| Clone Name | rbasd23h08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M24425.1|BLYACPI Barley acyl carrier protein I (ACP I) mRNA, complete cds Length = 768 Score = 545 bits (275), Expect = e-152 Identities = 291/298 (97%) Strand = Plus / Minus Query: 1 cctagcttgtttatgangccnttgggtaattaacccnaagcaccaacacaaaatctcgag 60 |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 752 cctagcttgtttatgaagcctttgggtaattaacccgcagcaacaacacaaaatctcgag 693 Query: 61 aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 633 Query: 121 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 573 Query: 181 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 513 Query: 241 acaagcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 512 acaagcttctcgataaggttcgctgcatcctgcacggttgcaatgtcctgcgcgcttg 455
>gb|M58753.1|BLYACL1 Hordeum vulgare acyl carrier protein I (Acl1) gene, complete cds Length = 3822 Score = 545 bits (275), Expect = e-152 Identities = 291/298 (97%) Strand = Plus / Minus Query: 1 cctagcttgtttatgangccnttgggtaattaacccnaagcaccaacacaaaatctcgag 60 |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||| Sbjct: 3155 cctagcttgtttatgaagcctttgggtaattaacccgcagcaacaacacaaaatctcgag 3096 Query: 61 aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3095 aggatgaagaaagaacaaatggcaatgaacacacaacatagactgaatgcaaagctgtcc 3036 Query: 121 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3035 ataaattattttctctcgccccaaatgcgaccgaaaaatcagaagtccacagatccagat 2976 Query: 181 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2975 gacacctttgccttctaaagctgtccaatgaacctaggcgcttatgcggtcttctctgtc 2916 Query: 241 acaagcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2915 acaagcttctcgataaggttcgctgcatcctgcacggttgcaatgtcctgcgcgcttg 2858
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.004 Identities = 47/55 (85%) Strand = Plus / Plus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 ||||||||||| ||||| |||||||| || || | ||| ||||||||||| |||| Sbjct: 21276613 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 21276667
>dbj|AK120370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070J18, full insert sequence Length = 826 Score = 50.1 bits (25), Expect = 0.004 Identities = 47/55 (85%) Strand = Plus / Minus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 ||||||||||| ||||| |||||||| || || | ||| ||||||||||| |||| Sbjct: 499 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 445
>dbj|AK060472.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E08, full insert sequence Length = 820 Score = 50.1 bits (25), Expect = 0.004 Identities = 47/55 (85%) Strand = Plus / Minus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 ||||||||||| ||||| |||||||| || || | ||| ||||||||||| |||| Sbjct: 486 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 432
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.004 Identities = 47/55 (85%) Strand = Plus / Plus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 ||||||||||| ||||| |||||||| || || | ||| ||||||||||| |||| Sbjct: 21202832 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 21202886
>emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC OSJNBb0094E08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137571 Score = 50.1 bits (25), Expect = 0.004 Identities = 47/55 (85%) Strand = Plus / Minus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 ||||||||||| ||||| |||||||| || || | ||| ||||||||||| |||| Sbjct: 13587 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 13533
>emb|AL713937.3|CNS07YPI Oryza sativa chromosome 12, . BAC OJ1103_B10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 95132 Score = 50.1 bits (25), Expect = 0.004 Identities = 47/55 (85%) Strand = Plus / Minus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatgtcctgcgcgcttg 298 ||||||||||| ||||| |||||||| || || | ||| ||||||||||| |||| Sbjct: 84665 agcttctcgatcaggtttgctgcatcttgaacagttgcgatgtcctgcgcacttg 84611
>ref|XM_413956.1| PREDICTED: Gallus gallus similar to microtubule-associated protein 1 A; Microtubule-associated protein 1a (LOC415588), mRNA Length = 9518 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 agaggatgaagaaagaacaa 78 |||||||||||||||||||| Sbjct: 2499 agaggatgaagaaagaacaa 2518
>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence Length = 200592 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaaaatcagaagtccacaga 173 |||||||||||||||||||| Sbjct: 73658 aaaaatcagaagtccacaga 73639
>gb|AY487232.1| Arabidopsis arenosa isolate Aren3 RPP13-like protein gene, partial cds Length = 1816 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcttctctgtcacaagcttc 249 |||||||||||||||||||| Sbjct: 141 tcttctctgtcacaagcttc 122
>gb|AC122256.3| Mus musculus BAC clone RP23-178H7 from 7, complete sequence Length = 183325 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaaaatcagaagtccacaga 173 |||||||||||||||||||| Sbjct: 112130 aaaaatcagaagtccacaga 112111
>emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chromosome 6 Contains the 5' end of transforming protein P21A (K-RAS) (C-K-RAS) pseudogene, complete sequence Length = 128386 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 agaggatgaagaaagaacaa 78 |||||||||||||||||||| Sbjct: 88368 agaggatgaagaaagaacaa 88387
>emb|AL157948.10| Human DNA sequence from clone RP4-686N16 on chromosome 1p31.3-33 Contains the 3' end of gene KIAA1365, complete sequence Length = 94870 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tccataaattattttctctc 137 |||||||||||||||||||| Sbjct: 31193 tccataaattattttctctc 31174
>emb|BX571828.6| Zebrafish DNA sequence from clone DKEY-281I15 in linkage group 22, complete sequence Length = 212429 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gaaagaacaaatggcaatga 88 |||||||||||||||||||| Sbjct: 39586 gaaagaacaaatggcaatga 39567
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ccagatgacacctttgcctt 194 |||||||||||||||||||| Sbjct: 262309 ccagatgacacctttgcctt 262290
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 aatgcgaccgaaaaatcagaagtc 167 ||||||||||||||||| |||||| Sbjct: 28855872 aatgcgaccgaaaaatctgaagtc 28855849
>ref|NM_210016.1| Eremothecium gossypii AEL198Wp (AEL198W), mRNA Length = 1218 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ccagatgacacctttgcctt 194 |||||||||||||||||||| Sbjct: 845 ccagatgacacctttgcctt 826
>gb|AF041386.1|AF041386 Fragaria x ananassa clone FANR3 acyl carrier protein mRNA, complete cds Length = 674 Score = 40.1 bits (20), Expect = 3.9 Identities = 36/42 (85%) Strand = Plus / Minus Query: 244 agcttctcgatnaggttcgctgcatcctgcacggntgcaatg 285 ||||||||||| || | ||| |||||||| |||| ||||||| Sbjct: 430 agcttctcgataagatccgcagcatcctgaacggttgcaatg 389
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 aatgcgaccgaaaaatcagaagtc 167 ||||||||||||||||| |||||| Sbjct: 67934 aatgcgaccgaaaaatctgaagtc 67911 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,747,369 Number of Sequences: 3902068 Number of extensions: 2747369 Number of successful extensions: 52382 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52312 Number of HSP's gapped (non-prelim): 70 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)