| Clone Name | rbasd24e16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 749 bits (378), Expect = 0.0 Identities = 444/462 (96%), Gaps = 3/462 (0%) Strand = Plus / Minus Query: 1 tgcttctttacaagggaaagctctcctaaatgctcccaggcatattttt-gcgatacagg 59 ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 859 tgcttctttacaaggaaaagctctcctaaatgctcccaggcttattttttgcgatacaga 800 Query: 60 ctacaaacacttttacat-ctataggatctgcctgctactcaaaagtaccgcggacacac 118 || |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 799 ctgcaaacacttttacagactataggatctgcctgctactcaaa-gtaccgcggacacac 741 Query: 119 atatttacagatccacaagtaccgggcatgggctcctgcgcctctaaaacttcagcatgg 178 ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct: 740 atatttacagatccacaagtaccgggcatggactcctgcatctctaaaacttcagcatgg 681 Query: 179 cctccaacgcgcgaagaacgtcatcgcgggtaactatacctattacttgattgtcctggt 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 cctccaacgcgcgaagaacgtcatcgcgggtaactatacctattacttgattgtcctggt 621 Query: 239 ttactatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatcggtcactg 298 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 620 ttactatcggtaatctgtggatcttcttcctgagcatcagagctgcggcatcggtcactg 561 Query: 299 ttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtccttg 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 560 ttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtctttg 501 Query: 359 acccatgtgaagccctcgcgcgatcgctcttgacgacgaccccgacacatcggcgggcgc 418 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct: 500 gcccatgtgaagccctcacgtgatcgctcttgacgacgaccccgacacatcggcgggcac 441 Query: 419 tgtcgacaaccgggaggcctgacacgagctggaagtgtcctt 460 ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 440 tgtcgacaaccgggaggcctgacacgagctggaagtggcctt 399
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 716 bits (361), Expect = 0.0 Identities = 439/461 (95%), Gaps = 3/461 (0%) Strand = Plus / Plus Query: 1 tgcttctttacaagggaaagctctcctaaatgctcccaggcatatttttgcgatacaggc 60 ||||||||||||||| |||||||||||||| | |||||||| |||||||||||||||||| Sbjct: 51 tgcttctttacaaggaaaagctctcctaaaagttcccaggcttatttttgcgatacaggc 110 Query: 61 tacaaacacttttacat-ctataggatctgcctgctactcaaaagtaccgcggacacaca 119 ||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| Sbjct: 111 tacaa-cacttttacagactatag-atctgcctgctactcaaaagcaccgcggacacaca 168 Query: 120 tatttacagatccacaagtaccgggcatgggctcctgcgcctctaaaacttcagcatggc 179 |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 169 tatttacagatccacaagtaccgggcatggactcctgcatctctaaaacttcagcatggc 228 Query: 180 ctccaacgcgcgaagaacgtcatcgcgggtaactatacctattacttgattgtcctggtt 239 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 229 ctccaacgcgcgaagaacgtcgtcgcgggtaactatacctattacttgattgtcctggtt 288 Query: 240 tactatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatcggtcactgt 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 tactatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatcggtcactgt 348 Query: 300 tttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtccttga 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 349 tttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtctttgg 408 Query: 360 cccatgtgaagccctcgcgcgatcgctcttgacgacgaccccgacacatcggcgggcgct 419 |||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| ||||| Sbjct: 409 cccatgtgaagccctcgcgcaatcgctcttcacgacgaccccgacgcatctgcgagcgct 468 Query: 420 gtcgacaaccgggaggcctgacacgagctggaagtgtcctt 460 |||||||||||||||||||||||||||||| ||||| |||| Sbjct: 469 gtcgacaaccgggaggcctgacacgagctgaaagtggcctt 509
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 637 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 636 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 577 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 576 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 517 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 516 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 463
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 1055 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 1054 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 995 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 994 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 935 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 934 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 881
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 624 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 623 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 564 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 563 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 504 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 503 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 450
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 636 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 280 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 635 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 576 Query: 281 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 340 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 575 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 516 Query: 341 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 515 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 462
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 196 bits (99), Expect = 4e-47 Identities = 202/235 (85%), Gaps = 1/235 (0%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 220 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 890 Query: 221 ttacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagcatcaga 279 | ||||| ||||||| ||||| || ||||||||||||||| |||||||| ||||||||| Sbjct: 889 tcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagcatcaga 830 Query: 280 gctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcaca 339 ||||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| Sbjct: 829 gctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcact 770 Query: 340 tctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 394 ||||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 769 tctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 715
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 159 bits (80), Expect = 1e-35 Identities = 231/283 (81%) Strand = Plus / Minus Query: 162 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 221 ||||| ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||| Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacctat 535 Query: 222 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 281 ||| |||||||||||| | ||||||||||||||||||||||||||||| ||| | Sbjct: 534 tacnnnnncgtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaac 475 Query: 282 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 341 || ||||| |||| ||||| || | ||||| ||||| ||||||||||||||||| || Sbjct: 474 agcagcatccatcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttc 415 Query: 342 tgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgacccc 401 | ||||||||| | |||||||| || || || || || ||| ||||||||| ||||| Sbjct: 414 cgatatcttcgtcttggacccatgagaggctcttgcccggtcgttcttgacgatcacccc 355 Query: 402 gacacatcggcgggcgctgtcgacaaccgggaggcctgacacg 444 ||| |||| | || |||||||||| ||||| || || |||||| Sbjct: 354 gacgcatctgaggccgctgtcgacgaccggaagccccgacacg 312
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 216 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 275 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 35111790 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 35111731 Query: 276 cagagctgcggcatc 290 ||||||||| ||||| Sbjct: 35111730 cagagctgccgcatc 35111716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 219 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 35111919 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 295 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 354 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562 Query: 355 cttgac 360 ||||| Sbjct: 35111561 tttgac 35111556
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 216 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 275 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 7146 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 7087 Query: 276 cagagctgcggcatc 290 ||||||||| ||||| Sbjct: 7086 cagagctgccgcatc 7072 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 219 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 7275 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 295 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 354 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918 Query: 355 cttgac 360 ||||| Sbjct: 6917 tttgac 6912
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 216 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 275 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 84953 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 84894 Query: 276 cagagctgcggcatc 290 ||||||||| ||||| Sbjct: 84893 cagagctgccgcatc 84879 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 219 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 85082 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 295 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 354 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725 Query: 355 cttgac 360 ||||| Sbjct: 84724 tttgac 84719
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 216 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 275 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 2400 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 2459 Query: 276 cagagctgcggcatc 290 ||||||||| ||||| Sbjct: 2460 cagagctgccgcatc 2474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 161 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 219 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 2271 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 295 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 354 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628 Query: 355 cttgac 360 ||||| Sbjct: 2629 tttgac 2634
>emb|AL359737.16| Human DNA sequence from clone RP11-484H12 on chromosome 13 Contains the 3' end of a novel gene, a novel pseudogene, two novel genes, a feminization 1 homolog a (FEM1A) (KIAA1785) pseudogene, a telomeric repeat binding factor (NIMA-interacting) 1 (TERF1) (TRF PIN2 TRF1 TRBF1 hTRF1-AS) pseudogene, a chromosome 21 open reading frame 70 (C21orf70) pseudogene and four CpG islands, complete sequence Length = 93307 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 2 gcttctttacaagggaaagctctccta 28 |||||||| |||||||||||||||||| Sbjct: 36637 gcttctttccaagggaaagctctccta 36611
>dbj|BS000002.1| Pan troglodytes chromosome 22 clone:PTB-056N14, map 22, complete sequences Length = 168180 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 2 gcttctttacaagggaaagctctccta 28 |||||||| |||||||||||||||||| Sbjct: 113148 gcttctttccaagggaaagctctccta 113122
>dbj|AP006261.1| Homo sapiens genomic DNA, chromosome 18, clone:CTD-2594A10, complete sequence Length = 189276 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2 gcttctttacaagggaaagctctccta 28 |||||||| |||||||||||||||||| Sbjct: 28870 gcttctttccaagggaaagctctccta 28896
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 64 aaacacttttacatctatagga 85 |||||||||||||||||||||| Sbjct: 101167 aaacacttttacatctatagga 101188
>emb|AL162851.10| Human DNA sequence from clone RP11-186M12 on chromosome 22, complete sequence Length = 172545 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 ttctttacaagggaaagctctccta 28 |||||| |||||||||||||||||| Sbjct: 82315 ttctttccaagggaaagctctccta 82291
>emb|BX072566.10| Human DNA sequence from clone RP11-25L22 on chromosome 22, complete sequence Length = 164239 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 ttctttacaagggaaagctctccta 28 |||||| |||||||||||||||||| Sbjct: 11565 ttctttccaagggaaagctctccta 11589
>emb|AL163204.2|HS21C004 Homo sapiens chromosome 21 segment HS21C004 Length = 340000 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 ttctttacaagggaaagctctccta 28 |||||| |||||||||||||||||| Sbjct: 96571 ttctttccaagggaaagctctccta 96547
>emb|AL050303.4|HS214G14 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2, complete sequence Length = 166239 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 ttctttacaagggaaagctctccta 28 |||||| |||||||||||||||||| Sbjct: 91985 ttctttccaagggaaagctctccta 91961
>dbj|AP005670.1| Homo sapiens genomic DNA, chromosome 18 clone:RP11-72P4, complete sequence Length = 184770 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 ttctttacaagggaaagctctccta 28 |||||| |||||||||||||||||| Sbjct: 10174 ttctttccaagggaaagctctccta 10198
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 catcggcgggcgctgtcgac 425 |||||||||||||||||||| Sbjct: 1917126 catcggcgggcgctgtcgac 1917145
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tctgtggatcttcttcttga 271 |||||||||||||||||||| Sbjct: 1378 tctgtggatcttcttcttga 1397
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tcttcttgagcatcagagct 282 |||||||||||||||||||| Sbjct: 171536 tcttcttgagcatcagagct 171517
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 catcggcgggcgctgtcgac 425 |||||||||||||||||||| Sbjct: 75837 catcggcgggcgctgtcgac 75856
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 catcggcgggcgctgtcgac 425 |||||||||||||||||||| Sbjct: 2567233 catcggcgggcgctgtcgac 2567252
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 tttgcgatacaggctacaaa 66 |||||||||||||||||||| Sbjct: 3734 tttgcgatacaggctacaaa 3753
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gctctcctaaatgctcccag 39 |||||||||||||||||||| Sbjct: 76812 gctctcctaaatgctcccag 76793
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcctccaacgcgcgaagaacgtcatcg 204 ||||| ||| |||||||||||||||||| Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 acatatttacagatccacaa 136 |||||||||||||||||||| Sbjct: 119986 acatatttacagatccacaa 119967
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 acatatttacagatccacaa 136 |||||||||||||||||||| Sbjct: 30122 acatatttacagatccacaa 30103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,397,168 Number of Sequences: 3902068 Number of extensions: 3397168 Number of successful extensions: 55133 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55001 Number of HSP's gapped (non-prelim): 126 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)