycopodium obscurum 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 806 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338751.1| Lycopodium casuarinoides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 799 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 193 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 144
>gb|AF338750.1| Lycopodiella inundata 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 790 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 189 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 140
>gb|AF338749.1| Lycopodiella alopecuroides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 798 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 189 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 140
>gb|AF338748.1| Lycopodiella cernua 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 784 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 189 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 140
>gb|AF338747.1| Lycopodiella lateralis 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 799 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 195 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 146
>gb|AF338746.1| Huperzia linifolia 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 789 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338745.1| Huperzia phlegmarioides 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 793 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338744.1| Huperzia verticillata 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 791 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 187 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 138
>gb|AF338743.1| Huperzia hippuridea 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 796 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338742.1| Huperzia hippuris 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 791 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338741.1| Huperzia campiana 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 791 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338740.1| Huperzia cumingii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 789 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338739.1| Huperzia billardieri 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 785 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338738.1| Huperzia wilsonii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 797 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338737.1| Huperzia selago 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 800 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 191 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 142
>gb|AF338736.1| Phylloglossum drummondii 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; chloroplast genes for chloroplast products Length = 812 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 194 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 145
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Plus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 143546 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 143595 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 ||||||||||||||||||||||||| |||| | || |||||| ||||||| Sbjct: 114916 gttaggatgcctcagctgcatacattactgtatttccacttggcacctat 114867
>gb|AF426186.1| Trichocolea tomentella 23S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; 5S rRNA-trnR intergenic spacer, partial sequence; chloroplast genes for chloroplast products Length = 595 Score = 61.9 bits (31), Expect = 6e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 2 gttaggatgcctcagctgcatacatcactgcacttncacttgacacctat 51 |||||||||||| |||| ||||||| ||||||||| |||||| ||||||| Sbjct: 160 gttaggatgcctgagctacatacattactgcacttccacttggcacctat 111 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 728,399 Number of Sequences: 3902068 Number of extensions: 728399 Number of successful extensions: 48911 Number of sequences better than 10.0: 297 Number of HSP's better than 10.0 without gapping: 304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47845 Number of HSP's gapped (non-prelim): 1039 length of query: 166 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 144 effective length of database: 17,147,199,772 effective search space: 2469196767168 effective search space used: 2469196767168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
