ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 96 3e-17
2emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 84 1e-13
3emb|BX248413.5| Human DNA sequence from clone DASS-263D3 on chro... 38 6.0
4emb|AL079301.14|HSDJ753M9 Human DNA sequence from clone RP4-753M... 38 6.0
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
6emb|BX814708.1|CNS0AC0C Arabidopsis thaliana Full-length cDNA Co... 38 6.0
7emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in l... 38 6.0
8dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 6.0
9emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 i... 38 6.0
10dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.0
11dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0... 38 6.0

>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 84/96 (87%), Gaps = 2/96 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    aattccacagacggaacagcgacagcaaaaatcatcttatcactcgcacagcaccgcgcc 61
            ||||||||||| |||| ||||||||||||  |||| |  |||||||||||||||||||||
Sbjct: 1291 aattccacagatggaatagcgacagcaaa--tcatgtcttcactcgcacagcaccgcgcc 1234

                                                
Query: 62   ctcctncagagaatcctnctccggccgncatgcgag 97
            ||| | ||||||||||| ||||| ||| ||||||||
Sbjct: 1233 ctcttccagagaatcctcctccgcccgccatgcgag 1198



to top

>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 57/61 (93%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaattccacagacggaacagcgacagcaaaaatcatcttatcactcgcacagcaccgcgc 60
            ||||| ||||||||||||||||||||||||  |||||||||||||||||||||| |||||
Sbjct: 1732 gaattacacagacggaacagcgacagcaaa--tcatcttatcactcgcacagcaacgcgc 1675

             
Query: 61   c 61
            |
Sbjct: 1674 c 1674



to top

>emb|BX248413.5| Human DNA sequence from clone DASS-263D3 on chromosome 6, complete
             sequence
          Length = 75842

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    agcaaaaatcatcttatca 43
             |||||||||||||||||||
Sbjct: 31139 agcaaaaatcatcttatca 31121



to top

>emb|AL079301.14|HSDJ753M9 Human DNA sequence from clone RP4-753M9 on chromosome 22 Contains EST
             and STS, complete sequence
          Length = 57698

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    atcactcgcacagcaccgc 58
             |||||||||||||||||||
Sbjct: 39574 atcactcgcacagcaccgc 39556



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     atcatcttatcactcgcac 50
              |||||||||||||||||||
Sbjct: 937370 atcatcttatcactcgcac 937388



to top

>emb|BX814708.1|CNS0AC0C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB8ZH12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1454

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  acagcgacagcaaaaatca 35
           |||||||||||||||||||
Sbjct: 251 acagcgacagcaaaaatca 269



to top

>emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in linkage group 25, complete
              sequence
          Length = 163788

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     ggaacagcgacagcaaaaa 32
              |||||||||||||||||||
Sbjct: 139011 ggaacagcgacagcaaaaa 139029



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     cacagcaccgcgccctcct 66
              |||||||||||||||||||
Sbjct: 166891 cacagcaccgcgccctcct 166909



to top

>emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 in linkage group 25,
              complete sequence
          Length = 159178

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     ggaacagcgacagcaaaaa 32
              |||||||||||||||||||
Sbjct: 101741 ggaacagcgacagcaaaaa 101723



to top

>dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122C02, full
           insert sequence
          Length = 865

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 32  atcatcttatcactcgcac 50
           |||||||||||||||||||
Sbjct: 636 atcatcttatcactcgcac 618



to top

>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04
          Length = 175439

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    atcatcttatcactcgcac 50
             |||||||||||||||||||
Sbjct: 27767 atcatcttatcactcgcac 27785


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 420,269
Number of Sequences: 3902068
Number of extensions: 420269
Number of successful extensions: 27990
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27939
Number of HSP's gapped (non-prelim): 49
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top