ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL136438.10| Human DNA sequence from clone RP11-111G7 on chr... 40 4.3
2emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
3emb|AJ242593.1|BA1242593 Bacteriophage A118 complete genome 40 4.3
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
5dbj|AK100897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
6dbj|AK067372.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
7dbj|AK063950.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
8emb|AL844856.6| Mouse DNA sequence from clone RP23-377G1 on chro... 40 4.3

>emb|AL136438.10| Human DNA sequence from clone RP11-111G7 on chromosome 13q11-12.3
              Contains part of the ATP8A2 gene for ATPase,
              aminophospholipid transporter-like, Class I, type 8A,
              member 2 (ML-1 protein)(IB, ATP, ML-1, ATPIB,
              DKFZP434B1913), complete sequence
          Length = 178319

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    atgtgaaaaatatgaacaca 250
              ||||||||||||||||||||
Sbjct: 149109 atgtgaaaaatatgaacaca 149128



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>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18,
             complete sequence
          Length = 176615

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 286   tacagcatataaatntgaaatct 308
             |||||||||||||| ||||||||
Sbjct: 33726 tacagcatataaatctgaaatct 33748



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>emb|AJ242593.1|BA1242593 Bacteriophage A118 complete genome
          Length = 40834

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   gatgggaattagaaaatcca 174
             ||||||||||||||||||||
Sbjct: 19093 gatgggaattagaaaatcca 19112



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 286      tacagcatataaatntgaaatct 308
                |||||||||||||| ||||||||
Sbjct: 23868853 tacagcatataaatctgaaatct 23868875



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>dbj|AK100897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131C16, full
            insert sequence
          Length = 1808

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 286  tacagcatataaatntgaaatct 308
            |||||||||||||| ||||||||
Sbjct: 1761 tacagcatataaatctgaaatct 1739



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>dbj|AK067372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106K01, full
            insert sequence
          Length = 2486

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 286  tacagcatataaatntgaaatct 308
            |||||||||||||| ||||||||
Sbjct: 1791 tacagcatataaatctgaaatct 1769



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>dbj|AK063950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F04, full
            insert sequence
          Length = 1962

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 286  tacagcatataaatntgaaatct 308
            |||||||||||||| ||||||||
Sbjct: 1825 tacagcatataaatctgaaatct 1803



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>emb|AL844856.6| Mouse DNA sequence from clone RP23-377G1 on chromosome 4, complete
             sequence
          Length = 183318

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   aatgtgaaaaatatgaacac 249
             ||||||||||||||||||||
Sbjct: 84393 aatgtgaaaaatatgaacac 84374


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,168,145
Number of Sequences: 3902068
Number of extensions: 2168145
Number of successful extensions: 40972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40949
Number of HSP's gapped (non-prelim): 23
length of query: 323
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 301
effective length of database: 17,147,199,772
effective search space: 5161307131372
effective search space used: 5161307131372
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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