ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M24425.1|BLYACPI Barley acyl carrier protein I (ACP I) mRNA, ... 545 e-152
2gb|M58753.1|BLYACL1 Hordeum vulgare acyl carrier protein I (Acl1... 545 e-152
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
4dbj|AK120370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
5dbj|AK060472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.004
7emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC OSJNBb... 50 0.004
8emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103... 50 0.004
9ref|XM_413956.1| PREDICTED: Gallus gallus similar to microtubule... 40 3.9
10gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosom... 40 3.9
11gb|AY487232.1| Arabidopsis arenosa isolate Aren3 RPP13-like prot... 40 3.9
12gb|AC122256.3| Mus musculus BAC clone RP23-178H7 from 7, complet... 40 3.9
13emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chr... 40 3.9
14emb|AL157948.10| Human DNA sequence from clone RP4-686N16 on chr... 40 3.9
15emb|BX571828.6| Zebrafish DNA sequence from clone DKEY-281I15 in... 40 3.9
16gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 3.9
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
18ref|NM_210016.1| Eremothecium gossypii AEL198Wp (AEL198W), mRNA 40 3.9
19gb|AF041386.1|AF041386 Fragaria x ananassa clone FANR3 acyl carr... 40 3.9
20emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4,... 40 3.9

>gb|M24425.1|BLYACPI Barley acyl carrier protein I (ACP I) mRNA, complete cds
          Length = 768

 Score =  545 bits (275), Expect = e-152
 Identities = 291/298 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagcttgtttatgangccnttgggtaattaacccnaagcaccaacacaaaatctcgag 60
           |||||||||||||||| ||| |||||||||||||||  |||| |||||||||||||||||
Sbjct: 752 cctagcttgtttatgaagcctttgggtaattaacccgcagcaacaacacaaaatctcgag 693

                                                                       
Query: 61  aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 633

                                                                       
Query: 121 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 573

                                                                       
Query: 181 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 513

                                                                     
Query: 241 acaagcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 512 acaagcttctcgataaggttcgctgcatcctgcacggttgcaatgtcctgcgcgcttg 455



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>gb|M58753.1|BLYACL1 Hordeum vulgare acyl carrier protein I (Acl1) gene, complete cds
          Length = 3822

 Score =  545 bits (275), Expect = e-152
 Identities = 291/298 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctagcttgtttatgangccnttgggtaattaacccnaagcaccaacacaaaatctcgag 60
            |||||||||||||||| ||| |||||||||||||||  |||| |||||||||||||||||
Sbjct: 3155 cctagcttgtttatgaagcctttgggtaattaacccgcagcaacaacacaaaatctcgag 3096

                                                                        
Query: 61   aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3095 aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 3036

                                                                        
Query: 121  ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3035 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 2976

                                                                        
Query: 181  gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 2916

                                                                      
Query: 241  acaagcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
            |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2915 acaagcttctcgataaggttcgctgcatcctgcacggttgcaatgtcctgcgcgcttg 2858



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244      agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
                ||||||||||| ||||| |||||||| || || | ||| ||||||||||| ||||
Sbjct: 21276613 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 21276667



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>dbj|AK120370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070J18, full
           insert sequence
          Length = 826

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
           ||||||||||| ||||| |||||||| || || | ||| ||||||||||| ||||
Sbjct: 499 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 445



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>dbj|AK060472.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E08, full
           insert sequence
          Length = 820

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
           ||||||||||| ||||| |||||||| || || | ||| ||||||||||| ||||
Sbjct: 486 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 432



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 244      agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
                ||||||||||| ||||| |||||||| || || | ||| ||||||||||| ||||
Sbjct: 21202832 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 21202886



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>emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC OSJNBb0094E08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137571

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 244   agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
             ||||||||||| ||||| |||||||| || || | ||| ||||||||||| ||||
Sbjct: 13587 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 13533



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>emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103_B10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 95132

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 244   agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298
             ||||||||||| ||||| |||||||| || || | ||| ||||||||||| ||||
Sbjct: 84665 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 84611



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>ref|XM_413956.1| PREDICTED: Gallus gallus similar to microtubule-associated protein 1
            A; Microtubule-associated protein 1a (LOC415588), mRNA
          Length = 9518

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   agaggatgaagaaagaacaa 78
            ||||||||||||||||||||
Sbjct: 2499 agaggatgaagaaagaacaa 2518



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>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence
          Length = 200592

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   aaaaatcagaagtccacaga 173
             ||||||||||||||||||||
Sbjct: 73658 aaaaatcagaagtccacaga 73639



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>gb|AY487232.1| Arabidopsis arenosa isolate Aren3 RPP13-like protein gene, partial
           cds
          Length = 1816

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 tcttctctgtcacaagcttc 249
           ||||||||||||||||||||
Sbjct: 141 tcttctctgtcacaagcttc 122



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>gb|AC122256.3| Mus musculus BAC clone RP23-178H7 from 7, complete sequence
          Length = 183325

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    aaaaatcagaagtccacaga 173
              ||||||||||||||||||||
Sbjct: 112130 aaaaatcagaagtccacaga 112111



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>emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chromosome 6 Contains the
             5' end of transforming protein P21A (K-RAS) (C-K-RAS)
             pseudogene, complete sequence
          Length = 128386

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    agaggatgaagaaagaacaa 78
             ||||||||||||||||||||
Sbjct: 88368 agaggatgaagaaagaacaa 88387



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>emb|AL157948.10| Human DNA sequence from clone RP4-686N16 on chromosome 1p31.3-33
             Contains the 3' end of gene KIAA1365, complete sequence
          Length = 94870

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tccataaattattttctctc 137
             ||||||||||||||||||||
Sbjct: 31193 tccataaattattttctctc 31174



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>emb|BX571828.6| Zebrafish DNA sequence from clone DKEY-281I15 in linkage group 22,
             complete sequence
          Length = 212429

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    gaaagaacaaatggcaatga 88
             ||||||||||||||||||||
Sbjct: 39586 gaaagaacaaatggcaatga 39567



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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ccagatgacacctttgcctt 194
              ||||||||||||||||||||
Sbjct: 262309 ccagatgacacctttgcctt 262290



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 144      aatgcgaccgaaaaatcagaagtc 167
                ||||||||||||||||| ||||||
Sbjct: 28855872 aatgcgaccgaaaaatctgaagtc 28855849



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>ref|NM_210016.1| Eremothecium gossypii AEL198Wp (AEL198W), mRNA
          Length = 1218

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 ccagatgacacctttgcctt 194
           ||||||||||||||||||||
Sbjct: 845 ccagatgacacctttgcctt 826



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>gb|AF041386.1|AF041386 Fragaria x ananassa clone FANR3 acyl carrier protein mRNA, complete
           cds
          Length = 674

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 36/42 (85%)
 Strand = Plus / Minus

                                                     
Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatg 285
           ||||||||||| || | ||| |||||||| |||| |||||||
Sbjct: 430 agcttctcgataagatccgcagcatcctgaacggttgcaatg 389



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>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04,
             complete sequence
          Length = 154865

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   aatgcgaccgaaaaatcagaagtc 167
             ||||||||||||||||| ||||||
Sbjct: 67934 aatgcgaccgaaaaatctgaagtc 67911


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,747,369
Number of Sequences: 3902068
Number of extensions: 2747369
Number of successful extensions: 52382
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52312
Number of HSP's gapped (non-prelim): 70
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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