ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23k04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro... 67 1e-11
2CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ... 40 0.002
3CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla... 40 0.002
4CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type... 39 0.003
5CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type... 39 0.004
6CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 39 0.004
7CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast... 39 0.004
8CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl... 39 0.005
9CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 38 0.007
10CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 38 0.007
11CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 38 0.007
12CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty... 38 0.007
13CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 38 0.007
14CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ... 38 0.009
15CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 38 0.009
16CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla... 38 0.009
17CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 38 0.009
18CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe... 38 0.009
19CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast... 38 0.009
20CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 38 0.009
21CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo... 37 0.012
22CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 37 0.016
23CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 37 0.016
24CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 37 0.016
25CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 37 0.016
26CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 37 0.016
27CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type... 37 0.016
28CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla... 37 0.016
29CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 37 0.016
30CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 37 0.016
31CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 37 0.016
32CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 37 0.016
33CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 37 0.016
34CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 37 0.020
35CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 37 0.020
36CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 37 0.020
37CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 37 0.020
38CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 37 0.020
39CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 37 0.020
40CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 37 0.020
41CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 37 0.020
42CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 37 0.020
43CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 37 0.020
44CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 37 0.020
45CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 37 0.020
46CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 37 0.020
47CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 37 0.020
48CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 37 0.020
49CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla... 36 0.027
50CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 36 0.035
51CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 36 0.035
52CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ... 36 0.035
53CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 35 0.045
54CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl... 35 0.059
55CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 35 0.059
56CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 35 0.059
57CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 35 0.059
58CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 35 0.077
59CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla... 33 0.17
60CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type... 31 1.1
61CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chlo... 30 1.9
62CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla... 30 2.5
63CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29 29 4.2
64CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl... 28 7.2
65CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chlorop... 28 9.5 
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 31/35 (88%), Positives = 32/35 (91%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AKYQAFELIHARW MLGAAGFIIP ALNK+GAN G
Sbjct: 108 AKYQAFELIHARWAMLGAAGFIIPEALNKYGANCG 142
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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G I P  L+K G   G
Sbjct: 91  AKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG 125
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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = -1

Query: 96  QAFELIHARWXMLGAAGFIIPXALNKFG 13
           Q  EL+H RW MLGAAG  IP  L K G
Sbjct: 104 QQAELVHCRWAMLGAAGIFIPELLTKIG 131
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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKF 16
           A+Y+  ELIHARW +LGA G + P  L+++
Sbjct: 77  ARYREIELIHARWALLGALGILTPELLSQY 106
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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -1

Query: 102 KYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           +Y+  ELIHARW MLGA G   P  L K G   G
Sbjct: 81  RYRELELIHARWAMLGALGCQTPELLAKSGTKFG 114
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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L+K G   G
Sbjct: 92  AKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG 126
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>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = -1

Query: 87  ELIHARWXMLGAAGFIIPXALNKFG 13
           EL+H+RW MLGAAG  IP  L K G
Sbjct: 107 ELVHSRWAMLGAAGIFIPEFLTKIG 131
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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKF 16
           AK +A E+IH RW MLGA G I P  L K+
Sbjct: 90  AKNRALEVIHGRWAMLGALGCIFPEVLEKW 119
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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L++ G   G
Sbjct: 90  AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 124
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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH+RW MLGA G + P  L+K G   G
Sbjct: 90  ARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 124
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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L++ G   G
Sbjct: 82  AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 116
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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L++ G   G
Sbjct: 55  AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 89
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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L++ G   G
Sbjct: 89  AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 123
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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IHARW MLGA G + P  L K G   G
Sbjct: 95  ARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG 129
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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH RW MLGA G + P  L+K G   G
Sbjct: 92  ARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG 126
to top
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH RW MLGA G + P  L+K G   G
Sbjct: 92  ARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG 126
to top
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH RW MLGA G + P  L+K G   G
Sbjct: 92  ARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG 126
to top
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L K G   G
Sbjct: 92  AKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG 126
to top
>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L K G   G
Sbjct: 91  AKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG 125
to top
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH RW MLGA G + P  L+K G   G
Sbjct: 64  ARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG 98
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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L K G   G
Sbjct: 93  AKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG 127
to top
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 92  AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 126
to top
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           +K +  E+IH+RW MLGA G + P  L++ G   G
Sbjct: 96  SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 130
to top
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 92  AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 126
to top
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 72  AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 106
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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 91  AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 125
to top
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 102 KYQAFELIHARWXMLGAAGFIIPXALNKF 16
           KY+  E+IHARW +LGA G + P  L+ +
Sbjct: 83  KYRELEVIHARWALLGALGILTPELLSTY 111
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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 83  AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 117
to top
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 88  AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 122
to top
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 105 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 139
to top
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 105 AKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 139
to top
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           +K +  E+IH+RW MLGA G + P  L++ G   G
Sbjct: 95  SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG 129
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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKF 16
           A+ +A E+IH RW MLGA G + P  L K+
Sbjct: 93  ARNRALEVIHGRWAMLGALGCVFPEVLQKW 122
to top
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 101 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 135
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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
to top
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 128
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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 92  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 126
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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 92  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 126
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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 92  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 126
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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 91  AKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG 125
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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 93  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 127
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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 93  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 127
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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P  L + G   G
Sbjct: 93  AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 127
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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 36.2 bits (82), Expect = 0.027
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH+RW MLGA G   P  L K G   G
Sbjct: 92  ARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG 126
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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 93  ARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 127
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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH+RW MLGA G + P  L + G   G
Sbjct: 93  ARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 127
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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH+ W MLGA G + P  L++ G   G
Sbjct: 33  AKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG 67
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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           A+ +  E+IH RW MLGA G + P  L + G   G
Sbjct: 92  ARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 126
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>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 102 KYQAFELIHARWXMLGAAGFIIPXAL 25
           +Y+  ELIH RW ML   G I+P AL
Sbjct: 83  RYKESELIHCRWAMLAVPGIIVPEAL 108
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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P    + G   G
Sbjct: 93  AKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG 127
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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P    + G   G
Sbjct: 93  AKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG 127
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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P    + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG 128
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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.077
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW MLGA G + P    + G   G
Sbjct: 94  AKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG 128
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>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 87  ELIHARWXMLGAAGFIIPXALNKFG 13
           EL++ RW MLG AG ++P    K G
Sbjct: 96  ELVNGRWAMLGVAGMLLPEVFTKIG 120
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>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 102 KYQAFELIHARWXMLGAAGFIIPXAL 25
           +Y+  ELIHAR  +LGA G + P  L
Sbjct: 100 RYRELELIHARCGLLGALGMVTPELL 125
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>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast|
           precursor (LHCII protein 4.3) (LHCB4.3)
          Length = 276

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 102 KYQAFELIHARWXMLGAAGFIIPXAL 25
           +++  ELIH RW MLG  G I   AL
Sbjct: 136 RFRECELIHGRWAMLGTLGAIAVEAL 161
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>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 87  ELIHARWXMLGAAGFIIPXALNKFG 13
           E+I+ R+ MLGAAG I P  L K G
Sbjct: 100 EVINGRFAMLGAAGAIAPEILGKAG 124
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>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29|
          Length = 279

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXA 28
           A+++  ELIH RW ML   G ++  A
Sbjct: 130 ARFRECELIHGRWAMLACLGALVAEA 155
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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 105 AKYQAFELIHARWXMLGAAGFIIPXALNKFGANXG 1
           AK +  E+IH RW +    G + P  L + G   G
Sbjct: 91  AKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG 125
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>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast|
           precursor
          Length = 261

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 99  YQAFELIHARWXMLGAAGFIIPXA 28
           Y+  ELIH RW ML   G  +  A
Sbjct: 101 YREAELIHGRWAMLAVLGIFVGQA 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.141    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,651,167
Number of Sequences: 219361
Number of extensions: 139215
Number of successful extensions: 386
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 80,573,946
effective HSP length: 10
effective length of database: 78,380,336
effective search space used: 1881128064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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