>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 5e-19
 Identities = 89/99 (89%), Gaps = 3/99 (3%)
 Strand = Plus / Minus

                                                                            
Query: 234      ctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtgac 291
                |||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |||
Sbjct: 38047466 ctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccgac 38047407

                                                       
Query: 292      ccaagacaataaaa-atatgcctgggtccattggggtta 329
                |||||||||||||| ||||   |||||||||||||||||
Sbjct: 38047406 ccaagacaataaaatatatctatgggtccattggggtta 38047368



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 135      agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 189
                |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 38047596 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 38047542



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/114 (85%), Gaps = 4/114 (3%)
 Strand = Plus / Minus

                                                                            
Query: 358      tccaaagccttctttggagtcccatcacccgtgttacaaaatggcaggaggtagtgccaa 417
                ||||||||||||||||| || |||||||   ||||| ||| || ||||||||||  | ||
Sbjct: 38047335 tccaaagccttctttggggtaccatcacta-tgttagaaa-tgacaggaggtagcactaa 38047278

                                                                      
Query: 418      gtgccaaaaactaacattagcactc--ctgaacctgtctctgatgaggggcaca 469
                ||||||||||| |||||||||||||  ||||||||||||||||  |||||||||
Sbjct: 38047277 gtgccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcaca 38047224

>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  103 bits (52), Expect = 5e-19
 Identities = 89/99 (89%), Gaps = 3/99 (3%)
 Strand = Plus / Minus

                                                                          
Query: 234    ctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtgac 291
              |||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |||
Sbjct: 128410 ctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccgac 128351

                                                     
Query: 292    ccaagacaataaaa-atatgcctgggtccattggggtta 329
              |||||||||||||| ||||   |||||||||||||||||
Sbjct: 128350 ccaagacaataaaatatatctatgggtccattggggtta 128312



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                     
Query: 135    agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 189
              |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 128540 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 128486



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/114 (85%), Gaps = 4/114 (3%)
 Strand = Plus / Minus

                                                                          
Query: 358    tccaaagccttctttggagtcccatcacccgtgttacaaaatggcaggaggtagtgccaa 417
              ||||||||||||||||| || |||||||   ||||| ||| || ||||||||||  | ||
Sbjct: 128279 tccaaagccttctttggggtaccatcacta-tgttagaaa-tgacaggaggtagcactaa 128222

                                                                    
Query: 418    gtgccaaaaactaacattagcactc--ctgaacctgtctctgatgaggggcaca 469
              ||||||||||| |||||||||||||  ||||||||||||||||  |||||||||
Sbjct: 128221 gtgccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcaca 128168

>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  103 bits (52), Expect = 5e-19
 Identities = 89/99 (89%), Gaps = 3/99 (3%)
 Strand = Plus / Minus

                                                                         
Query: 234   ctggacctaaccatggtaatgacattggggaag--atgaacatctagatgagtgggtgac 291
             |||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||  |||
Sbjct: 15500 ctggacctaaccatggtagtgacattggggaagcaatggacatctagatgagtggccgac 15441

                                                    
Query: 292   ccaagacaataaaa-atatgcctgggtccattggggtta 329
             |||||||||||||| ||||   |||||||||||||||||
Sbjct: 15440 ccaagacaataaaatatatctatgggtccattggggtta 15402



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                    
Query: 135   agtactactttattattacaatcactgtgaccgataatattacattaaaaagcat 189
             |||||||||||||||||||||||||  || ||||||||| |||||||||||||||
Sbjct: 15630 agtactactttattattacaatcaccatgtccgataatagtacattaaaaagcat 15576



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/114 (85%), Gaps = 4/114 (3%)
 Strand = Plus / Minus

                                                                         
Query: 358   tccaaagccttctttggagtcccatcacccgtgttacaaaatggcaggaggtagtgccaa 417
             ||||||||||||||||| || |||||||   ||||| ||| || ||||||||||  | ||
Sbjct: 15369 tccaaagccttctttggggtaccatcacta-tgttagaaa-tgacaggaggtagcactaa 15312

                                                                   
Query: 418   gtgccaaaaactaacattagcactc--ctgaacctgtctctgatgaggggcaca 469
             ||||||||||| |||||||||||||  ||||||||||||||||  |||||||||
Sbjct: 15311 gtgccaaaaacaaacattagcactcctctgaacctgtctctgacaaggggcaca 15258

>gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, complete sequence
          Length = 143480

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 246   atggtaatgacattggggaaga 267
             ||||||||||||||||||||||
Sbjct: 55963 atggtaatgacattggggaaga 55942

>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
             sequence
          Length = 149431

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 246   atggtaatgacattggggaaga 267
             ||||||||||||||||||||||
Sbjct: 30839 atggtaatgacattggggaaga 30860

>gb|BC056810.1| Danio rerio zgc:63733, mRNA (cDNA clone MGC:63733 IMAGE:2639664),
           complete cds
          Length = 2648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 156 tcactgtgaccgataatatta 176
           |||||||||||||||||||||
Sbjct: 581 tcactgtgaccgataatatta 601

>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 426   aactaacattagcactcctga 446
             |||||||||||||||||||||
Sbjct: 97530 aactaacattagcactcctga 97510

>ref|NM_200619.1| Danio rerio zgc:63733 (zgc:63733), mRNA
          Length = 2648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 156 tcactgtgaccgataatatta 176
           |||||||||||||||||||||
Sbjct: 581 tcactgtgaccgataatatta 601

>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     ctgataaaacagtaaagagtt 115
              |||||||||||||||||||||
Sbjct: 715595 ctgataaaacagtaaagagtt 715575

>emb|CR381643.18| Zebrafish DNA sequence from clone DKEY-39N1 in linkage group 8,
             complete sequence
          Length = 217745

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   ataatattacattaaaaagca 188
             |||||||||||||||||||||
Sbjct: 10804 ataatattacattaaaaagca 10824

>gb|AC145979.4| Gallus gallus BAC clone CH261-10P22 from chromosome unknown, complete
             sequence
          Length = 243329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 48    agagaaggtactgattatagattga 72
             ||||||||||||||| |||||||||
Sbjct: 21680 agagaaggtactgatcatagattga 21656

>gb|AC155264.2| Mus musculus BAC clone RP23-281B4 from chromosome 16, complete sequence
          Length = 199531

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    acagaatatttagctagatc 91
             ||||||||||||||||||||
Sbjct: 90044 acagaatatttagctagatc 90063

>gb|AE002123.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 24 of 59 of the
             complete genome
          Length = 14499

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   ctactttattattacaatca 158
             ||||||||||||||||||||
Sbjct: 11613 ctactttattattacaatca 11594

>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 395     aaaatggcaggaggtagtgc 414
               ||||||||||||||||||||
Sbjct: 5927164 aaaatggcaggaggtagtgc 5927183



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     aaaatggcaggaggtagtgc 414
               ||||||||||||||||||||
Sbjct: 3835319 aaaatggcaggaggtagtgc 3835300

>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence
          Length = 104859

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   cccaagacaataaaaatatgcctg 314
             ||||||||||||||||||| ||||
Sbjct: 50036 cccaagacaataaaaatatacctg 50059

>gb|AC104331.2| Homo sapiens chromosome 3 clone RP11-543A18, complete sequence
          Length = 201049

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    tttattattacaatcactgt 162
              ||||||||||||||||||||
Sbjct: 111113 tttattattacaatcactgt 111094

>emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chromosome X, complete
              sequence
          Length = 208959

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    cacagcagtgttttggtatc 357
              ||||||||||||||||||||
Sbjct: 167958 cacagcagtgttttggtatc 167977

>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete
              sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     tagattgacagaatatttag 84
              ||||||||||||||||||||
Sbjct: 177259 tagattgacagaatatttag 177278


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,271,577
Number of Sequences: 3902068
Number of extensions: 4271577
Number of successful extensions: 79856
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79739
Number of HSP's gapped (non-prelim): 108
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)