ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chr... 40 3.5
2gb|AC119675.2| Homo sapiens chromosome 1 clone RP4-731G4, comple... 40 3.5
3ref|XM_243652.3| PREDICTED: Rattus norvegicus plexin B2 (predict... 40 3.5
4gb|AC007639.5|AC007639 Homo sapiens chromosome 17, clone hRPK.57... 40 3.5

>emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chromosome 9q21.31-22.1
              Contains a novel gene, complete sequence
          Length = 186246

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     ttcacaggaaaaatatgttc 64
              ||||||||||||||||||||
Sbjct: 176726 ttcacaggaaaaatatgttc 176745



to top

>gb|AC119675.2| Homo sapiens chromosome 1 clone RP4-731G4, complete sequence
          Length = 138939

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   aggtgtgattcacaggaaaa 56
            ||||||||||||||||||||
Sbjct: 3852 aggtgtgattcacaggaaaa 3871



to top

>ref|XM_243652.3| PREDICTED: Rattus norvegicus plexin B2 (predicted)
           (Plxnb2_predicted), mRNA
          Length = 5799

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ctgaagacactgggactgga 164
           ||||||||||||||||||||
Sbjct: 145 ctgaagacactgggactgga 164



to top

>gb|AC007639.5|AC007639 Homo sapiens chromosome 17, clone hRPK.57_A_1, complete sequence
          Length = 94205

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    taatcatcatgggtacaata 94
             ||||||||||||||||||||
Sbjct: 40592 taatcatcatgggtacaata 40573


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,778,725
Number of Sequences: 3902068
Number of extensions: 1778725
Number of successful extensions: 29071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29066
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top