>JAM2_MOUSE (Q9JI59) Junctional adhesion molecule B precursor (JAM-B)|
           (Junctional adhesion molecule 2) (Vascular endothelial
           junction-associated molecule) (VE-JAM) (CD322 antigen)
          Length = 298

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 135 IWIKSAT*SLGQPGGGRM*INCSILLDVXXWLXXFNVVGEMDEQE 1
           IW K  T  LG P GG    N S  ++    +  FN++ +MD  E
Sbjct: 168 IWFKDGTSLLGNPKGGTH-NNSSYTMNTKSGILQFNMISKMDSGE 211

>CLD9_MOUSE (Q9Z0S7) Claudin-9|
          Length = 217

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 280 GSKCSTATVRICVTDDGAHIIXXAHKSYLVICHGVXXTVYICMSNHSVNLDKIRNLVIGT 101
           G++C+T     CV D+GA          L++  G+   + +C + H++  D    LV   
Sbjct: 101 GAQCTT-----CVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEA 155

Query: 100 ARR 92
            +R
Sbjct: 156 LKR 158

>MURG_CHLTE (Q8KGD4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 364

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 208 HKSYLVICHGVXXTVYICMSNHSVNLDKIRNLVIGTARRW--PYVNKLFHLVGCFXL 44
           + + L +CH +  TV +     +++ D++R  +  +A RW  PY+ ++    G   L
Sbjct: 206 NNAVLKLCHRLEGTVNLIWQTGALDADRMRGEIGTSATRWIGPYIQEMGKAYGAADL 262

>CLD9_HUMAN (O95484) Claudin-9|
          Length = 217

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -2

Query: 280 GSKCSTATVRICVTDDGAHIIXXAHKSYLVICHGVXXTVYICMSNHSVNLDKIRNLVIGT 101
           G++C+T     CV D+GA          +++  G+   + +C + H++  D    LV   
Sbjct: 101 GAQCTT-----CVEDEGAKARIVLTAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEA 155

Query: 100 ARR 92
            +R
Sbjct: 156 LKR 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,927,240
Number of Sequences: 219361
Number of extensions: 607732
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)