ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GNPI_CAEEL (Q9XVJ2) Probable glucosamine-6-phosphate isomerase (... 28 4.4
2EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3) 27 9.8
3EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3) 27 9.8

>GNPI_CAEEL (Q9XVJ2) Probable glucosamine-6-phosphate isomerase (EC 3.5.99.6)|
           (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P
           deaminase)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 145 NFFRWELENPVLGIQILNGAINTLXTEHQCEKYEHK 252
           NFFR    NP   I IL+G  NT   E +CE+YE K
Sbjct: 91  NFFRHIDINPA-NIHILDG--NTSDHEKECEEYERK 123



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>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 112 VSKFQNSPGSQNFFRWELENPVLGIQILNGAINTLXTEHQCE 237
           V K+ NSP   NFF    E+ +L  ++LN  ++ L  E + E
Sbjct: 230 VVKYYNSPRQYNFFLTRKESVILN-EVLNRFVDALTNEVRYE 270



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>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 112 VSKFQNSPGSQNFFRWELENPVLGIQILNGAINTLXTEHQCE 237
           V K+ NSP   NFF    E+ +L  ++LN  ++ L  E + E
Sbjct: 230 VVKYYNSPRQYNFFLTRKESVILN-EVLNRFVDALTNEVRYE 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,516,769
Number of Sequences: 219361
Number of extensions: 587456
Number of successful extensions: 1185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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