ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23p11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA 208 2e-50
2dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 2e-50
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
4dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 2e-07
6gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 66 2e-07
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
8dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
9dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
10gb|AY108127.1| Zea mays PCO088339 mRNA sequence 58 4e-05
11ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRC... 48 0.040
12gb|AY083934.1| Gallus gallus breast cancer susceptibility protei... 48 0.040
13dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BR... 48 0.040
14gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 44 0.62
15gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 44 0.62
16gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 44 0.62
17gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, comp... 44 0.62
18gb|CP000001.1| Bacillus cereus E33L, complete genome 44 0.62
19emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19... 44 0.62
20gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromo... 44 0.62
21gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chrom... 44 0.62
22gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 44 0.62
23ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 ... 42 2.5
24gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome... 42 2.5
25gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4... 42 2.5
26gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 geno... 42 2.5
27gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complet... 42 2.5
28emb|Y11171.1|BC542A B.cereus bc542a gene 42 2.5
29dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 42 2.5
30gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 2.5
31gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome ... 40 9.7
32gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosom... 40 9.7
33gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 40 9.7
34gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, co... 40 9.7
35ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin ... 40 9.7
36gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosom... 40 9.7
37gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome... 40 9.7
38emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete s... 40 9.7
39gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complet... 40 9.7
40gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, comple... 40 9.7
41emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chr... 40 9.7
42gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence 40 9.7
43emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P... 40 9.7
44ref|XM_964459.1| PREDICTED: Tribolium castaneum similar to CG152... 40 9.7
45gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 9.7
46gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1... 40 9.7
47dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct i... 40 9.7
48gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E... 40 9.7
49ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase f... 40 9.7
50gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 9.7
51gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, comple... 40 9.7
52gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromoso... 40 9.7
53gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosom... 40 9.7
54gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14... 40 9.7
55gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, c... 40 9.7
56gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24... 40 9.7
57gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complet... 40 9.7
58emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in... 40 9.7
59emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on ch... 40 9.7
60dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 9.7
61gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosom... 40 9.7
62gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, comple... 40 9.7
63emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chrom... 40 9.7
64emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chr... 40 9.7
65emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4... 40 9.7 
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3250

 Score =  208 bits (105), Expect = 2e-50
 Identities = 346/425 (81%), Gaps = 6/425 (1%)
 Strand = Plus / Minus

                                                                        
Query: 284  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 343
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                                                        
Query: 344  ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 403
              | |||||||||||||| |||||||||||||| ||||||  |||   |||||  |||  
Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796

                                                                        
Query: 404  ttgaccaagagactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 463
            |||| |||||||||||| ||| || ||||||||||||||||||||||||||  ||| | |
Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736

                                                                        
Query: 464  tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 523
             | ||||   ||||||||||||||||| |||  |||||| |  ||||||| |||||| ||
Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679

                                                                        
Query: 524  ccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacccgtttcaga 583
            |||||| ||||| |||||||||||  | ||||| ||||| ||||||||||| | |||| |
Sbjct: 2678 ccatgggcaataattgttgtgatgactaattgggtcaaattctggaagacctgcttcata 2619

                                                                        
Query: 584  atcattttccccattcgttgctccaagatcatttcctgggtcatactcgtccttcgtcag 643
             |||||| |||| |   ||||| ||||||||| |||||| ||||| ||||| || |   |
Sbjct: 2618 gtcatttcccccgt---ttgctgcaagatcatctcctggatcatagtcgtcatttgctgg 2562

                                                                        
Query: 644  cattttaccagtctgggtcacttcatctttagataaatcaatgccagaataaactcttgc 703
            || |||| || |||| ||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 2561 caatttagcaatctgtgtcacctcatctttagacagatcaatgccagaataaactctagc 2502

                 
Query: 704  attgc 708
            |||||
Sbjct: 2501 attgc 2497
to top
>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full
            insert sequence
          Length = 3250

 Score =  208 bits (105), Expect = 2e-50
 Identities = 346/425 (81%), Gaps = 6/425 (1%)
 Strand = Plus / Minus

                                                                        
Query: 284  gaggcgcttcagttagcacttgctgtgttttggccttttcagcagcttgtggctaggtgc 343
            |||| |||||| ||| || ||||||||  | | |||||||| ||||||| ||||||| ||
Sbjct: 2915 gaggagcttcaattaacatttgctgtggctagcccttttcaacagcttgcggctaggcgc 2856

                                                                        
Query: 344  ggcgtggtcatccttatatagtgatgccgcagaatcagacttcatggcttgatactggtt 403
              | |||||||||||||| |||||||||||||| ||||||  |||   |||||  |||  
Sbjct: 2855 cacatggtcatccttatacagtgatgccgcagagtcagacggcataatttgattttgggc 2796

                                                                        
Query: 404  ttgaccaagagactggacagtctcaagtgcatctactgtaagctgccagccacaaaatgc 463
            |||| |||||||||||| ||| || ||||||||||||||||||||||||||  ||| | |
Sbjct: 2795 ttgagcaagagactggatagtttccagtgcatctactgtaagctgccagccggaaagtcc 2736

                                                                        
Query: 464  tgcactatttgtgctggaaccagtattcatagtgcaagcagtggcaacatatccattaac 523
             | ||||   ||||||||||||||||| |||  |||||| |  ||||||| |||||| ||
Sbjct: 2735 ggtacta---gtgctggaaccagtattgatacagcaagccgcagcaacatgtccatttac 2679

                                                                        
Query: 524  ccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacccgtttcaga 583
            |||||| ||||| |||||||||||  | ||||| ||||| ||||||||||| | |||| |
Sbjct: 2678 ccatgggcaataattgttgtgatgactaattgggtcaaattctggaagacctgcttcata 2619

                                                                        
Query: 584  atcattttccccattcgttgctccaagatcatttcctgggtcatactcgtccttcgtcag 643
             |||||| |||| |   ||||| ||||||||| |||||| ||||| ||||| || |   |
Sbjct: 2618 gtcatttcccccgt---ttgctgcaagatcatctcctggatcatagtcgtcatttgctgg 2562

                                                                        
Query: 644  cattttaccagtctgggtcacttcatctttagataaatcaatgccagaataaactcttgc 703
            || |||| || |||| ||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct: 2561 caatttagcaatctgtgtcacctcatctttagacagatcaatgccagaataaactctagc 2502

                 
Query: 704  attgc 708
            |||||
Sbjct: 2501 attgc 2497
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  125 bits (63), Expect = 2e-25
 Identities = 197/241 (81%), Gaps = 3/241 (1%)
 Strand = Plus / Plus

                                                                           
Query: 355     ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaagag 414
               ||||||| |||||||||||||| ||||||  |||   |||||  |||  |||| ||||||
Sbjct: 2667181 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 2667240

                                                                           
Query: 415     actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 474
               |||||| ||| || ||||||||||||||||||||||||||  ||| | | | ||||   |
Sbjct: 2667241 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 2667297

                                                                           
Query: 475     tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 534
               |||||||||||||||| |||  |||||| |  ||||||| |||||| |||||||| ||||
Sbjct: 2667298 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 2667357

                                                                           
Query: 535     agttgttgtgatgcttgattggatcaaactctggaagacccgtttcagaatcattttccc 594
               | |||||||||||  | ||||| ||||| ||||||||||| | |||| | |||||| |||
Sbjct: 2667358 aattgttgtgatgactaattgggtcaaattctggaagacctgcttcatagtcatttcccc 2667417

                
Query: 595     c 595
               |
Sbjct: 2667418 c 2667418



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Plus

                                                                           
Query: 606     ccaagatcatttcctgggtcatactcgtccttcgtcagcattttaccagtctgggtcact 665
               |||||||||| |||||| ||||| ||||| || |   ||| |||| || |||| ||||| 
Sbjct: 2667748 ccaagatcatctcctggatcatagtcgtcatttgctggcaatttagcaatctgtgtcacc 2667807

                                                          
Query: 666     tcatctttagataaatcaatgccagaataaactcttgcattgc 708
               ||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 2667808 tcatctttagacagatcaatgccagaataaactctagcattgc 2667850
to top
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1027_G06
          Length = 121885

 Score =  125 bits (63), Expect = 2e-25
 Identities = 197/241 (81%), Gaps = 3/241 (1%)
 Strand = Plus / Plus

                                                                         
Query: 355   ccttatatagtgatgccgcagaatcagacttcatggcttgatactggttttgaccaagag 414
             ||||||| |||||||||||||| ||||||  |||   |||||  |||  |||| ||||||
Sbjct: 92899 ccttatacagtgatgccgcagagtcagacggcataatttgattttgggcttgagcaagag 92958

                                                                         
Query: 415   actggacagtctcaagtgcatctactgtaagctgccagccacaaaatgctgcactatttg 474
             |||||| ||| || ||||||||||||||||||||||||||  ||| | | | ||||   |
Sbjct: 92959 actggatagtttccagtgcatctactgtaagctgccagccggaaagtccggtacta---g 93015

                                                                         
Query: 475   tgctggaaccagtattcatagtgcaagcagtggcaacatatccattaacccatggacaat 534
             |||||||||||||||| |||  |||||| |  ||||||| |||||| |||||||| ||||
Sbjct: 93016 tgctggaaccagtattgatacagcaagccgcagcaacatgtccatttacccatgggcaat 93075

                                                                         
Query: 535   agttgttgtgatgcttgattggatcaaactctggaagacccgtttcagaatcattttccc 594
             | |||||||||||  | ||||| ||||| ||||||||||| | |||| | |||||| |||
Sbjct: 93076 aattgttgtgatgactaattgggtcaaattctggaagacctgcttcatagtcatttcccc 93135

              
Query: 595   c 595
             |
Sbjct: 93136 c 93136



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Plus

                                                                         
Query: 606   ccaagatcatttcctgggtcatactcgtccttcgtcagcattttaccagtctgggtcact 665
             |||||||||| |||||| ||||| ||||| || |   ||| |||| || |||| ||||| 
Sbjct: 93466 ccaagatcatctcctggatcatagtcgtcatttgctggcaatttagcaatctgtgtcacc 93525

                                                        
Query: 666   tcatctttagataaatcaatgccagaataaactcttgcattgc 708
             ||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 93526 tcatctttagacagatcaatgccagaataaactctagcattgc 93568
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                            
Query: 515      tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 574
                |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 32288658 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 32288717

                                                 
Query: 575      cgtttcagaatcattttccccattcgttgctcc 607
                 | |||| |||||||||| ||||| ||||||||
Sbjct: 32288718 tgattcaaaatcattttctccatttgttgctcc 32288750
to top
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                         
Query: 515   tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 574
             |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 22425 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 22484

                                              
Query: 575   cgtttcagaatcattttccccattcgttgctcc 607
              | |||| |||||||||| ||||| ||||||||
Sbjct: 22485 tgattcaaaatcattttctccatttgttgctcc 22517
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                            
Query: 515      tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 574
                |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 32379168 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 32379227

                                                 
Query: 575      cgtttcagaatcattttccccattcgttgctcc 607
                 | |||| |||||||||| ||||| ||||||||
Sbjct: 32379228 tgattcaaaatcattttctccatttgttgctcc 32379260
to top
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
            insert sequence
          Length = 3325

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                        
Query: 515  tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 574
            |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 2683 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 2624

                                             
Query: 575  cgtttcagaatcattttccccattcgttgctcc 607
             | |||| |||||||||| ||||| ||||||||
Sbjct: 2623 tgattcaaaatcattttctccatttgttgctcc 2591
to top
>dbj|AK063754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A04, full
           insert sequence
          Length = 577

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 515 tccattaacccatggacaatagttgttgtgatgcttgattggatcaaactctggaagacc 574
           |||||| |||||||| || ||  ||||||||||||| |  |||||||| |||||||| ||
Sbjct: 258 tccatttacccatgggcagtaactgttgtgatgcttaacaggatcaaattctggaagtcc 199

                                            
Query: 575 cgtttcagaatcattttccccattcgttgctcc 607
            | |||| |||||||||| ||||| ||||||||
Sbjct: 198 tgattcaaaatcattttctccatttgttgctcc 166
to top
>gb|AY108127.1| Zea mays PCO088339 mRNA sequence
          Length = 666

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                       
Query: 318 cttttcagcagcttgtggctaggtgcggcgtggtcatccttatatagtgatgccgcagaa 377
           ||||||||||||||  ||||||| | | |||| || |||||||||| ||| |||||||| 
Sbjct: 217 cttttcagcagcttccggctaggcgggacgtgatcgtccttatataatgaagccgcagag 158

                                                                       
Query: 378 tcagacttcatggcttgatactggttttgaccaagagactggacagtctcaagtgcatct 437
           || |||| ||| |  ||||  |||   |||||||||||||| | |||||| |  ||||||
Sbjct: 157 tctgactgcatcgtctgattttgggcctgaccaagagactgcagagtctcgatggcatct 98

                            
Query: 438 actgtaagctgccagcc 454
           || || |||||||||||
Sbjct: 97  accgtgagctgccagcc 81
to top
>ref|NM_204276.1| Gallus gallus breast cancer 2, early onset (BRCA2), mRNA
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 578  ttcagaatcattttccccattcgttgctccaa 609
            ||||||| |||||||| |||||||||||||||
Sbjct: 3351 ttcagaagcattttccacattcgttgctccaa 3320
to top
>gb|AY083934.1| Gallus gallus breast cancer susceptibility protein (BRCA2) mRNA,
            complete cds
          Length = 10197

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 578  ttcagaatcattttccccattcgttgctccaa 609
            ||||||| |||||||| |||||||||||||||
Sbjct: 3354 ttcagaagcattttccacattcgttgctccaa 3323
to top
>dbj|AB066374.1| Gallus gallus brca2 mRNA for tumor suppressor BRCA2, complete cds
          Length = 10310

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 578  ttcagaatcattttccccattcgttgctccaa 609
            ||||||| |||||||| |||||||||||||||
Sbjct: 3351 ttcagaagcattttccacattcgttgctccaa 3320
to top
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1934290 aaaagaaacaacagctatgcaacaag 1934265
to top
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1897377 aaaagaaacaacagctatgcaacaag 1897352
to top
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1897321 aaaagaaacaacagctatgcaacaag 1897296
to top
>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence
          Length = 252659

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 22     tcagaattttagactcacaaaa 43
              ||||||||||||||||||||||
Sbjct: 182509 tcagaattttagactcacaaaa 182488
to top
>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1955054 aaaagaaacaacagctatgcaacaag 1955029
to top
>emb|AL121958.6|HSDJ71H19 Human DNA sequence from clone RP1-71H19 on chromosome 6 Contains part
             of the PRIM2A gene for primase polypeptide 2A (58kD) and a
             novel gene, complete sequence
          Length = 138411

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 31    tagactcacaaaatcttccaga 52
             ||||||||||||||||||||||
Sbjct: 73780 tagactcacaaaatcttccaga 73801
to top
>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete
             sequence
          Length = 158234

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 31    tagactcacaaaatcttccaga 52
             ||||||||||||||||||||||
Sbjct: 31530 tagactcacaaaatcttccaga 31551
to top
>gb|AC182461.3| Pan troglodytes BAC clone CH251-673H10 from chromosome 6, complete
             sequence
          Length = 188415

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 31    tagactcacaaaatcttccaga 52
             ||||||||||||||||||||||
Sbjct: 36612 tagactcacaaaatcttccaga 36591
to top
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 74      aaaagaaacaacagctaggcaacaag 99
               ||||||||||||||||| ||||||||
Sbjct: 1897254 aaaagaaacaacagctatgcaacaag 1897229
to top
>ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 mRNA, complete cds
          Length = 3348

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 653  agtctgggtcacttcatctttagat 677
            ||||||||||||||| |||||||||
Sbjct: 2589 agtctgggtcacttcttctttagat 2565
to top
>gb|AC166163.3| Mus musculus BAC clone RP23-444G9 from chromosome 17, complete sequence
          Length = 171447

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    atataaacacaataaaagaaa 81
             |||||||||||||||||||||
Sbjct: 75101 atataaacacaataaaagaaa 75121
to top
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete
              sequence
          Length = 258658

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     tatataaacacaataaaagaa 80
              |||||||||||||||||||||
Sbjct: 194672 tatataaacacaataaaagaa 194652
to top
>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
             sequence
          Length = 114935

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 653   agtctgggtcacttcatctttagat 677
             ||||||||||||||| |||||||||
Sbjct: 42366 agtctgggtcacttcttctttagat 42342
to top
>gb|AC098722.3| Mus musculus BAC clone RP23-3B20 from 14, complete sequence
          Length = 197946

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   ttgagctggatccaagtttag 264
             |||||||||||||||||||||
Sbjct: 38287 ttgagctggatccaagtttag 38267
to top
>emb|Y11171.1|BC542A B.cereus bc542a gene
          Length = 2195

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 74  aaaagaaacaacagctaggcaacaa 98
           ||||||||||||||||| |||||||
Sbjct: 315 aaaagaaacaacagctatgcaacaa 291
to top
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 610     gatcatttcctgggtcatactcgtc 634
               ||||||||||| |||||||||||||
Sbjct: 2664792 gatcatttcctcggtcatactcgtc 2664768
to top
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 74      aaaagaaacaacagctaggcaacaa 98
               ||||||||||||||||| |||||||
Sbjct: 2021940 aaaagaaacaacagctatgcaacaa 2021916
to top
>gb|AC154387.2| Mus musculus BAC clone RP23-10K1 from chromosome 16, complete sequence
          Length = 212628

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    aatgctgcactatttgtgct 478
              ||||||||||||||||||||
Sbjct: 120734 aatgctgcactatttgtgct 120753
to top
>gb|AC158397.2| Mus musculus BAC clone RP23-274H19 from chromosome 16, complete sequence
          Length = 197843

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    caacatatccattaacccat 527
              ||||||||||||||||||||
Sbjct: 175446 caacatatccattaacccat 175427
to top
>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 63    ataaacacaataaaagaaacaaca 86
             ||||||| ||||||||||||||||
Sbjct: 28965 ataaacataataaaagaaacaaca 28942
to top
>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    atataaacacaataaaagaaacaa 84
             ||||||||| ||||||||||||||
Sbjct: 63779 atataaacaaaataaaagaaacaa 63756
to top
>ref|XM_545710.2| PREDICTED: Canis familiaris similar to usherin isoform B (LOC488593),
             mRNA
          Length = 15600

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ttcctcttccgccgcctgct 148
             ||||||||||||||||||||
Sbjct: 12343 ttcctcttccgccgcctgct 12362
to top
>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     aatatataaacacaataaaa 77
              ||||||||||||||||||||
Sbjct: 107679 aatatataaacacaataaaa 107660
to top
>gb|AC122354.4| Mus musculus BAC clone RP23-401A2 from chromosome 12, complete sequence
          Length = 192581

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    ttttggccttttcagcagct 330
              ||||||||||||||||||||
Sbjct: 132132 ttttggccttttcagcagct 132151
to top
>emb|Z36238.1|CER74 Caenorhabditis elegans Cosmid R74, complete sequence
          Length = 24957

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 tctacaatctacaatgctta 123
           ||||||||||||||||||||
Sbjct: 201 tctacaatctacaatgctta 182
to top
>gb|AC003092.1| Homo sapiens BAC clone CTA-335O22 from 7, complete sequence
          Length = 108878

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tacattcagaattttagact 36
             ||||||||||||||||||||
Sbjct: 58720 tacattcagaattttagact 58701
to top
>gb|AC146121.3| Pan troglodytes BAC clone RP43-4M8 from 7, complete sequence
          Length = 153260

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tacattcagaattttagact 36
              ||||||||||||||||||||
Sbjct: 111689 tacattcagaattttagact 111708
to top
>emb|AL138885.21| Human DNA sequence from clone RP1-290I10 on chromosome 6 Contains a
            ribosomal protein L7 (RPL7) pseudogene, the TFAP2A gene
            for transcription factor AP-2 alpha (activating
            enhancer-binding protein 2 alpha), four novel genes, a
            mitochondrial ribosomal protein L47 (MRPL47) pseudogene
            and 11 CpG islands, complete sequence
          Length = 180133

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  agcacttgctgtgttttggc 317
            ||||||||||||||||||||
Sbjct: 9698 agcacttgctgtgttttggc 9717
to top
>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence
          Length = 134105

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   tgttttggccttttcagcag 328
             ||||||||||||||||||||
Sbjct: 20428 tgttttggccttttcagcag 20447
to top
>emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P7 on chromosome Xq25-26.3,
             complete sequence
          Length = 103989

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   ctggaaccagtattcatagt 496
             ||||||||||||||||||||
Sbjct: 41570 ctggaaccagtattcatagt 41589
to top
>ref|XM_964459.1| PREDICTED: Tribolium castaneum similar to CG15288-PB, isoform B
            (LOC658046), mRNA
          Length = 9483

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  tgaccaagagactggacagt 424
            ||||||||||||||||||||
Sbjct: 2763 tgaccaagagactggacagt 2782
to top
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     aatatataaacacaataaaagaaa 81
              |||||| |||||||||||||||||
Sbjct: 663290 aatataaaaacacaataaaagaaa 663313
to top
>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete
             sequence
          Length = 200690

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    tataaacacaataaaagaaa 81
             ||||||||||||||||||||
Sbjct: 60240 tataaacacaataaaagaaa 60221
to top
>dbj|AK032933.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720474J21 product:unclassifiable, full insert
           sequence
          Length = 2262

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 63  ataaacacaataaaagaaacaaca 86
           ||||||| ||||||||||||||||
Sbjct: 172 ataaacataataaaagaaacaaca 195
to top
>gb|AC009597.5|AC009597 Homo sapiens chromosome 8, clone RP11-33E15, complete sequence
          Length = 169479

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     aaacacaataaaagaaacaa 84
              ||||||||||||||||||||
Sbjct: 150216 aaacacaataaaagaaacaa 150197
to top
>ref|NM_065436.3| Caenorhabditis elegans Leucyl tRNA Synthetase family member (lrs-1)
            (lrs-1) mRNA, complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  tctacaatctacaatgctta 123
            ||||||||||||||||||||
Sbjct: 1809 tctacaatctacaatgctta 1828
to top
>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     tataaacacaataaaagaaa 81
              ||||||||||||||||||||
Sbjct: 130361 tataaacacaataaaagaaa 130342
to top
>gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, complete sequence
          Length = 121496

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     atataaacacaataaaagaaacaa 84
              |||||||||||| |||||||||||
Sbjct: 114137 atataaacacaagaaaagaaacaa 114160
to top
>gb|AC147324.3| Pan troglodytes BAC clone RP43-41B9 from chromosome 7, complete sequence
          Length = 163009

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     tacattcagaattttagact 36
              ||||||||||||||||||||
Sbjct: 151038 tacattcagaattttagact 151019
to top
>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete
             sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atatataaacacaataaaag 78
             ||||||||||||||||||||
Sbjct: 44377 atatataaacacaataaaag 44396
to top
>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
             sequence
          Length = 102135

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    aatatataaacacaataaaagaaa 81
             |||||||||| |||||||||||||
Sbjct: 48443 aatatataaagacaataaaagaaa 48420
to top
>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence
          Length = 205069

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 661    tcacttcatctttagataaa 680
              ||||||||||||||||||||
Sbjct: 181265 tcacttcatctttagataaa 181284
to top
>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete
             sequence
          Length = 77923

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    aatatataaacacaataaaagaaa 81
             |||||||||| |||||||||||||
Sbjct: 46129 aatatataaagacaataaaagaaa 46152
to top
>gb|AC158200.2| Physcomitrella patens clone JGIASYB-1A15, complete sequence
          Length = 41775

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    ataaaagaaacaacagctaggcaa 95
             ||||||||||||||| ||||||||
Sbjct: 31016 ataaaagaaacaacatctaggcaa 30993
to top
>emb|AL954656.9| Zebrafish DNA sequence from clone CH211-67N10 in linkage group 23,
              complete sequence
          Length = 180590

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     aatatataaacacaataaaa 77
              ||||||||||||||||||||
Sbjct: 176776 aatatataaacacaataaaa 176795
to top
>emb|AL672169.13| Mouse DNA sequence from clone RP23-357I18 on chromosome X, complete
             sequence
          Length = 217552

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   tcatggcttgatactggttttgac 408
             |||||| |||||||||||||||||
Sbjct: 84017 tcatggtttgatactggttttgac 84040
to top
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      aacacaataaaagaaacaacagct 89
               ||||||||||||| ||||||||||
Sbjct: 3821701 aacacaataaaagcaacaacagct 3821678
to top
>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete
           sequence
          Length = 229410

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  atataaacacaataaaagaaacaa 84
           ||||||||| ||||||||||||||
Sbjct: 893 atataaacaaaataaaagaaacaa 916
to top
>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence
          Length = 190233

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     atataaacacaataaaagaaacaa 84
              ||||||||| ||||||||||||||
Sbjct: 171827 atataaacaaaataaaagaaacaa 171804
to top
>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     aatatataaacacaataaaa 77
              ||||||||||||||||||||
Sbjct: 222230 aatatataaacacaataaaa 222249
to top
>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete
              sequence
          Length = 156705

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 60     tatataaacacaataaaagaaaca 83
              |||||||||||||||||| |||||
Sbjct: 113420 tatataaacacaataaaacaaaca 113397
to top
>emb|Z73418.1|HSU55E4 Human DNA sequence from clone LL0XNC01-55E4 on chromosome X, complete
             sequence
          Length = 46930

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   ctggaaccagtattcatagt 496
             ||||||||||||||||||||
Sbjct: 41580 ctggaaccagtattcatagt 41599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,690,364
Number of Sequences: 3902068
Number of extensions: 6690364
Number of successful extensions: 139475
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138855
Number of HSP's gapped (non-prelim): 618
length of query: 711
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 688
effective length of database: 17,143,297,704
effective search space: 11794588820352
effective search space used: 11794588820352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top