>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 177 HWQTSLPASSGELXPTW*ICQPCHSPADAPLGVPRGC 287
           H Q SL    G L P W   Q CHS     LG P+ C
Sbjct: 174 HLQASLSQRLGSLDPGW--LQRCHSEVPDFLGAPKAC 208

>BRR2_YEAST (P32639) Pre-mRNA-splicing helicase BRR2 (EC 3.6.1.-) (Protein|
            Snu246)
          Length = 2163

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 98   DWYKFTYFSFESHFNPS*YS-STTTLGALANFLACFVRRAXADLV 229
            DW+ ++YF    H NPS Y    T+   ++ FL+  V     DLV
Sbjct: 1771 DWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCLNDLV 1815

>CT078_HUMAN (Q9BR46) Hypothetical protein C20orf78|
          Length = 151

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 126 LNLILTRRSTHQLLPWAHWQ 185
           L+L+LTR+   Q L W+HWQ
Sbjct: 71  LDLLLTRKKRSQGLHWSHWQ 90

>GLMU_RALSO (Q8Y304) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 321 SFKVLEGVFGMDNLVGLQEVHLQVSDKAGKFTRSAXARLTK-QARKFANAPRVVVDEYYD 145
           +   L G  G D+L G+  VHL      G+  R A  R+T+   +K AN  ++ + E   
Sbjct: 108 TLNALVGAAGQDHL-GVLTVHLDDPTGYGRIVRDATGRITRIVEQKDANETQLAIHEVNT 166

Query: 144 GL 139
           G+
Sbjct: 167 GI 168

>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)|
          Length = 511

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/75 (21%), Positives = 37/75 (49%)
 Frame = +2

Query: 179 LANFLACFVRRAXADLVNLPALSLTCRCTSWSPTRLSMPKTPSSTLKLIXSRSTTGMAFS 358
           L+N+L+  ++    +L  L    +  R  + S + +S+ K+P+ST++++ +      A  
Sbjct: 272 LSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALK 331

Query: 359 EKISRGRTGVAKRSS 403
            K    + G+   +S
Sbjct: 332 TKHDTPKYGLLYHAS 346

>MPP5_PONPY (Q5RDQ2) MAGUK p55 subfamily member 5|
          Length = 675

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 283 VVHAEDTFQHLETHLKPLHHRHG 351
           + +A+D  Q ++T LKP+HH+ G
Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205

>MPP5_HUMAN (Q8N3R9) MAGUK p55 subfamily member 5|
          Length = 675

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 283 VVHAEDTFQHLETHLKPLHHRHG 351
           + +A+D  Q ++T LKP+HH+ G
Sbjct: 183 ISNAQDLAQEVQTVLKPVHHKEG 205

>MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic|
           arrest deficient-like protein 1) (MAD1-like 1)
          Length = 717

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 235 ASLVTHLQMHLLESHEVVHAEDTFQHLETHLKPLHHRHGLLREDQQG-QDRCGEAEQLQ 408
           A++V +++  LL    +       +   THL+ +   +GLL E+ +G Q + G  E++Q
Sbjct: 239 AAVVKNMKSELLRLPRMERELKRLREENTHLREMKETNGLLTEELEGLQRKLGRQEKMQ 297

>V192_BPT7 (P03789) Gene 19.2 protein|
          Length = 85

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 248 LTCRCTSWSPTRLSMPKTPSSTLKLIXSRST 340
           +TC   SW+  RL++  +   TL L+  RST
Sbjct: 54  MTCASVSWNTVRLALRYSSCLTLTLVMPRST 84

>WDR43_HUMAN (Q15061) WD-repeat protein 43|
          Length = 720

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 242 LSLTCRCTSWSPTRLSMPKTP 304
           LS TC C +W+P RL   ++P
Sbjct: 101 LSGTCTCLAWAPARLQAKESP 121

>BGAL_STAXY (O33815) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 994

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 26  YKQNEXAG*TSNKYSSMNTXLI*XDWYKFTYF-SFESHFNPS*YSSTTTL 172
           Y+Q E       +Y++ N  L+  +WY F YF S E++ N S    + TL
Sbjct: 27  YQQGEADYHFETRYNTRNATLLNGEWY-FQYFESLEAYLNHSNKQESKTL 75

>VCLA_PEA (P02855) Provicilin (Type A) (Fragment)|
          Length = 275

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 313 LETHLKPLHHRHGLLREDQQGQDR 384
           LE H K  HHR GL  + QQ Q++
Sbjct: 10  LEEHEKETHHRRGLRDKRQQSQEK 33

>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding|
            cassette transporter 1) (ATP-binding cassette 1) (ABC-1)
          Length = 2261

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +2

Query: 197  CFVRRAXADLVNLPALSLTCRCTSWSPTRLSMP-----KTPSSTLKLIXS 331
            CF +++     NLP L+L      WS T L  P     K PS+   ++ S
Sbjct: 1723 CFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTS 1772

>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding|
            cassette transporter 1) (ATP-binding cassette 1) (ABC-1)
            (Cholesterol efflux regulatory protein)
          Length = 2261

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +2

Query: 197  CFVRRAXADLVNLPALSLTCRCTSWSPTRLSMP-----KTPSSTLKLIXS 331
            CF +++     NLP L+L      WS T L  P     K PS+   ++ S
Sbjct: 1723 CFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTS 1772

>YFCM_ECOLI (P76938) Hypothetical protein yfcM|
          Length = 182

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 309 LEGVFGMDNLVGLQEVHLQVSDKAGKFTRSAXARLTKQARKFANAPRVVVDEY 151
           LEG F  D +V  + VH QV D          AR  K  + + + P +  +++
Sbjct: 123 LEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKALQNYYHTPELTAEQF 175

>CADH1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)|
           (Cadherin-1) (CD324 antigen) [Contains: E-Cad/CTF1;
           E-Cad/CTF2; E-Cad/CTF3]
          Length = 886

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = +1

Query: 250 HLQMHLLESHEVVHAED-TFQHLETH--LKPL---HHRH 348
           HL++H LE+  +VHA D +++ L T   LK L   HHRH
Sbjct: 92  HLKLHKLETSFLVHAWDSSYRKLSTKVTLKSLGHHHHRH 130

>TNNI_PONLE (P05547) Troponin I (TnI)|
          Length = 201

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 273 LQEVHLQVSDKAGKFTRSAXARLTKQARKFA 181
           + E+++QV+D  GKF +    +++K   KFA
Sbjct: 126 INELNIQVNDLRGKFIKPTLKKVSKYENKFA 156

>SLIK2_MOUSE (Q810C0) SLIT and NTRK-like protein 2 precursor|
          Length = 846

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 220 RPGEFASLVTHLQMHLLESHEVVHAEDTFQHLET 321
           RPG F+ L T  ++HL  +   V  EDTF  LE+
Sbjct: 102 RPGAFSGLKTLKRLHLNNNKLEVLREDTFLGLES 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,402,199
Number of Sequences: 219361
Number of extensions: 974846
Number of successful extensions: 2885
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)