>Y3657_MYCBO (P67773) Hypothetical protein Mb3657|
          Length = 291

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = -2

Query: 392 DRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 249
           +RPSP Y + +  P+E+ +GD ++ +G L H +  N +   R AL+++
Sbjct: 172 ERPSPPYPEGK--PVEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217

>Y3633_MYCTU (P67772) Hypothetical protein Rv3633/MT3735|
          Length = 291

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = -2

Query: 392 DRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 249
           +RPSP Y + +  P+E+ +GD ++ +G L H +  N +   R AL+++
Sbjct: 172 ERPSPPYPEGK--PVEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217

>PAHX_CAEEL (O62515) Probable phytanoyl-CoA dioxygenase (EC 1.14.11.18)|
           (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
           oxidase)
          Length = 312

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 356 VPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEGCKWSKDNWIQRKTAPEPL 177
           + +EM+ GD V  H  L+H S  N +   R A+S H  + + C++       ++T  E +
Sbjct: 213 IHVEMEPGDTVFFHPILIHGSGANRTEGFRKAISCHYANDDLCRYVNVEGTTQETLAEEI 272

>MRE11_METTH (O26641) DNA double-strand break repair protein mre11|
          Length = 587

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 341 KSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEG 231
           K  DF++I GDL H +  N+  V R  L L  V   G
Sbjct: 207 KDVDFMIIAGDLFHSNIPNMETVKRATLELRRVREAG 243

>PAHX_BOVIN (O18778) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC|
           1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH)
           (Phytanic acid oxidase)
          Length = 337

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 356 VPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVD 240
           V L M+ GD V  H  L+H S  N S   R A+S H  D
Sbjct: 246 VHLVMEKGDTVFFHPLLIHGSGRNKSQGFRKAISCHFAD 284

>NQO3_THET8 (Q56223) NADH-quinone oxidoreductase subunit 3 (EC 1.6.99.5) (NADH|
           dehydrogenase I chain 3) (NDH-1 subunit 3)
          Length = 783

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = -2

Query: 404 GTHFDRPSPLYDQKEFVPLE--MKSGDFVVIHGDLVHQSFENLSPVSRHALSL-----HV 246
           G  +D P  LY    FVP E  +K   FVV+H   +H   E  + V   A +      H+
Sbjct: 555 GASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHL 614

Query: 245 VDMEG 231
           V++EG
Sbjct: 615 VNLEG 619

>PAHX_HUMAN (O14832) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC|
           1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH)
           (Phytanic acid oxidase)
          Length = 338

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 371 DQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 249
           + K  V L M+ GD V  H  L+H S +N +   R A+S H
Sbjct: 241 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCH 281

>EX7L_CHLPN (Q9Z6J7) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 554

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 407 NGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHAL 258
           NG  F   S  YD+K       K GD V+IHG L   +      +  HAL
Sbjct: 55  NGAFFHFKSKYYDRKP------KDGDAVIIHGKLAVYAPRGQYQIVAHAL 98

>Y1017_HAEIN (O86231) Hypothetical aquaporin-like protein HI1017|
          Length = 213

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 180 WFGRSFPLYPVILGPFTSFHVN 245
           WFG S     VI GP T  HVN
Sbjct: 22  WFGLSMVSIAVIFGPLTGAHVN 43

>PAHX_RAT (P57093) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC|
           1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH)
           (Phytanic acid oxidase)
          Length = 338

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 356 VPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEGCKW 222
           V L M+ GD V  H  L+H S  N +   R A+S H    + CK+
Sbjct: 246 VHLVMEKGDTVFFHPLLIHGSGRNRTQGFRKAISCHYGSSD-CKY 289

>OBP_HHV11 (P10193) Origin of replication binding protein|
          Length = 851

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = +2

Query: 38  VHM*XRMKKKQHXSAAFPNFTXPRISNWNCLLEISGSLAXG*TKTHTVVRAQFSSVSSYP 217
           VH    ++++QH    FPN + P      C+  +   +  G  KT  ++R    ++ S  
Sbjct: 49  VHPKTTIERQQHGPVTFPNASAPTA---RCVTVVRAPMGSG--KTTALIRWLREAIHSPD 103

Query: 218 WTIYILPCQ 244
            ++ ++ C+
Sbjct: 104 TSVLVVSCR 112

>GLGB_SYNPX (Q7U646) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 775

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 248 VVDMEGCKWSKDNWIQRKTAPEPL 177
           V  ++G +WS  +W+QR+ +  PL
Sbjct: 220 VARLDGFQWSDGSWMQRRDSSNPL 243

>PAHX_MOUSE (O35386) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC|
           1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH)
           (Phytanic acid oxidase) (Lupus nephritis-associated
           peptide 1)
          Length = 338

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 356 VPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 249
           V L M+ GD V  H  L+H S  N +   R A+S H
Sbjct: 246 VHLVMEKGDTVFFHPLLIHGSGRNKTQGFRKAISCH 281

>GUN5_BACAG (O85465) Endoglucanase 5A (EC 3.2.1.4) (Endo-1,4-beta-glucanase)|
           (Alkaline cellulase)
          Length = 400

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 335 GDFVVIHGDLVHQSFEN--LSPVSRHALSLH--VVDMEGCKWSKDNW 207
           G   + +G+LV++  E   L  +S H L  +   V+ E  KW +D+W
Sbjct: 36  GQLSISNGELVNERGEQVQLKGMSSHGLQWYGQFVNYESMKWLRDDW 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,218,169
Number of Sequences: 219361
Number of extensions: 1028374
Number of successful extensions: 2456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)