| Clone Name | rbasd22p07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020D08, full insert sequence Length = 2209 Score = 375 bits (189), Expect = e-100 Identities = 282/313 (90%) Strand = Plus / Minus Query: 190 actacccaaaagtgacagaattgaattccttccatgcctcctgtagaatctcaaaaacct 249 |||| |||||||| || | ||||||||| |||||||||||||||||||| |||||||||| Sbjct: 1921 actatccaaaagtaactgtattgaattctttccatgcctcctgtagaatgtcaaaaacct 1862 Query: 250 tttctgctatatacttttgatgcatggcagctcctcgctgttgcaacttatctggatgaa 309 |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 1861 tttctgctatatacttctgatgcatagcagctcctcgttgttgcaacttatctggatgaa 1802 Query: 310 gacataacaatgccctctgataagctttcttaaccgctgctccttcaattatgttaacca 369 | |||||||||||| ||||||| || |||||||| ||||||||||||||||| | ||| | Sbjct: 1801 ggcataacaatgccttctgataggccttcttaacagctgctccttcaattatatcaacaa 1742 Query: 370 atggaactggtttccatccactttcaggccagagaacatattgcagtgtagaaagcaatg 429 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 1741 gggggactggtttccatccactctcaggccatagaacatattgtagtgtagaaagcaatg 1682 Query: 430 accgaatatttccttctttaccctttgaccactcccggattttggattgagatatcttta 489 ||| ||||||||||||||| ||||||||||| |||| ||||||||||| ||| ||||||| Sbjct: 1681 acctaatatttccttcttttccctttgaccattcccagattttggattcagaaatcttta 1622 Query: 490 tttgttccttttc 502 |||| || ||||| Sbjct: 1621 tttgctctttttc 1609
>dbj|AK071995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089P22, full insert sequence Length = 2222 Score = 375 bits (189), Expect = e-100 Identities = 282/313 (90%) Strand = Plus / Minus Query: 190 actacccaaaagtgacagaattgaattccttccatgcctcctgtagaatctcaaaaacct 249 |||| |||||||| || | ||||||||| |||||||||||||||||||| |||||||||| Sbjct: 1897 actatccaaaagtaactgtattgaattctttccatgcctcctgtagaatgtcaaaaacct 1838 Query: 250 tttctgctatatacttttgatgcatggcagctcctcgctgttgcaacttatctggatgaa 309 |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 1837 tttctgctatatacttctgatgcatagcagctcctcgttgttgcaacttatctggatgaa 1778 Query: 310 gacataacaatgccctctgataagctttcttaaccgctgctccttcaattatgttaacca 369 | |||||||||||| ||||||| || |||||||| ||||||||||||||||| | ||| | Sbjct: 1777 ggcataacaatgccttctgataggccttcttaacagctgctccttcaattatatcaacaa 1718 Query: 370 atggaactggtttccatccactttcaggccagagaacatattgcagtgtagaaagcaatg 429 || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct: 1717 gggggactggtttccatccactctcaggccatagaacatattgtagtgtagaaagcaatg 1658 Query: 430 accgaatatttccttctttaccctttgaccactcccggattttggattgagatatcttta 489 ||| ||||||||||||||| ||||||||||| |||| ||||||||||| ||| ||||||| Sbjct: 1657 acctaatatttccttcttttccctttgaccattcccagattttggattcagaaatcttta 1598 Query: 490 tttgttccttttc 502 |||| || ||||| Sbjct: 1597 tttgctctttttc 1585
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 2e-53 Identities = 161/178 (90%) Strand = Plus / Minus Query: 229 cctgtagaatctcaaaaaccttttctgctatatacttttgatgcatggcagctcctcgct 288 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 5134124 cctgtagaatgtcaaaaaccttttctgctatatacttctgatgcatagcagctcctcgtt 5134065 Query: 289 gttgcaacttatctggatgaagacataacaatgccctctgataagctttcttaaccgctg 348 |||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct: 5134064 gttgcaacttatctggatgaaggcataacaatgccttctgataggccttcttaacagctg 5134005 Query: 349 ctccttcaattatgttaaccaatggaactggtttccatccactttcaggccagagaac 406 ||||||||||||| | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct: 5134004 ctccttcaattatatcaacaagggggactggtttccatccactctcaggccatagaac 5133947 Score = 107 bits (54), Expect = 5e-20 Identities = 75/82 (91%) Strand = Plus / Minus Query: 405 acatattgcagtgtagaaagcaatgaccgaatatttccttctttaccctttgaccactcc 464 |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| Sbjct: 5133191 acatattgtagtgtagaaagcaatgacctaatatttccttcttttccctttgaccattcc 5133132 Query: 465 cggattttggattgagatatct 486 | ||||||||||| ||| |||| Sbjct: 5133131 cagattttggattcagaaatct 5133110 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 190 actacccaaaagtgacagaattgaattccttccatgcctcctg 232 |||| |||||||| || | ||||||||| |||||||||||||| Sbjct: 5134564 actatccaaaagtaactgtattgaattctttccatgcctcctg 5134522
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 218 bits (110), Expect = 2e-53 Identities = 161/178 (90%) Strand = Plus / Plus Query: 229 cctgtagaatctcaaaaaccttttctgctatatacttttgatgcatggcagctcctcgct 288 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 35581 cctgtagaatgtcaaaaaccttttctgctatatacttctgatgcatagcagctcctcgtt 35640 Query: 289 gttgcaacttatctggatgaagacataacaatgccctctgataagctttcttaaccgctg 348 |||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct: 35641 gttgcaacttatctggatgaaggcataacaatgccttctgataggccttcttaacagctg 35700 Query: 349 ctccttcaattatgttaaccaatggaactggtttccatccactttcaggccagagaac 406 ||||||||||||| | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct: 35701 ctccttcaattatatcaacaagggggactggtttccatccactctcaggccatagaac 35758 Score = 107 bits (54), Expect = 5e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 405 acatattgcagtgtagaaagcaatgaccgaatatttccttctttaccctttgaccactcc 464 |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| Sbjct: 36514 acatattgtagtgtagaaagcaatgacctaatatttccttcttttccctttgaccattcc 36573 Query: 465 cggattttggattgagatatct 486 | ||||||||||| ||| |||| Sbjct: 36574 cagattttggattcagaaatct 36595 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Plus Query: 190 actacccaaaagtgacagaattgaattccttccatgcctcctg 232 |||| |||||||| || | ||||||||| |||||||||||||| Sbjct: 35141 actatccaaaagtaactgtattgaattctttccatgcctcctg 35183
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 218 bits (110), Expect = 2e-53 Identities = 161/178 (90%) Strand = Plus / Plus Query: 229 cctgtagaatctcaaaaaccttttctgctatatacttttgatgcatggcagctcctcgct 288 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 122394 cctgtagaatgtcaaaaaccttttctgctatatacttctgatgcatagcagctcctcgtt 122453 Query: 289 gttgcaacttatctggatgaagacataacaatgccctctgataagctttcttaaccgctg 348 |||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct: 122454 gttgcaacttatctggatgaaggcataacaatgccttctgataggccttcttaacagctg 122513 Query: 349 ctccttcaattatgttaaccaatggaactggtttccatccactttcaggccagagaac 406 ||||||||||||| | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct: 122514 ctccttcaattatatcaacaagggggactggtttccatccactctcaggccatagaac 122571 Score = 107 bits (54), Expect = 5e-20 Identities = 75/82 (91%) Strand = Plus / Plus Query: 405 acatattgcagtgtagaaagcaatgaccgaatatttccttctttaccctttgaccactcc 464 |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| Sbjct: 123327 acatattgtagtgtagaaagcaatgacctaatatttccttcttttccctttgaccattcc 123386 Query: 465 cggattttggattgagatatct 486 | ||||||||||| ||| |||| Sbjct: 123387 cagattttggattcagaaatct 123408 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Plus Query: 190 actacccaaaagtgacagaattgaattccttccatgcctcctg 232 |||| |||||||| || | ||||||||| |||||||||||||| Sbjct: 121954 actatccaaaagtaactgtattgaattctttccatgcctcctg 121996
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 2e-53 Identities = 161/178 (90%) Strand = Plus / Minus Query: 229 cctgtagaatctcaaaaaccttttctgctatatacttttgatgcatggcagctcctcgct 288 |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 5133341 cctgtagaatgtcaaaaaccttttctgctatatacttctgatgcatagcagctcctcgtt 5133282 Query: 289 gttgcaacttatctggatgaagacataacaatgccctctgataagctttcttaaccgctg 348 |||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct: 5133281 gttgcaacttatctggatgaaggcataacaatgccttctgataggccttcttaacagctg 5133222 Query: 349 ctccttcaattatgttaaccaatggaactggtttccatccactttcaggccagagaac 406 ||||||||||||| | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct: 5133221 ctccttcaattatatcaacaagggggactggtttccatccactctcaggccatagaac 5133164 Score = 107 bits (54), Expect = 5e-20 Identities = 75/82 (91%) Strand = Plus / Minus Query: 405 acatattgcagtgtagaaagcaatgaccgaatatttccttctttaccctttgaccactcc 464 |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| Sbjct: 5132408 acatattgtagtgtagaaagcaatgacctaatatttccttcttttccctttgaccattcc 5132349 Query: 465 cggattttggattgagatatct 486 | ||||||||||| ||| |||| Sbjct: 5132348 cagattttggattcagaaatct 5132327 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 190 actacccaaaagtgacagaattgaattccttccatgcctcctg 232 |||| |||||||| || | ||||||||| |||||||||||||| Sbjct: 5133781 actatccaaaagtaactgtattgaattctttccatgcctcctg 5133739
>emb|AL161637.13| Human DNA sequence from clone RP3-393B19 on chromosome 1p33-34.3 Contains a CpG island, complete sequence Length = 101954 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 602 cttttcctctgtttcaacatggaa 625 |||||||||||||||||||||||| Sbjct: 14364 cttttcctctgtttcaacatggaa 14341
>gb|AC118558.2| Homo sapiens chromosome 1 clone RP11-524M5, complete sequence Length = 51825 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Plus Query: 602 cttttcctctgtttcaacatggaa 625 |||||||||||||||||||||||| Sbjct: 38495 cttttcctctgtttcaacatggaa 38518
>gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, complete sequence Length = 198279 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 561 ttttccatgtgactttcttcac 582 |||||||||||||||||||||| Sbjct: 154228 ttttccatgtgactttcttcac 154207
>ref|NM_102015.2| Arabidopsis thaliana unknown protein AT1G21660 mRNA, complete cds Length = 2027 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 240 tcaaaaaccttttctgctatatacttttg 268 |||||||||||||| || ||||||||||| Sbjct: 1748 tcaaaaaccttttcggcgatatacttttg 1720
>gb|AC004748.1| Homo sapiens chromosome 5, BAC clone 7h13 (LBNL H100), complete sequence Length = 110804 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 88830 ctttatttgttccttttcatt 88850
>gb|AC135497.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0008E02, complete sequence Length = 152974 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 atttgttccttttcattgtca 509 ||||||||||||||||||||| Sbjct: 64431 atttgttccttttcattgtca 64451
>gb|BC081627.1| Danio rerio zgc:92231, mRNA (cDNA clone MGC:92231 IMAGE:7052353), complete cds Length = 3432 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cagtgacatgctgaacaaaaa 177 ||||||||||||||||||||| Sbjct: 3048 cagtgacatgctgaacaaaaa 3068
>gb|AC108399.11| Mus musculus chromosome 19, clone RP24-375O7, complete sequence Length = 180312 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 acaccaaaacaagtacatacaaaag 95 ||||||||||||| ||||||||||| Sbjct: 70209 acaccaaaacaagaacatacaaaag 70185
>gb|AC006377.3| Homo sapiens BAC clone RP11-450H7 from 7, complete sequence Length = 176463 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 174228 ctttatttgttccttttcatt 174208
>gb|AC150977.12| Medicago truncatula clone mth2-32m9, complete sequence Length = 125772 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 562 tttccatgtgactttcttcac 582 ||||||||||||||||||||| Sbjct: 102117 tttccatgtgactttcttcac 102097
>gb|BT010382.1| Arabidopsis thaliana At1g21660 mRNA, complete cds Length = 1572 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 240 tcaaaaaccttttctgctatatacttttg 268 |||||||||||||| || ||||||||||| Sbjct: 1523 tcaaaaaccttttcggcgatatacttttg 1495
>emb|AL512489.11| Human DNA sequence from clone RP11-447O8 on chromosome 6, complete sequence Length = 80846 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 40398 ctttatttgttccttttcatt 40418
>emb|AL451137.8| Human DNA sequence from clone RP11-18A15 on chromosome 9 Contains a CpG island, complete sequence Length = 162837 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 98564 ctttatttgttccttttcatt 98584
>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains part of a novel gene (FLJ22153) and a CpG island, complete sequence Length = 99441 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 3985 ctttatttgttccttttcatt 3965
>emb|AL133349.7| Human DNA sequence from clone RP1-140L23 on chromosome 11p13-14.1 Contains GSSs, complete sequence Length = 65166 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 tggattgagatatctttattt 492 ||||||||||||||||||||| Sbjct: 58265 tggattgagatatctttattt 58285
>emb|AL109853.4|HSJ765F13 Human DNA sequence from clone RP4-765F13 on chromosome Xq25-26.2 Contains two seven transmembrane helix receptor pseudogenes and the gene for a novel protein similar to part of hepatoma-derived growth factor (high-mobility group protein 1-like) (HDGF), complete sequence Length = 106465 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 66051 ctttatttgttccttttcatt 66031
>ref|NM_001004584.1| Danio rerio zgc:92231 (zgc:92231), mRNA Length = 3432 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cagtgacatgctgaacaaaaa 177 ||||||||||||||||||||| Sbjct: 3048 cagtgacatgctgaacaaaaa 3068
>gb|AY099577.1| Arabidopsis thaliana auxilin-like protein (At1g21660) mRNA, complete cds Length = 2027 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 240 tcaaaaaccttttctgctatatacttttg 268 |||||||||||||| || ||||||||||| Sbjct: 1748 tcaaaaaccttttcggcgatatacttttg 1720
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 434 aatatttccttctttaccctttgac 458 |||||||||||||||| |||||||| Sbjct: 1134371 aatatttccttctttaacctttgac 1134347
>gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, complete sequence Length = 174578 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 ctttatttgttccttttcatt 505 ||||||||||||||||||||| Sbjct: 63306 ctttatttgttccttttcatt 63326
>gb|AC022832.13| Homo sapiens chromosome 8, clone RP11-145O15, complete sequence Length = 166236 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 aactggtttccatccactttc 394 ||||||||||||||||||||| Sbjct: 77960 aactggtttccatccactttc 77940
>emb|BX548016.7| Zebrafish DNA sequence from clone DKEY-97O7 in linkage group 7, complete sequence Length = 125478 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 acacttgcatttacaccaaaa 79 ||||||||||||||||||||| Sbjct: 91056 acacttgcatttacaccaaaa 91036
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 atttgttccttttcattgtca 509 ||||||||||||||||||||| Sbjct: 9374030 atttgttccttttcattgtca 9374050
>emb|BX815060.1|CNS0AEL5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1940 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 240 tcaaaaaccttttctgctatatacttttg 268 |||||||||||||| || ||||||||||| Sbjct: 1681 tcaaaaaccttttcggcgatatacttttg 1653
>gb|AC152169.2| Mus musculus BAC clone RP23-79L13 from chromosome 14, complete sequence Length = 236748 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 aacaaaaaatgctatgaaaga 190 ||||||||||||||||||||| Sbjct: 127449 aacaaaaaatgctatgaaaga 127429
>gb|AC007727.2|F8K7 Arabidopsis thaliana chromosome 1 BAC F8K7 sequence, complete sequence Length = 98581 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 240 tcaaaaaccttttctgctatatacttttg 268 |||||||||||||| || ||||||||||| Sbjct: 37794 tcaaaaaccttttcggcgatatacttttg 37766
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 atttgttccttttcattgtca 509 ||||||||||||||||||||| Sbjct: 9445727 atttgttccttttcattgtca 9445747
>ref|NM_193971.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2268 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 387 ccactttcaggccagagaacatattgca 414 |||| ||||||||| ||||||||||||| Sbjct: 2000 ccacattcaggccaaagaacatattgca 1973
>gb|AC102873.10| Mus musculus chromosome 17, clone RP24-536C15, complete sequence Length = 155210 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 tttgttccttttcattgtca 509 |||||||||||||||||||| Sbjct: 112356 tttgttccttttcattgtca 112375
>gb|AY500826.1| Neocallimastix frontalis pyruvate formate lyase activating enzyme mRNA, complete cds Length = 1216 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gtgacagaattgaattccttccat 224 |||| ||||||||||||||||||| Sbjct: 792 gtgaaagaattgaattccttccat 815
>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence Length = 51685 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 acatgctgaacaaaaaatgc 181 |||||||||||||||||||| Sbjct: 5167 acatgctgaacaaaaaatgc 5186
>gb|AC125452.7| Mus musculus, clone RP23-43F6, complete sequence Length = 162045 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 ttccttttcattgtcatcct 513 |||||||||||||||||||| Sbjct: 97872 ttccttttcattgtcatcct 97891
>emb|AL607022.11| Human DNA sequence from clone RP11-323N10 on chromosome 10 Contains the 5' end of the gene for alpha-catenin-like protein (MGC26194) (VR22), a aldo-keto reductase family 1, member B10 (aldose reductase) (AKR1B10) pseudogene and a CpG island, complete sequence Length = 121210 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 117136 tttatttgttccttttcatt 117117
>emb|AL441964.4| Human DNA sequence from clone RP11-151G12 on chromosome X Contains a mortality factor 4 like 1 (MORF4L1) pseudogene and a novel pseudogene, complete sequence Length = 92775 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 56356 tttatttgttccttttcatt 56337
>emb|AL356739.11| Human DNA sequence from clone RP11-324P13 on chromosome 6, complete sequence Length = 98548 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cttttctgctatatactttt 267 |||||||||||||||||||| Sbjct: 640 cttttctgctatatactttt 659
>emb|AL139093.11| Human DNA sequence from clone RP11-440J4 on chromosome 6 Contains a serine palmitoyltransferase long chain base subunit 1 (SPTLC1) pseudogene, complete sequence Length = 131995 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 attttccatgtgactttctt 579 |||||||||||||||||||| Sbjct: 34753 attttccatgtgactttctt 34734
>emb|AL080314.29|HSDJ60O19 Human DNA sequence from clone RP1-60O19 on chromosome 6q16.2-21 Contains two novel genes (including FLJ22314), complete sequence Length = 161355 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 46062 tttatttgttccttttcatt 46081
>emb|AL023284.1|HS406A7 Human DNA sequence from clone RP3-406A7 on chromosome 6q23-24 Contains a pseudogene similar to Elongation Factor 1-Alpha (EF-1-ALPHA, Statin S1), a ribosomal protein, large, P1 (RPLP1) pseudogene, a novel pseudogene, a NADH dehydrogenase (ubiquinone) Fe-S protein 5 (15kD) (NADH-coenzyme Q reductase) (NDUFS5) pseudogene, the 3' end of the MAP7 gene for microtubule-associated protein 7 (EMAP115, E-MAP-115) and a CpG island, complete sequence Length = 167691 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 atacttttgatgcatggcag 279 |||||||||||||||||||| Sbjct: 141433 atacttttgatgcatggcag 141452
>emb|CR388028.12| Zebrafish DNA sequence from clone DKEYP-36B12 in linkage group 8, complete sequence Length = 173485 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaatctttcttttcgttta 25 |||||||||||||||||||| Sbjct: 131907 aaaatctttcttttcgttta 131888
>gb|AC129980.6| Homo sapiens chromosome 15, clone CTD-2529M12, complete sequence Length = 236391 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 69790 tttatttgttccttttcatt 69771
>emb|AL954177.4| Mouse DNA sequence from clone RP23-68I21 on chromosome 4, complete sequence Length = 73740 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 caaaacaagtacatacaaaa 94 |||||||||||||||||||| Sbjct: 27458 caaaacaagtacatacaaaa 27439
>gb|AC104420.2| Homo sapiens chromosome 15, clone RP11-945A13, complete sequence Length = 178756 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 17176 tttatttgttccttttcatt 17195
>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 19720 tttatttgttccttttcatt 19701
>gb|AC092868.2| Homo sapiens chromosome 15 clone RP11-356M20 map 15q21.3, complete sequence Length = 157533 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 111655 tttatttgttccttttcatt 111636
>gb|AC069304.7| Homo sapiens BAC clone RP11-632K21 from 7, complete sequence Length = 161247 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 127669 tttatttgttccttttcatt 127688
>gb|AC091748.3| Homo sapiens chromosome 15 clone RP11-99L18 map 15q21.3, complete sequence Length = 150294 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 83334 tttatttgttccttttcatt 83315
>gb|AC010235.7| Homo sapiens chromosome 5 clone CTC-339D2, complete sequence Length = 228600 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 48082 tttatttgttccttttcatt 48063
>gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C10, complete sequence Length = 143084 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ttgttccttttcattgtcat 510 |||||||||||||||||||| Sbjct: 122020 ttgttccttttcattgtcat 122039
>gb|AC006376.2|AC006376 Homo sapiens BAC clone RP11-386L3 from Y, complete sequence Length = 172007 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 157213 tttatttgttccttttcatt 157232
>gb|AC006962.2|AC006962 Homo sapiens PAC clone RP6-52J4 from Xq23, complete sequence Length = 64965 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccagattcacacttgcattt 70 |||||||||||||||||||| Sbjct: 6660 ccagattcacacttgcattt 6641
>gb|AC016412.12| Homo sapiens chromosome 8, clone RP11-9B18, complete sequence Length = 131000 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 cacttgcatttacaccaaaacaag 83 ||||| |||||||||||||||||| Sbjct: 53437 cactttcatttacaccaaaacaag 53414
>gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, complete sequence Length = 217781 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 ttgttccttttcattgtcat 510 |||||||||||||||||||| Sbjct: 90567 ttgttccttttcattgtcat 90586
>gb|AC092567.4| Homo sapiens BAC clone CTD-2010B19 from 2, complete sequence Length = 163496 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 40269 tttatttgttccttttcatt 40288
>dbj|AK100317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078P09, full insert sequence Length = 3375 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 387 ccactttcaggccagagaacatattgca 414 |||| ||||||||| ||||||||||||| Sbjct: 2766 ccacattcaggccaaagaacatattgca 2739
>dbj|AK069534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021N21, full insert sequence Length = 3324 Score = 40.1 bits (20), Expect = 9.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 205 cagaattgaattccttccatgcctcctgtagaatctcaaaaaccttttctgc 256 |||| ||||||| ||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 2842 cagagttgaatttgttccatgcctccttaagaatatcaaacaccttctctgc 2791
>gb|AC005002.2|AC005002 Homo sapiens clone DJ378P09, complete sequence Length = 119841 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 97541 tttatttgttccttttcatt 97522
>emb|CT571242.10| Mouse DNA sequence from clone RP24-82P13 on chromosome 17, complete sequence Length = 236078 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 tttgttccttttcattgtca 509 |||||||||||||||||||| Sbjct: 99741 tttgttccttttcattgtca 99722
>emb|AL121694.4|CNS01DS9 Human chromosome 14 DNA sequence BAC R-701B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175160 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tttatttgttccttttcatt 505 |||||||||||||||||||| Sbjct: 29561 tttatttgttccttttcatt 29580
>gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome 14, complete sequence Length = 181095 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 484 tctttatttgttccttttcattgt 507 ||||||||||||||||||| |||| Sbjct: 51253 tctttatttgttccttttccttgt 51230
>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3 Length = 200252 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccaaaacaagtacatacaaa 93 |||||||||||||||||||| Sbjct: 77616 ccaaaacaagtacatacaaa 77635
>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41 Length = 197419 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccaaaacaagtacatacaaa 93 |||||||||||||||||||| Sbjct: 31093 ccaaaacaagtacatacaaa 31112 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,307,506 Number of Sequences: 3902068 Number of extensions: 8307506 Number of successful extensions: 159224 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 158869 Number of HSP's gapped (non-prelim): 355 length of query: 724 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 701 effective length of database: 17,143,297,704 effective search space: 12017451690504 effective search space used: 12017451690504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)