>H1_NEUCR (Q8J0U2) Histone H1|
          Length = 236

 Score = 36.6 bits (83), Expect = 0.083
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = -3

Query: 734 SGGAELEKEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQK 555
           SGG +L K+  +  PK A P KE  +K    A    A +               ++ K+K
Sbjct: 104 SGGTKLAKKVAKPAPKKAAPKKETKEKKPAAAKKEGAAK---------------KETKEK 148

Query: 554 RAPAPRPSHVSGKGSAERSEASKRSHLA 471
           +APA + +    K +A + E  ++   A
Sbjct: 149 KAPAAKKAAAPKKAAAPKKEVKEKKAAA 176

>TONB_NEIMA (P57003) Protein tonB|
          Length = 280

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
 Frame = -3

Query: 725 AELEKEKEESRPKNAKPNKEEDDKMRTTA-ANVAARQAVGGSDMFSKWQLMAEQAKQKRA 549
           A++++ KEE +P+  KP  EE  K      A    + A          +   E+  +K  
Sbjct: 94  ADIQQPKEEPKPEE-KPKPEEKPKPEPKPEAKPVPKPA----------EKPVEKPSEK-- 140

Query: 548 PAPRPSHVSGKGSAERSEAS-KRSHLAAFGTGGTERQGKGSFANRHSHG 405
           PA  P + S K  +E+     K + +   GTG  E  GKGS   +  HG
Sbjct: 141 PAEHPGNASAKADSEQGNGEDKGTGIKGDGTGRGEGSGKGSGGVKGEHG 189

>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID|
           domain-containing protein 1A) (SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin subfamily F member 1) (SWI-SNF complex protein
           p270) (B120) (SWI-like pr
          Length = 2285

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 374 LHPSQKQFAVAHASGDLRMNPCLAFPCLQFQRPQDGSSLKPR 499
           +HPS  Q ++A   G ++ NP +     Q+  PQ GS+L PR
Sbjct: 737 MHPSMNQSSIAQDRGYMQRNPQMP----QYSSPQPGSALSPR 774

>TONB_NEIMB (P57004) Protein tonB|
          Length = 280

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = -3

Query: 725 AELEKEKEESRPKNAKPNKEEDDKMRTTA-ANVAARQAVGGSDMFSKWQLMAEQAKQKRA 549
           A++++ KEE +P+  KP  EE  K      A    + A          +   E+  +K  
Sbjct: 94  ADIQQPKEEPKPEE-KPKPEEKPKPEPKPEAKPVPKPA----------EKPVEKPSEK-- 140

Query: 548 PAPRPSHVSGKGSAERSEAS-KRSHLAAFGTGGTERQGKGSFANRHSHG 405
           PA  P + S K  +E+     K +     GTG  E  GKGS   +  HG
Sbjct: 141 PAEHPGNASAKADSEQGNGEDKGTGTKGDGTGRGEGSGKGSGGVKGEHG 189

>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 23/133 (17%)
 Frame = -3

Query: 716 EKEKEESRPKNAKPNKEEDDKMRTT-----------AANVAARQAVGGSDMFSKWQLMAE 570
           +KE+E+ R K A   ++++ K RT            +A+   R+    S   S       
Sbjct: 325 DKEREKDRSKEADEKRKKEKKSRTPPRSYNSSRRSRSASRERRRRRSRSSSRSPRTSKTI 384

Query: 569 QAKQKRAPAPRP------------SHVSGKGSAERSEASKRSHLAAFGTGGTERQGKGSF 426
           + K  R+P+PR              H+S +   ERS ++K+S     G    E+      
Sbjct: 385 KRKSSRSPSPRGRNKKEKKREKERDHISDRRERERSTSTKKSSSDRDGKEKVEKTNTPVK 444

Query: 425 ANRHSHGPQRTVS 387
              HS     TVS
Sbjct: 445 EKEHSKEADSTVS 457

>NUCKS_HUMAN (Q9H1E3) Nuclear ubiquitous casein and cyclin-dependent kinases|
           substrate (P1)
          Length = 243

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
 Frame = -3

Query: 728 GAELEKEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAE--QAKQK 555
           G+E E+E+E+  P   K +  ++D +     +       G S   +K  +     + K+K
Sbjct: 112 GSEEEQEEEDEAPFQEKDSGSDEDFLMEDDDD----SDYGSSKKKNKKMVKKSKPERKEK 167

Query: 554 RAPAPR------PSHVSGKGSAERSEASKRS 480
           + P PR      PS V GKG   R  ASK S
Sbjct: 168 KMPKPRLKATVTPSPVKGKGKVGRPTASKAS 198

>IF2_WOLSU (Q7M7X5) Translation initiation factor IF-2|
          Length = 939

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 719 LEKEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRAPAP 540
           ++K  EE  PK  +P+ EE      TA     +  +G SD  S+  L  ++ K+K+ P P
Sbjct: 206 VKKRSEEPAPKADRPSLEEARTPSRTAGLKTLQSLLGESDE-SEAALARKKKKEKKKPLP 264

Query: 539 RPS 531
            P+
Sbjct: 265 APT 267

>Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050|
          Length = 612

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
 Frame = -3

Query: 722 ELEKEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRAPA 543
           E EK+KEE + K  +  KEE  K +        ++     +   + +   ++ ++K    
Sbjct: 313 EEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKEEKK 372

Query: 542 PRPSHVSGKGSAERSEASKRSHLAAFGTGGTERQ-GKGSFANRHSHGPQRTVS 387
                     S    EAS+ + + +   GG  R+ GK S   R  +   R VS
Sbjct: 373 EEKKEEKSGKSLREGEASEEAEMPSVEVGGARRKTGKKSEGGRKRYKIHRRVS 425

>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 23/133 (17%)
 Frame = -3

Query: 716 EKEKEESRPKNAKPNKEEDDKMRTTAANVAA-----------RQAVGGSDMFSKWQLMAE 570
           EKE+E+ R K     +++D K RT   +  A           R+    S   S       
Sbjct: 340 EKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTI 399

Query: 569 QAKQKRAPAPRP------------SHVSGKGSAERSEASKRSHLAAFGTGGTERQGKGSF 426
           + K  R+P+PR              H+S +   ERS + ++S     G    E+      
Sbjct: 400 KRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLK 459

Query: 425 ANRHSHGPQRTVS 387
              H+  P  +VS
Sbjct: 460 EKEHNKEPDSSVS 472

>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)|
          Length = 351

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = -3

Query: 728 GAELEKEKEESRPKNAKPNKEEDDKMR---TTAANVAARQAVGGSDMFSKWQLMAEQAKQ 558
           GA+ EK+KE+ + K  +P K  ++K++     AA     Q   G+      Q  A    +
Sbjct: 69  GADKEKKKEKEKEKEEEPKKPNENKLKQPEQPAAGAGGEQPAAGA---GGEQPAAGAGGE 125

Query: 557 KRAPAPRPSHVSGKGSAERSEASKRSHLAAFGTGGTE 447
           + A   R    +     E+  A       A G GG +
Sbjct: 126 QPAAGARGEQPAAGAGGEQPAAGAGGEQPAAGAGGEQ 162

>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2|
          Length = 836

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 722 ELE-KEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRAP 546
           ELE KE+EE     A   K ED++     A  AAR+              AE+AK+  AP
Sbjct: 115 ELEAKEREERERAEALRQKAEDEERARREAEEAARR--------------AEEAKRAPAP 160

Query: 545 -APRPSHVSGKGSAERS 498
            AP+P+    + SA  S
Sbjct: 161 AAPQPAPAESRASAPPS 177

>RL24_YARLI (Q6C4U6) 60S ribosomal protein L24|
          Length = 155

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -3

Query: 695 RPKNAKPNKEEDDKMRTTAANVAARQAVGGS-DMFS-KWQLMAEQAKQKRAPAPRPSHVS 522
           R K+ K   EE  K R+  +  A R  VG S D+   K     E     RA     +   
Sbjct: 56  RRKHKKGITEEVSKKRSRKSVKAVRGIVGASLDVIKEKRNARPETRNATRAKHAEAAKER 115

Query: 521 GKGSAERSEASKRSHLAAFGTGGTERQGKGS 429
            +  AER +A+K +H+AA G   ++   KGS
Sbjct: 116 KEKEAERRKAAKAAHVAAGGPKVSKLGAKGS 146

>EX5B_CHLTR (O84645) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1026

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 39  MKAGQVHRQTHTAQSYSHDNS 101
           +K+ Q H +TH AQSYSHD S
Sbjct: 321 LKSVQQHLKTHCAQSYSHDES 341

>NUCKS_RAT (Q9EPJ0) Nuclear ubiquitous casein and cyclin-dependent kinases|
           substrate
          Length = 243

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
 Frame = -3

Query: 728 GAELEKEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAE--QAKQK 555
           G+E E E+++  P   K +  ++D +     +       G S   +K  +     + K+K
Sbjct: 112 GSEEEPEEDDEAPFQEKDSGSDEDFLMEDDDD----SDYGSSKKKNKKMVKKSKPERKEK 167

Query: 554 RAPAPR------PSHVSGKGSAERSEASKRS 480
           + P PR      PS V GKG   R  ASK S
Sbjct: 168 KMPKPRLKATVTPSPVKGKGKVGRPTASKTS 198

>SSPA_STAAR (Q6GI34) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 357

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 556 SGHQLQDHPMYLEKDRQNAARLQRGAILRPLELEAR 449
           S   + +HP   + D+Q   ++Q+G  L+PLE   R
Sbjct: 31  SSKAMDNHPQQTQTDKQQTPKIQKGGNLKPLEQRER 66

>IF2_BURS3 (Q39H30) Translation initiation factor IF-2|
          Length = 972

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
 Frame = -3

Query: 719 LEKEKEESRPKNAKPNKEEDDKM---------RTTAANVAARQAVGGSDMFSKWQLMAEQ 567
           LEK+ +E R +  +  +EE ++          R  A   AA + V      ++ Q  A+Q
Sbjct: 136 LEKQAQELRERQERLEREEAERRAREEAAEAERRRAEEEAAAKRVAAEAAAAQQQAAAQQ 195

Query: 566 A---KQKRAPAPRPSHVSGKGSAERS---EASKRSHLAAFGTGGTERQGKGSFANRHSHG 405
           A   +Q+ A + + +    + +AER+   EA+K++  AA       R  +   + R +  
Sbjct: 196 AAAAEQQEAASTQSAQDEARAAAERAAQREAAKKAEDAAREAADKARAEQEEISKRRAAA 255

Query: 404 PQRTVSVKDVI 372
                ++++++
Sbjct: 256 EAEARAIREMM 266

>CT151_HUMAN (Q8NC74) Protein C20orf151|
          Length = 664

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +1

Query: 433 PLPCLSVPPVPKAARWLLFEASLRSADPFPDTWDGLGAGA---RFCLACSAISCHFENIS 603
           PLP  S PP P   R L  ++ LR++ P   T +         R CL    +S H ++  
Sbjct: 245 PLPARSSPPSPAYERGLSLDSFLRASRPSAMTHEAPKLSPKVDRLCLLNRPLSLHLQSPH 304

Query: 604 LPPTACRAA 630
             P A  AA
Sbjct: 305 SSPLAPAAA 313

>CET1_CRYNE (Q5KEQ1) mRNA capping enzyme beta subunit (EC 3.1.3.33)|
           (Polynucleotide 5'-triphosphatase) (mRNA
           5'-triphosphatase) (TPase)
          Length = 397

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
 Frame = -3

Query: 698 SRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRAPA-PRPSHVS 522
           +R  +A  +   +    T + +   RQ VG           AEQ  Q R  A   PSH  
Sbjct: 44  ARMSSAHESDPSEQANATQSGDYVPRQRVGSQG--------AEQEGQSRKRARTSPSHSG 95

Query: 521 GKGS---AERSEASKRSHLAAF-GTGGTERQGKGS-FANRHSHGP 402
           G GS    +R+E S  SH     G   +++ G G  +  RH   P
Sbjct: 96  GNGSYVPRQRTEESHHSHHNGHSGHAQSDQHGNGQVYRPRHGQAP 140

>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 23/133 (17%)
 Frame = -3

Query: 716 EKEKEESRPKNAKPNKEEDDKMRTTAANVAA-----------RQAVGGSDMFSKWQLMAE 570
           +KE+E+ R K     ++++ K RT   +  A           R+    S   S       
Sbjct: 325 DKEREKDRSKETDEKRKKEKKSRTPPRSYNASRRSRSTSRERRRRRSRSSSRSPRTSKTV 384

Query: 569 QAKQKRAPAPRP------------SHVSGKGSAERSEASKRSHLAAFGTGGTERQGKGSF 426
           + K  R+P+PR              H+S +   ERS ++K+S     G    E+      
Sbjct: 385 KRKSSRSPSPRGRNKKEKKREKERDHISDRRERERSTSTKKSSGDRDGKEKVEKSTTPVK 444

Query: 425 ANRHSHGPQRTVS 387
              HS     TVS
Sbjct: 445 EKEHSKESDATVS 457

>CSP_PLAKH (P02894) Circumsporozoite protein precursor (CS)|
          Length = 363

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
 Frame = -3

Query: 728 GAELEKEKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRA 549
           GA+ EK+KE+ + K  +P K  ++K++    N    QA G      + Q   + A   + 
Sbjct: 69  GADKEKKKEKGKEKEEEPKKPNENKLK--QPNEGQPQAQGDGANAGQPQAQGDGANAGQP 126

Query: 548 PAPRPSHVSGKGSAERSEASK-RSHLAAFGTGGTERQGKGSFAN 420
            A      +G+  A+   A+  +      G    + Q +G  AN
Sbjct: 127 QAQGDGANAGQPQAQGDGANAGQPQAQGDGANAGQPQAQGDGAN 170

>ATU_DROME (Q94546) Another transcription unit protein|
          Length = 725

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 551 APAPRPSHVSGKGSAERSEASKRSHLAAFGTGGTERQGKGSFANRHS 411
           AP  + S  SG GS +RS +  RS  +  G+G       GS  +RHS
Sbjct: 30  APGSQRSRRSGSGS-DRSRSGSRSSRSRSGSGSPRSARSGSAESRHS 75

>RIM15_YEAST (P43565) Serine/threonine-protein kinase RIM15 (EC 2.7.11.1)|
          Length = 1770

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
 Frame = -3

Query: 710 EKEESRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRAPAPRPS 531
           E  +SR  N++       ++   + ++  RQ +  S + +  +     ++ K +  P+PS
Sbjct: 607 EATDSRTSNSERPSSSSSRLGIRSRSITPRQKIEYSHVDNDDRTNEMLSRDKDSLQPQPS 666

Query: 530 ---------HVSGKGSAERSEASKRSHLAAFGTGG--TERQGKGSFANRHSHGPQRTVSV 384
                      +  G+   S  S  S L    T    T R+G  SF N  SH  Q+T S 
Sbjct: 667 VDTTITSSTQATTTGTKTNSNNSTNSVLPKLMTSISLTPRRGSPSFGNLASHSMQQTNSF 726

Query: 383 K 381
           K
Sbjct: 727 K 727

>GLNA2_STRHY (P22878) Glutamine synthetase 2 (EC 6.3.1.2) (Glutamine synthetase|
           II) (Glutamate--ammonia ligase II) (GSII)
          Length = 340

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
 Frame = +1

Query: 406 PCEWRFANEPLPCLSVPPVPKAARWLLFE--------ASLRSADPFPDTWDGLGAGARF 558
           P +W F    LP L V      ARWLL          ASL  A P    W+G GA   F
Sbjct: 174 PGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASL-DAKPAKGDWNGAGAHTNF 231

>TONB_NEIGO (O06432) Protein tonB|
          Length = 283

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 2/109 (1%)
 Frame = -3

Query: 725 AELEKEKEESRPKNA-KPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRA 549
           A++++ KE+ +P+   KP  E + K     A   A                    K    
Sbjct: 94  ADIQQPKEKPKPEEKPKPEPEPEAKPAPKPAEKPAE-------------------KPSEK 134

Query: 548 PAPRPSHVSGKGSAERSEAS-KRSHLAAFGTGGTERQGKGSFANRHSHG 405
           PA    + S K  +E+     K +     GTG  E  GKGS   +  HG
Sbjct: 135 PAEHSGNASAKAGSEQGNGEGKGTGTKGDGTGRGEGSGKGSGGAKGEHG 183

>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)|
          Length = 726

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -3

Query: 698 SRPKNAKPNKEEDDKMRTTAANVAARQAVGGSDMFSKWQLMAEQAKQKRAPAPRPSHVSG 519
           ++PK  K  KE++ K +         +     +  +K    A+QA+QK+APA + +  + 
Sbjct: 486 NKPKKKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKVAPPAKQAQQKKAPAKKANSTTT 545

Query: 518 KG 513
            G
Sbjct: 546 AG 547


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,112,941
Number of Sequences: 219361
Number of extensions: 2390147
Number of successful extensions: 8049
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8017
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)