| Clone Name | rbasd24d22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA, complete cds Length = 1386 Score = 95.6 bits (48), Expect = 3e-17 Identities = 84/96 (87%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 2 aattccacagacggaacagcgacagcaaaaatcatcttatcactcgcacagcaccgcgcc 61 ||||||||||| |||| |||||||||||| |||| | ||||||||||||||||||||| Sbjct: 1291 aattccacagatggaatagcgacagcaaa--tcatgtcttcactcgcacagcaccgcgcc 1234 Query: 62 ctcctncagagaatcctnctccggccgncatgcgag 97 ||| | ||||||||||| ||||| ||| |||||||| Sbjct: 1233 ctcttccagagaatcctcctccgcccgccatgcgag 1198
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 Score = 83.8 bits (42), Expect = 1e-13 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand = Plus / Minus Query: 1 gaattccacagacggaacagcgacagcaaaaatcatcttatcactcgcacagcaccgcgc 60 ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct: 1732 gaattacacagacggaacagcgacagcaaa--tcatcttatcactcgcacagcaacgcgc 1675 Query: 61 c 61 | Sbjct: 1674 c 1674
>emb|BX248413.5| Human DNA sequence from clone DASS-263D3 on chromosome 6, complete sequence Length = 75842 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 agcaaaaatcatcttatca 43 ||||||||||||||||||| Sbjct: 31139 agcaaaaatcatcttatca 31121
>emb|AL079301.14|HSDJ753M9 Human DNA sequence from clone RP4-753M9 on chromosome 22 Contains EST and STS, complete sequence Length = 57698 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 atcactcgcacagcaccgc 58 ||||||||||||||||||| Sbjct: 39574 atcactcgcacagcaccgc 39556
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 atcatcttatcactcgcac 50 ||||||||||||||||||| Sbjct: 937370 atcatcttatcactcgcac 937388
>emb|BX814708.1|CNS0AC0C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZH12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1454 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 acagcgacagcaaaaatca 35 ||||||||||||||||||| Sbjct: 251 acagcgacagcaaaaatca 269
>emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in linkage group 25, complete sequence Length = 163788 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 ggaacagcgacagcaaaaa 32 ||||||||||||||||||| Sbjct: 139011 ggaacagcgacagcaaaaa 139029
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 cacagcaccgcgccctcct 66 ||||||||||||||||||| Sbjct: 166891 cacagcaccgcgccctcct 166909
>emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 in linkage group 25, complete sequence Length = 159178 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 ggaacagcgacagcaaaaa 32 ||||||||||||||||||| Sbjct: 101741 ggaacagcgacagcaaaaa 101723
>dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122C02, full insert sequence Length = 865 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 atcatcttatcactcgcac 50 ||||||||||||||||||| Sbjct: 636 atcatcttatcactcgcac 618
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 atcatcttatcactcgcac 50 ||||||||||||||||||| Sbjct: 27767 atcatcttatcactcgcac 27785 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 420,269 Number of Sequences: 3902068 Number of extensions: 420269 Number of successful extensions: 27990 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27939 Number of HSP's gapped (non-prelim): 49 length of query: 129 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 108 effective length of database: 17,151,101,840 effective search space: 1852318998720 effective search space used: 1852318998720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)