ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23k23 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 83.2 bits (204), Expect = 2e-16 Identities = 39/41 (95%), Positives = 40/41 (97%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLES 61 KPETGEVIGVFES+QPSDT LGAKAPKDVKIQGVWYAQLES Sbjct: 289 KPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 80.1 bits (196), Expect = 1e-15 Identities = 36/40 (90%), Positives = 39/40 (97%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 KPETGEVIGVFES+QPSDT LG+KAPKDVKIQG+WYAQLE Sbjct: 290 KPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 79.7 bits (195), Expect = 2e-15 Identities = 36/40 (90%), Positives = 38/40 (95%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 KPETGEVIGVFES+QPSDT LGAK PKDVKIQG+WYAQLE Sbjct: 290 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 79.7 bits (195), Expect = 2e-15 Identities = 36/40 (90%), Positives = 38/40 (95%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 KPETGEVIGVFES+QPSDT LGAK PKDVKIQG+WYAQLE Sbjct: 293 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 78.2 bits (191), Expect = 6e-15 Identities = 35/40 (87%), Positives = 38/40 (95%) Frame = -1 Query: 180 PETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLES 61 P+TGEVIGVFES+QPSDT LGAK PKDVKIQG+WYAQLES Sbjct: 294 PQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 77.8 bits (190), Expect = 7e-15 Identities = 36/40 (90%), Positives = 37/40 (92%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 KPETGEVIGVFES+QPSDT LGAK PKDVKIQGVWY QLE Sbjct: 293 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 77.0 bits (188), Expect = 1e-14 Identities = 35/40 (87%), Positives = 37/40 (92%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 KPETGEVIGVFES+QPSDT LGAK PKDVKIQGVWY Q+E Sbjct: 292 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 77.0 bits (188), Expect = 1e-14 Identities = 35/40 (87%), Positives = 38/40 (95%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 KPETGEVIGVF+S+QPSDT LGAK PKDVKI+GVWYAQLE Sbjct: 291 KPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 75.5 bits (184), Expect = 4e-14 Identities = 38/42 (90%), Positives = 39/42 (92%) Frame = -1 Query: 183 KPETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLESN 58 KPETGEVIGVFESVQPSDT L +APKDVKIQGVWYAQLESN Sbjct: 286 KPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 67.0 bits (162), Expect = 1e-11 Identities = 28/39 (71%), Positives = 34/39 (87%) Frame = -1 Query: 180 PETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 P TGE+ GVFES+QPSDT LGAK PKD+K+ G+WYAQL+ Sbjct: 253 PVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/37 (75%), Positives = 32/37 (86%) Frame = -1 Query: 177 ETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQL 67 ETGE+ GVFES+QPSDT LGAK PKD+K GVWYAQ+ Sbjct: 298 ETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 63.5 bits (153), Expect = 1e-10 Identities = 27/36 (75%), Positives = 31/36 (86%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQL 67 TGE+ GVFES+QPSDT LGAK PKD+KI G+WY QL Sbjct: 256 TGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 55.1 bits (131), Expect = 5e-08 Identities = 22/39 (56%), Positives = 33/39 (84%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLESN 58 TGE+ G+FES QPSDT LGAK P DVK++G++Y +++++ Sbjct: 235 TGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 53.5 bits (127), Expect = 1e-07 Identities = 23/37 (62%), Positives = 31/37 (83%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 +GE+ G FES QPSDT LGA PK+VKI+G++YA++E Sbjct: 237 SGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 53.1 bits (126), Expect = 2e-07 Identities = 23/36 (63%), Positives = 31/36 (86%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQL 67 TGE+ GVF+S QPSDT LGAK P +VKI+G++YA++ Sbjct: 236 TGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 47.8 bits (112), Expect = 8e-06 Identities = 22/37 (59%), Positives = 27/37 (72%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 TGE+ G FES Q SD +GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 47.8 bits (112), Expect = 8e-06 Identities = 22/37 (59%), Positives = 27/37 (72%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 TGE+ G FES Q SD +GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/37 (54%), Positives = 27/37 (72%) Frame = -1 Query: 174 TGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWYAQLE 64 TGEV GVF ++QPSDT +G K DVK+ G +Y ++E Sbjct: 237 TGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.8 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -1 Query: 141 QPSDTXLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 10 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 3.0 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -1 Query: 141 QPSDTXLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 16 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)| Length = 989 Score = 28.5 bits (62), Expect = 5.1 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -1 Query: 177 ETGEVIGVFESVQPSDTXLGAKAPKDVKIQGVWY 76 E G + VF+ Q SDT +G+ DV+ GV Y Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,005,527 Number of Sequences: 219361 Number of extensions: 294354 Number of successful extensions: 703 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 702 length of database: 80,573,946 effective HSP length: 37 effective length of database: 72,457,589 effective search space used: 1738982136 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
