ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd23c20 |
|---|---|
| Clone Library Name | barley_pub |
>GATA_MYCPN (P75534) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 478 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/66 (25%), Positives = 31/66 (46%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQNV 341 VR P C + F+ ++ +IS +GV APSLD + + + +++ D + Sbjct: 168 VRRPASICNIVGFKPTYGLISRNGVYPYAPSLDHVGIFARYVYDVALVSDEIIKHDKADF 227 Query: 340 YKEKKP 323 +K P Sbjct: 228 SAQKSP 233
>CIN8_YEAST (P27895) Kinesin-like protein CIN8 (Chromosome instability protein| 8) Length = 1000 Score = 30.8 bits (68), Expect = 2.4 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Frame = -1 Query: 445 TXIAPSLDTIDTSTYILKRSRMTRKQLMYQD-VQNVYKEK-KPLSLVLEKND 296 T I P+LD I L R+ + +LMY+D V+ + E K ++V+EK D Sbjct: 659 TNIQPNLDMIKNEVLTLMRTMQEKAELMYKDCVKKILNESPKFFNVVIEKID 710
>GATH_YEAST (Q03557) Probable glutamyl-tRNA(Gln) amidotransferase subunit A,| mitochondrial precursor (EC 6.3.5.-) (Glu-ADT subunit A) Length = 464 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/72 (33%), Positives = 34/72 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQNV 341 VR+P Y L F+ S+ +S GV + SLDT+ + K+ + RK D Sbjct: 155 VRLPACYGSVLGFKPSYGRLSRFGVIAYSQSLDTVG---ILSKKINVLRKVFHTLD---K 208 Query: 340 YKEKKPLSLVLE 305 Y K P SL +E Sbjct: 209 YDMKDPTSLSVE 220
>GATA_CHLMU (Q9PL37) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 491 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/59 (22%), Positives = 28/59 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQN 344 +R P +C + F+ S+ +S G+ SLD I T +++ + +D+++ Sbjct: 177 IRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDIKD 235
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Frame = -1 Query: 505 GYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQNVYKE-- 332 G A + S + + N+G +A + + I+ SR T +L D+ KE Sbjct: 939 GGAASAAAKESSIQVKNAGTIKLANAKFVTNKEGKIVLTSRNT--ELTVIDIFGRTKENY 996 Query: 331 KKPLSLVLEKNDTKHEGLKRTL*SWGPTT 245 K P VL KND G+ + +W P T Sbjct: 997 KVPYGAVLSKNDGAEVGVGEIVANWDPHT 1025
>ASHR1_ARATH (Q7XJS0) Histone-lysine N-methyltransferase ASHR1 (EC 2.1.1.43)| (ASH1-related protein 1) (Protein SET DOMAIN GROUP 37) Length = 480 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +1 Query: 268 EFASNLHALCHSFLKPKIVVSFP----CRHSAHPGTLVAFLSSLIV 393 +F+ N H++C S L+P+ + FP HS P ++ F + V Sbjct: 185 KFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAV 230
>GATA_MYCGE (P47345) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 477 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/66 (22%), Positives = 30/66 (45%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQNV 341 +R P C + F+ ++ +IS +GV APS+D + + + ++ D + Sbjct: 168 IRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDIAIVSDVVIKHDKTDF 227 Query: 340 YKEKKP 323 +K P Sbjct: 228 SSQKSP 233
>GFPT1_MOUSE (P47856) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] 1 (EC 2.6.1.16) (Hexosephosphate aminotransferase 1) (D-fructose-6-phosphate amidotransferase 1) (GFAT 1) (GFAT1) Length = 696 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 398 TETIKDDKKATNVPGCAECLQG 333 TETIK+ K+ VP +CLQG Sbjct: 640 TETIKNTKRTIKVPHSVDCLQG 661
>GATA_CHLTR (O84006) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 491 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILK 392 +R P +C + F+ S+ +S G+ SLD I T +++ Sbjct: 177 IRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVE 219
>GATA_CHLPN (Q9Z9G7) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 492 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTI 416 +R P +C + F+ S+ +S G+ A SLD I Sbjct: 177 IRQPAAFCGVVGFKPSYGAVSRYGLVAFASSLDQI 211
>GFPT1_HUMAN (Q06210) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] 1 (EC 2.6.1.16) (Hexosephosphate aminotransferase 1) (D-fructose-6-phosphate amidotransferase 1) (GFAT 1) (GFAT1) Length = 698 Score = 29.3 bits (64), Expect = 6.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 398 TETIKDDKKATNVPGCAECLQG 333 TETIK+ K+ VP +CLQG Sbjct: 642 TETIKNTKRTIKVPHSVDCLQG 663
>GATA_STAAW (Q8NVT3) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 485 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQN 344 +R P YC + + ++ +S G+ A SLD I T +K + + + + DV + Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237
>GATA_STAAS (Q6G833) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 485 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQN 344 +R P YC + + ++ +S G+ A SLD I T +K + + + + DV + Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237
>GATA_STAAN (P63489) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 485 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQN 344 +R P YC + + ++ +S G+ A SLD I T +K + + + + DV + Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237
>GATA_STAAM (P63488) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 485 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQN 344 +R P YC + + ++ +S G+ A SLD I T +K + + + + DV + Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237
>GATA_STAAC (Q5HEM2) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 485 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -1 Query: 520 VRVPGGYCXXLAFRLSHVVISNSGVTXIAPSLDTIDTSTYILKRSRMTRKQLMYQDVQN 344 +R P YC + + ++ +S G+ A SLD I T +K + + + + DV + Sbjct: 179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVND 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,028,500 Number of Sequences: 219361 Number of extensions: 1208928 Number of successful extensions: 2660 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2623 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2660 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
