ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd24l15 |
|---|---|
| Clone Library Name | barley_pub |
>YCF24_PORPU (P51240) Hypothetical UPF0051 protein ycf24 (ORF487)| Length = 487 Score = 75.5 bits (184), Expect = 3e-14 Identities = 37/61 (60%), Positives = 44/61 (72%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 ASTSKI D FYF QRGI+ E+ V+ MI GFC+ VF LP EFA D L++LKLEG+V Sbjct: 427 ASTSKISEDQIFYFLQRGINLEESVSLMISGFCKDVFNELPMEFAVEADRLLSLKLEGTV 486 Query: 59 G 57 G Sbjct: 487 G 487
>YCF24_CYAPA (P48260) Hypothetical UPF0051 protein ycf24| Length = 486 Score = 74.3 bits (181), Expect = 8e-14 Identities = 36/61 (59%), Positives = 44/61 (72%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 ASTSKI + FYF QRGI+ E+ ++ +I GFCR VF +LP EFA D L+ LKLEGSV Sbjct: 426 ASTSKIGEEQIFYFLQRGINAEEAISLIISGFCREVFNNLPMEFALEADKLLGLKLEGSV 485 Query: 59 G 57 G Sbjct: 486 G 486
>YCF24_ODOSI (P49530) Hypothetical UPF0051 protein ycf24 (ORF486)| Length = 486 Score = 73.6 bits (179), Expect = 1e-13 Identities = 38/61 (62%), Positives = 41/61 (67%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 ASTSKI + FYF QRGI EK V MI GFC+ VF LP EFA D L+ LKLEGSV Sbjct: 426 ASTSKIGEEQIFYFLQRGIPIEKGVELMISGFCQEVFTELPLEFAAEADRLLTLKLEGSV 485 Query: 59 G 57 G Sbjct: 486 G 486
>YCF24_ANTSP (Q02857) Hypothetical UPF0051 protein in atpA 3'region (ORF 3)| (Fragment) Length = 297 Score = 72.4 bits (176), Expect = 3e-13 Identities = 35/61 (57%), Positives = 42/61 (68%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 ASTSKI + FYF QRGI+ E ++ MI GFC+ V LP EFA D L+NLKLEG+V Sbjct: 237 ASTSKIGEEQIFYFLQRGINLENAISLMISGFCKEVLNELPMEFAVEADRLLNLKLEGTV 296 Query: 59 G 57 G Sbjct: 297 G 297
>Y074_SYNY3 (Q55790) Hypothetical UPF0051 protein slr0074| Length = 480 Score = 72.0 bits (175), Expect = 4e-13 Identities = 34/61 (55%), Positives = 41/61 (67%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 ASTSKI D FYF QRGI E V+ ++ GFC+ V LP EFA D L++LKLEG+V Sbjct: 420 ASTSKIGEDQLFYFAQRGISEEDAVSMLVSGFCKDVLNELPMEFAAEADKLLSLKLEGTV 479 Query: 59 G 57 G Sbjct: 480 G 480
>YCF24_GUITH (O78473) Hypothetical UPF0051 protein ycf24| Length = 483 Score = 70.5 bits (171), Expect = 1e-12 Identities = 34/61 (55%), Positives = 43/61 (70%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 ASTSKI + FYF QRGI E+ ++ +I GFCR VF LP EFA D L+++KLEG+V Sbjct: 423 ASTSKIEEEQLFYFLQRGISVEQAISLLISGFCRDVFVKLPMEFAVEADKLLSVKLEGTV 482 Query: 59 G 57 G Sbjct: 483 G 483
>YCF24_GALSU (P35912) Hypothetical UPF0051 protein in atpA 3'region (ORF X)| (Fragment) Length = 221 Score = 69.7 bits (169), Expect = 2e-12 Identities = 33/61 (54%), Positives = 41/61 (67%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 AS SKI + FYF QRGI E+ ++ ++ GFC+ VF LP EFA D L+ LKLEGSV Sbjct: 161 ASISKINEEKLFYFMQRGISIEEAISLIVSGFCKEVFTELPLEFALEADKLLGLKLEGSV 220 Query: 59 G 57 G Sbjct: 221 G 221
>YCF24_CYACA (Q9TLX2) Hypothetical UPF0051 protein ycf24| Length = 483 Score = 62.8 bits (151), Expect = 2e-10 Identities = 29/61 (47%), Positives = 41/61 (67%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 A S+I + FYFQQRGI+ E+ + ++ GFC+ V LP EFA + L+N+KLEGS+ Sbjct: 423 AFVSRIGEEQIFYFQQRGINIEEALNMIVSGFCQDVCNKLPMEFALEANKLLNIKLEGSI 482 Query: 59 G 57 G Sbjct: 483 G 483
>SUFB_SHIFL (Q83KW2) Protein sufB| Length = 495 Score = 59.3 bits (142), Expect = 3e-09 Identities = 28/61 (45%), Positives = 37/61 (60%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 A+TS+I D FY QRGI E ++ ++ GFC+ VF LP EFA L+ + LE SV Sbjct: 435 ATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSV 494 Query: 59 G 57 G Sbjct: 495 G 495
>SUFB_ECOLI (P77522) Protein sufB| Length = 495 Score = 59.3 bits (142), Expect = 3e-09 Identities = 28/61 (45%), Positives = 37/61 (60%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 A+TS+I D FY QRGI E ++ ++ GFC+ VF LP EFA L+ + LE SV Sbjct: 435 ATTSRIGEDQLFYCLQRGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSV 494 Query: 59 G 57 G Sbjct: 495 G 495
>Y1496_MYCBO (P67126) Hypothetical UPF0051 protein Mb1496 [Contains:| Endonuclease PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)] Length = 846 Score = 48.5 bits (114), Expect = 5e-06 Identities = 20/61 (32%), Positives = 38/61 (62%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 A+ SK+ + FY RG+ ++ +A ++ GF + + LP E+A ++ L+ L++EG+V Sbjct: 786 ATVSKVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQMEGAV 845 Query: 59 G 57 G Sbjct: 846 G 846
>Y1461_MYCTU (P67125) Hypothetical UPF0051 protein Rv1461/MT1508 [Contains:| Endonuclease PI-MtuHIIP (EC 3.1.-.-) (Mtu pps1 intein)] Length = 846 Score = 48.5 bits (114), Expect = 5e-06 Identities = 20/61 (32%), Positives = 38/61 (62%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 A+ SK+ + FY RG+ ++ +A ++ GF + + LP E+A ++ L+ L++EG+V Sbjct: 786 ATVSKVSENQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQMEGAV 845 Query: 59 G 57 G Sbjct: 846 G 846
>Y593_MYCLE (Q49689) Hypothetical UPF0051 protein ML0593 [Contains: Mle pps1| intein] Length = 869 Score = 48.1 bits (113), Expect = 6e-06 Identities = 20/61 (32%), Positives = 38/61 (62%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEGSV 60 A+ SK+ + FY RG+ ++ +A ++ GF + + LP E+A ++ L+ L++EG+V Sbjct: 809 ATVSKVSENQLFYLMSRGLAEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQMEGAV 868 Query: 59 G 57 G Sbjct: 869 G 869
>Y1385_PYRHO (O50093) Hypothetical UPF0051 protein PH1385| Length = 446 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXVDALMNLKLEG 66 A+ KI + FY RG+ EK ++ GF + + +P EF + ++ L + G Sbjct: 387 AAIGKIKEEELFYLMSRGLSEEKATQLIVKGFVEPMLKDIPIEFVVEIKKIIELAVSG 444
>Y2365_ARCFU (O30305) Hypothetical UPF0051 protein AF2365| Length = 369 Score = 31.6 bits (70), Expect = 0.57 Identities = 12/48 (25%), Positives = 24/48 (50%) Frame = -3 Query: 239 ASTSKIXXDXXFYFQQRGIDHEKXVAAMIGGFCRXVFEHLPYEFAQXV 96 A+ KI + FY RG+ ++ ++A++ GF + LP + + Sbjct: 310 AAIGKIAEEGIFYLMSRGLSRDEAISAIVRGFMEIEIKGLPEALQEAI 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,286,872 Number of Sequences: 219361 Number of extensions: 505846 Number of successful extensions: 990 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 985 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 990 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
