ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25a13 |
|---|---|
| Clone Library Name | barley_pub |
>YCF2_ANTFO (Q859W7) Protein ycf2| Length = 2392 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 107 REKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMXYKIRKTN 238 REK T+ S+N E + Q AQ+ T ER+ +IR+ N Sbjct: 2108 REKEQTFSVSENSREIFHSSQVAQYKTKEELPYERILSRIRRRN 2151
>CYB_PLAFA (Q02768) Cytochrome b| Length = 376 Score = 30.4 bits (67), Expect = 1.1 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 31/121 (25%) Frame = -3 Query: 344 MRSINHMCLFLPLS-------------S*LVGTIHCWSSLCEW-----------LPVAFG 237 +R +N+ ++LPLS + VG + W + W +PVA Sbjct: 94 LRGLNYSYMYLPLSWISGLILFMIFIVTAFVGYVLPWGQMSYWGATVITNLLSSIPVAVI 153 Query: 236 WFCEFY-------RXFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 78 W C Y + FF L+ + +C+VF+ +F++H +G Sbjct: 154 WICGGYTVSDPTIKRFFVLHF-----------------ILPFIGLCIVFIHIFFLHLHGS 196 Query: 77 S 75 + Sbjct: 197 T 197
>CSTA_ECOLI (P15078) Carbon starvation protein A| Length = 701 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -3 Query: 149 LACFVIVHMCMVFLGLFYVHAYGQSPWVCFGRLFTLSFLM*HGQLYVTY 3 +ACF+I+ + + L + V A SPW + FT+ + G +Y+ Y Sbjct: 165 VACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMG-IYLRY 212
>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1| Length = 396 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +2 Query: 71 RGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMXYKIRKTNQK 244 R H+H R+T+ E+P + GQ Q + T+ LQA + ER Y R+ + Sbjct: 142 RHRGHSHQRRTSNERPGS-GQGQGRDRDTQNLQAQE--------EEREFYNARRREHR 190
>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) (Beta-T) Length = 483 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -3 Query: 296 LVGTIHCWSSLCEWLPVAFGWFCEFYRXFFRLYMD*VCCAVLLARS*YALACFVIVHMCM 117 ++ T+ S+L +LP+ W+ + + Y D CC + R+ YA+A +I Sbjct: 161 IICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-YAIASSIISFYIP 219 Query: 116 VFLGLF-YVHAYGQS 75 + + +F Y+ Y ++ Sbjct: 220 LLIMIFVYLRVYREA 234
>ADRB1_PIG (Q28998) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 468 Score = 29.6 bits (65), Expect = 1.9 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Frame = -3 Query: 296 LVGTIHCWSSLCEWLPVAFGWFCEFYRXFFRLYMD*VCCAVLLARS*YALACFVI---VH 126 LV T+ S+L +LP+ W+ + R Y D CC + R+ YA+A V+ V Sbjct: 177 LVCTVWAISALVSFLPILMHWWRDKGAEARRCYNDPKCCDFVTNRA-YAIASSVVSFYVP 235 Query: 125 MCM---VFLGLF 99 +C+ V+L +F Sbjct: 236 LCIMAFVYLRVF 247
>IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2| Length = 908 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +2 Query: 59 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMXYKIRKTN 238 + I RGT+ T R R K + +N+ R+ Q+AQH P E++ Y + + Sbjct: 276 REIKRGTSSTTARGRGRRKNQDEREIKNRKNGLRSSQSAQHKFEKPV--EKIVYDVEISE 333 Query: 239 Q 241 Q Sbjct: 334 Q 334
>CYB_PLAVS (O63696) Cytochrome b| Length = 382 Score = 29.3 bits (64), Expect = 2.5 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 31/121 (25%) Frame = -3 Query: 344 MRSINHMCLFLPLS-------------S*LVGTIHCWSSLCEW-----------LPVAFG 237 +R +N+ L+LPLS + +G + W + W +PV Sbjct: 94 LRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVI 153 Query: 236 WFCEFY-------RXFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 78 W C Y + FF L+ V +C+VF+ +F++H +G Sbjct: 154 WLCGGYTVSDPTIKRFFVLHF-----------------ILPFVALCIVFIHIFFLHLHGS 196 Query: 77 S 75 + Sbjct: 197 T 197
>ZN75A_HUMAN (Q96N20) Zinc finger protein 75A| Length = 296 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +2 Query: 83 HTHVRKTNREKPYT-------YGQSQNKLEHTRTLQAAQHSTLSPC 199 HTH R EKP+T + Q+ + ++H RT Q T S C Sbjct: 233 HTHQRTHTGEKPFTCHECGKKFSQNSHLIKHRRTHTGEQPYTCSIC 278
>Y663_GLOVI (Q7NMV2) UPF0078 membrane protein gll0663| Length = 205 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 295 WLARSIAGHLCANGYLWLLVGFANFIGHSF 206 WLAR++AG A ++ L G A +GHS+ Sbjct: 72 WLARTLAGGEDAGAWIVLGAGLAAIVGHSW 101
>T231D_BACTF (Q05501) Transposase for insertion sequence element IS231D| Length = 478 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +1 Query: 22 PCYIRNDSVNNLPKHTQGDCPYACT*NKPRKTIHI 126 P Y RN +V P++TQ D Y KP +T I Sbjct: 234 PKYFRNGTVKKQPQYTQVDLEYLMNTLKPGQTYEI 268
>SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 701 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 87 RMYVKQTEKNHTHMDNHKTS*SILGPCKQHSTAHSVHVQT 206 + Y + EKNH +D K IL K+ T H + V+T Sbjct: 210 KAYFEVLEKNHVILDPKKREAKILQEIKELETKHHIIVET 249
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 28.1 bits (61), Expect = 5.5 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 18/103 (17%) Frame = +2 Query: 62 NIPRGTAHTHVRKTNREKPY-----------TYGQSQNKLEHTRTL-------QAAQHST 187 N+P A+T V T R P + Q L ++RT QAA+ Sbjct: 1514 NLPESVAYTCVNCTERHPPEWRLALEKELQASLKQVLTALLNSRTTSHLLRYRQAAKPPD 1573 Query: 188 LSPCTNERMXYKIRKTNQKPQVAIRTKMTSNGSCQPIMMRGVK 316 L+P T E + R + + P + T+++ QP+ + GVK Sbjct: 1574 LNPETEESI--PSRSSPEGPDPPVLTEVSKQDEQQPLDLEGVK 1614
>CYB_PLACH (O99256) Cytochrome b| Length = 376 Score = 27.7 bits (60), Expect = 7.2 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 31/121 (25%) Frame = -3 Query: 344 MRSINHMCLFLPLS-------------S*LVGTIHCWSSLCEW-----------LPVAFG 237 +R +N+ L+LPLS + +G + W + W +P Sbjct: 94 LRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIPALVI 153 Query: 236 WFCEFY-------RXFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLFYVHAYGQ 78 W C Y + FF L+ V +C+VF+ +F++H +G Sbjct: 154 WLCGGYTVSDPTIKRFFVLHF-----------------ILPFVALCIVFIHIFFLHLHGS 196 Query: 77 S 75 + Sbjct: 197 T 197
>SPIKE_CVBV (P25194) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -1 Query: 253 YLWLLVGFAN---FIGHSFVCTWTECAVLC 173 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBQ (P25193) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -1 Query: 253 YLWLLVGFAN---FIGHSFVCTWTECAVLC 173 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBM (P15777) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -1 Query: 253 YLWLLVGFAN---FIGHSFVCTWTECAVLC 173 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBL9 (P25191) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -1 Query: 253 YLWLLVGFAN---FIGHSFVCTWTECAVLC 173 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBF (P25190) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -1 Query: 253 YLWLLVGFAN---FIGHSFVCTWTECAVLC 173 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>TAF2_DROME (Q24325) Transcription initiation factor TFIID subunit 2| (Transcription initiation factor TFIID 150 kDa subunit) (TAFII-150) (TAFII150) Length = 1221 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%) Frame = -1 Query: 319 CFYPSHH---DWLARSIAGHLC 263 CF SHH WLA+ IA +LC Sbjct: 349 CFITSHHWSDTWLAKGIAEYLC 370
>ILVD_RALSO (Q8XWR1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Frame = +2 Query: 59 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTN------ERMXY 220 Q+I +G A R NR Y G + + A HST++PC + + Sbjct: 8 QHITQGVA----RSPNRSMYYALGYKKEDFSNPMIGVANGHSTITPCNSGLQKLADAAVA 63 Query: 221 KIRKTNQKPQV 253 ++ +N PQ+ Sbjct: 64 AVKASNANPQI 74
>Y4JN_RHISN (P55514) Hypothetical 16.3 kDa protein y4jN| Length = 146 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -1 Query: 292 LARSIAGHLCANGYL--WLLVGFANFIGHSFVCTWTECAVLCCLQGPSM 152 L+ S + H+ A +L W L GF I F+ +C + L GP++ Sbjct: 32 LSSSRSAHVAAADHLIGWFLAGFRQRIHKPFMLRTVQCDRIYVLAGPNL 80
>BCL6_HUMAN (P41182) B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51)| (LAZ-3 protein) (BCL-5) (Zinc finger and BTB domain-containing protein 27) Length = 706 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/59 (23%), Positives = 25/59 (42%) Frame = +2 Query: 77 TAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMXYKIRKTNQKPQV 253 T +H+R EKPY + H L+ TN ++ Y++ T+ P++ Sbjct: 644 TLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPEL 702
>ADRB1_SHEEP (Q28927) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) (BETA1AR) Length = 467 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -3 Query: 296 LVGTIHCWSSLCEWLPVAFGWFCEFYRXFFRLYMD*VCCAVLLARS*YALACFVI---VH 126 LV T+ S+L +LP+ W+ + R Y D CC ++ YA+ V+ V Sbjct: 178 LVCTVWAISALVSFLPIFMQWWGDKDAKASRCYNDPECCDFIINEG-YAITSSVVSFYVP 236 Query: 125 MCM---VFLGLF 99 +C+ V+L +F Sbjct: 237 LCIMAFVYLRVF 248
>ADRB1_BOVIN (Q9TT96) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 467 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = -3 Query: 296 LVGTIHCWSSLCEWLPVAFGWFCEFYRXFFRLYMD*VCCAVLLARS*YALACFVI---VH 126 LV T+ S+L +LP+ W+ + R Y D CC ++ YA+ V+ V Sbjct: 178 LVCTVWAISALVSFLPIFMQWWGDKDAKASRCYNDPECCDFIINEG-YAITSSVVSFYVP 236 Query: 125 MCM---VFLGLF 99 +C+ V+L +F Sbjct: 237 LCIMAFVYLRVF 248
>NUCM_NEPOL (Q9TC96) NADH-ubiquinone oxidoreductase 49 kDa subunit (EC 1.6.5.3)| (EC 1.6.99.3) (NADH dehydrogenase subunit 7) Length = 398 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +1 Query: 22 PCYIRNDSVNNLPKHTQGDC--PYACT*NKPRKTIHI 126 P + N + ++P TQGDC Y C + R++IHI Sbjct: 242 PYDVYNRMIFDVPVGTQGDCYDRYLCRVEEMRQSIHI 278 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,844,967 Number of Sequences: 219361 Number of extensions: 1160999 Number of successful extensions: 2946 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2945 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
