ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22j18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113H11, full insert sequence Length = 3520 Score = 167 bits (84), Expect = 4e-38 Identities = 123/136 (90%) Strand = Plus / Minus Query: 365 gcagtctgttgcgccagctcgttcatcatggcctcgtcaaagaacttgttgatgctaaca 424 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 3075 gcagcctgctgcgccagctcgttcatcatggcctcatcaaagaacttgttgatgctcaca 3016 Query: 425 tcctcgctcatgcccttccttcgcctggtcttcaccatgaactcacgggcaaggtgttgg 484 ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| || || Sbjct: 3015 tcctcactcatgcccttccttcgcctagtcttcaccataaactcacgagcaagatgctgt 2956 Query: 485 atgggtgccggttcca 500 || ||||| ||||||| Sbjct: 2955 attggtgctggttcca 2940
>dbj|AK058674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H06, full insert sequence Length = 2055 Score = 167 bits (84), Expect = 4e-38 Identities = 123/136 (90%) Strand = Plus / Minus Query: 365 gcagtctgttgcgccagctcgttcatcatggcctcgtcaaagaacttgttgatgctaaca 424 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 1648 gcagcctgctgcgccagctcgttcatcatggcctcatcaaagaacttgttgatgctcaca 1589 Query: 425 tcctcgctcatgcccttccttcgcctggtcttcaccatgaactcacgggcaaggtgttgg 484 ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| || || Sbjct: 1588 tcctcactcatgcccttccttcgcctagtcttcaccataaactcacgagcaagatgctgt 1529 Query: 485 atgggtgccggttcca 500 || ||||| ||||||| Sbjct: 1528 attggtgctggttcca 1513
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 365 gcagtctgttgcgccagctcgttcatcatggcctcgtcaaagaacttgttgatgctaaca 424 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 23823452 gcagcctgctgcgccagctcgttcatcatggcctcatcaaagaacttgttgatgctcaca 23823511 Query: 425 tcctcgctcatgccct 440 ||||| |||||||||| Sbjct: 23823512 tcctcactcatgccct 23823527 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 438 ccttccttcgcctggtcttcaccatgaactcacgggcaaggtgttggatgggtgccggtt 497 ||||||||||||| ||||||||||| |||||||| ||||| || || || ||||| |||| Sbjct: 23823615 ccttccttcgcctagtcttcaccataaactcacgagcaagatgctgtattggtgctggtt 23823674 Query: 498 cca 500 ||| Sbjct: 23823675 cca 23823677
>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0556B08 Length = 136775 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 365 gcagtctgttgcgccagctcgttcatcatggcctcgtcaaagaacttgttgatgctaaca 424 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 63117 gcagcctgctgcgccagctcgttcatcatggcctcatcaaagaacttgttgatgctcaca 63176 Query: 425 tcctcgctcatgccct 440 ||||| |||||||||| Sbjct: 63177 tcctcactcatgccct 63192 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 438 ccttccttcgcctggtcttcaccatgaactcacgggcaaggtgttggatgggtgccggtt 497 ||||||||||||| ||||||||||| |||||||| ||||| || || || ||||| |||| Sbjct: 63280 ccttccttcgcctagtcttcaccataaactcacgagcaagatgctgtattggtgctggtt 63339 Query: 498 cca 500 ||| Sbjct: 63340 cca 63342
>ref|NM_001031501.1| Gallus gallus elongation factor Tu GTP binding domain containing 2 (EFTUD2), mRNA Length = 3457 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 398 tcgtcaaagaacttgttgatgctaacatcctcgctcatgcccttccttcgcctggtcttc 457 ||||| ||||||||| ||||||| ||||||||||||| ||||||||| |||| |||||| Sbjct: 2903 tcgtcgaagaacttgctgatgctcacatcctcgctcaagcccttcctgcgccgggtcttg 2844 Query: 458 accatgaactc 468 | ||||||||| Sbjct: 2843 atcatgaactc 2833
>emb|AJ851526.1| Gallus gallus mRNA for hypothetical protein, clone 4m11 Length = 3457 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 398 tcgtcaaagaacttgttgatgctaacatcctcgctcatgcccttccttcgcctggtcttc 457 ||||| ||||||||| ||||||| ||||||||||||| ||||||||| |||| |||||| Sbjct: 2903 tcgtcgaagaacttgctgatgctcacatcctcgctcaagcccttcctgcgccgggtcttg 2844 Query: 458 accatgaactc 468 | ||||||||| Sbjct: 2843 atcatgaactc 2833
>ref|XM_788372.1| PREDICTED: Strongylocentrotus purpuratus similar to 116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP-specific protein, 116 kDa) (U5-116 kDa) (LOC588702), mRNA Length = 2076 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 398 tcgtcaaagaacttgttgatgctaacatcctcgct 432 ||||||||||||||||||||||||||||||||||| Sbjct: 2021 tcgtcaaagaacttgttgatgctaacatcctcgct 1987
>ref|XM_791493.1| PREDICTED: Strongylocentrotus purpuratus similar to 116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP-specific protein, 116 kDa) (U5-116 kDa) (LOC591948), mRNA Length = 1228 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 398 tcgtcaaagaacttgttgatgctaacatcctcgct 432 ||||||||||||||||||||||||||||||||||| Sbjct: 920 tcgtcaaagaacttgttgatgctaacatcctcgct 886
>ref|NM_001030366.1| Xenopus tropicalis eftud2 protein (eftud2), mRNA Length = 3366 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 422 acatcctcgctcatgcccttccttcgcctggtcttcaccatgaactcacgggcaaggtgt 481 ||||||||||| | ||||||||| ||||| ||||| | ||||||||| | |||||||||| Sbjct: 2908 acatcctcgcttaggcccttcctacgccttgtctttatcatgaactccctggcaaggtgt 2849
>gb|BC090572.1| Xenopus tropicalis eftud2 protein, mRNA (cDNA clone MGC:69219 IMAGE:5307638), complete cds Length = 3366 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 422 acatcctcgctcatgcccttccttcgcctggtcttcaccatgaactcacgggcaaggtgt 481 ||||||||||| | ||||||||| ||||| ||||| | ||||||||| | |||||||||| Sbjct: 2908 acatcctcgcttaggcccttcctacgccttgtctttatcatgaactccctggcaaggtgt 2849
>gb|BC041724.1| Xenopus laevis U5 snRNP-specific protein, 116 kD, mRNA (cDNA clone MGC:52678 IMAGE:4682533), complete cds Length = 3330 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Minus Query: 422 acatcctcgctcatgcccttccttcgcctggtcttcaccatgaactcacgggcaaggtg 480 ||||||||||||| |||||||| ||||| ||||| | ||| ||||| | ||||||||| Sbjct: 2904 acatcctcgctcagccccttcctacgccttgtctttatcataaactctctggcaaggtg 2846
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 437 cccttccttcgcctggtcttca 458 |||||||||||||||||||||| Sbjct: 581719 cccttccttcgcctggtcttca 581740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gcaaattgcgtctccttgaa 258 |||||||||||||||||||| Sbjct: 1137447 gcaaattgcgtctccttgaa 1137466
>ref|XM_570208.1| Cryptococcus neoformans var. neoformans JEC21 116 kda u5 small nuclear ribonucleoprotein component (CND02170) partial mRNA Length = 3150 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 437 cccttccttcgcctggtcttca 458 |||||||||||||||||||||| Sbjct: 3000 cccttccttcgcctggtcttca 2979
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 35 aagaaaaaatcaaacaagaaaaggta 60 |||||||||||||| ||||||||||| Sbjct: 570324 aagaaaaaatcaaagaagaaaaggta 570299
>gb|AC159306.2| Mus musculus BAC clone RP23-206B2 from chromosome 14, complete sequence Length = 194660 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 35 aagaaaaaatcaaacaagaaaaggta 60 |||||||||||||| ||||||||||| Sbjct: 73177 aagaaaaaatcaaagaagaaaaggta 73152
>gb|AC146775.8| Medicago truncatula clone mth2-95g14, complete sequence Length = 139593 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 32 gtaaagaaaaaatcaaacaagaaaa 56 ||||||||| ||||||||||||||| Sbjct: 126721 gtaaagaaagaatcaaacaagaaaa 126697
>gb|AC138131.16| Medicago truncatula clone mth2-21h11, complete sequence Length = 127696 Score = 42.1 bits (21), Expect = 1.7 Identities = 51/61 (83%) Strand = Plus / Plus Query: 438 ccttccttcgcctggtcttcaccatgaactcacgggcaaggtgttggatgggtgccggtt 497 ||||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||| Sbjct: 78078 ccttcctacgccttgtttttaccataaattcacgggcaagatgctggattggtgcaggtt 78137 Query: 498 c 498 | Sbjct: 78138 c 78138
>emb|BX927275.8| Zebrafish DNA sequence from clone DKEY-108P14 in linkage group 23, complete sequence Length = 133912 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ttgtagtatgtaaagaaaaaa 43 ||||||||||||||||||||| Sbjct: 2487 ttgtagtatgtaaagaaaaaa 2467
>gb|AC027238.5| Homo sapiens chromosome 8, clone RP11-377F20, complete sequence Length = 193250 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcatcaaactacatcatcaag 355 ||||||||||||||||||||| Sbjct: 154322 tcatcaaactacatcatcaag 154342
>gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, complete sequence Length = 184547 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcatcaaactacatcatcaag 355 ||||||||||||||||||||| Sbjct: 30911 tcatcaaactacatcatcaag 30931
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ctcgttcatcatggcctcgtc 402 ||||||||||||||||||||| Sbjct: 2448609 ctcgttcatcatggcctcgtc 2448589
>gb|AC160061.6| Mus musculus 10 BAC RP24-496L10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174662 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gatggtacatacatgactaca 182 ||||||||||||||||||||| Sbjct: 41552 gatggtacatacatgactaca 41532
>gb|AC084644.1|CBRG45L10 Caenorhabditis briggsae cosmid G45L10, complete sequence Length = 46749 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaagaaaaaatcaaacaagaa 54 ||||||||||||||||||||| Sbjct: 5231 aaagaaaaaatcaaacaagaa 5251
>gb|AC084585.1|CBRG41C07 Caenorhabditis briggsae cosmid G41C07, complete sequence Length = 35417 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaagaaaaaatcaaacaagaa 54 ||||||||||||||||||||| Sbjct: 1419 aaagaaaaaatcaaacaagaa 1439
>emb|CR388224.11| Zebrafish DNA sequence from clone CH211-23L10 in linkage group 3, complete sequence Length = 130988 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 404 aagaacttgttgatgctaacatcctcgctcatgccct 440 ||||||||| |||| || ||||||||||||| ||||| Sbjct: 96215 aagaacttgctgatactgacatcctcgctcaagccct 96179
>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence Length = 208274 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 aaagaaaaaatcaaacaagaaaag 57 ||||||||||||||| |||||||| Sbjct: 170995 aaagaaaaaatcaaaaaagaaaag 170972
>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence Length = 182660 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 tcaaacaagaaaaggtatcatcat 67 ||||| |||||||||||||||||| Sbjct: 55491 tcaaaaaagaaaaggtatcatcat 55468
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 tcaaacaagaaaaggtatcatcat 67 ||||| |||||||||||||||||| Sbjct: 2102694 tcaaaaaagaaaaggtatcatcat 2102717
>ref|XM_361073.1| Magnaporthe grisea 70-15 hypothetical protein (MG03616.4) partial mRNA Length = 2382 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 425 tcctcgctcatgcccttccttcgcctggtctt 456 |||||||||| |||||||| ||||||||||| Sbjct: 2303 tcctcgctcagccccttcctgcgcctggtctt 2272
>gb|AC165425.2| Mus musculus BAC clone RP23-252G18 from chromosome 9, complete sequence Length = 217329 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aaaaaatcaaacaagaaaag 57 |||||||||||||||||||| Sbjct: 117015 aaaaaatcaaacaagaaaag 116996
>ref|XM_570152.1| Cryptococcus neoformans var. neoformans JEC21 NADH-ubiquinone oxidoreductase 51 kDa subunit (CND04070) partial mRNA Length = 1657 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gcaaattgcgtctccttgaa 258 |||||||||||||||||||| Sbjct: 1587 gcaaattgcgtctccttgaa 1606
>gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, complete sequence Length = 175181 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 aaagaaaaaatcaaacaagaaaag 57 ||||||||||||||| |||||||| Sbjct: 13294 aaagaaaaaatcaaaaaagaaaag 13271
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cagtctgttgcgccagctcg 385 |||||||||||||||||||| Sbjct: 4087797 cagtctgttgcgccagctcg 4087816
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 agaaaaaatcaaacaagaaa 55 |||||||||||||||||||| Sbjct: 500902 agaaaaaatcaaacaagaaa 500883
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aaaaaatcaaacaagaaaag 57 |||||||||||||||||||| Sbjct: 353766 aaaaaatcaaacaagaaaag 353747
>emb|BX640500.10| Zebrafish DNA sequence from clone RP71-86I11 in linkage group 9, complete sequence Length = 120013 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aaagaaaaaatcaaacaaga 53 |||||||||||||||||||| Sbjct: 46615 aaagaaaaaatcaaacaaga 46634
>gb|L19201.1|ECOUW87 E. coli chromosomal region from 87.2 to 89.2 minutes Length = 96484 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cagtctgttgcgccagctcg 385 |||||||||||||||||||| Sbjct: 51414 cagtctgttgcgccagctcg 51433
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 cagtctgttgcgccagctcg 385 |||||||||||||||||||| Sbjct: 3546907 cagtctgttgcgccagctcg 3546888
>gb|DQ397864.1| Cenarchaeum symbiosum clone C21B03, complete sequence Length = 40572 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ggcctcgtcaaagaacttgt 413 |||||||||||||||||||| Sbjct: 5951 ggcctcgtcaaagaacttgt 5932
>gb|DQ397850.1| Cenarchaeum symbiosum clone C09B07, complete sequence Length = 40824 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 ggcctcgtcaaagaacttgt 413 |||||||||||||||||||| Sbjct: 667 ggcctcgtcaaagaacttgt 686
>gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequence Length = 41295 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ggcctcgtcaaagaacttgt 413 |||||||||||||||||||| Sbjct: 26336 ggcctcgtcaaagaacttgt 26317
>gb|DQ397551.1| Cenarchaeum symbiosum clone C05D09, complete sequence Length = 43893 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ggcctcgtcaaagaacttgt 413 |||||||||||||||||||| Sbjct: 4097 ggcctcgtcaaagaacttgt 4078
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ttgttgatgctaacatcctc 429 |||||||||||||||||||| Sbjct: 95400 ttgttgatgctaacatcctc 95419
>gb|AC016396.6| Homo sapiens chromosome 10 clone RP11-179B15, complete sequence Length = 151766 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 aaagaaaaaatcaaacaagaaaag 57 |||||||||||||||| ||||||| Sbjct: 39255 aaagaaaaaatcaaactagaaaag 39278
>gb|AC012676.5| Homo sapiens chromosome 16 clone RP11-295D4, complete sequence Length = 172071 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 aaagaaaaaatcaaacaagaaaag 57 |||||||||| ||||||||||||| Sbjct: 115243 aaagaaaaaaacaaacaagaaaag 115220
>gb|AC154713.2| Mus musculus BAC clone RP23-129G17 from chromosome 13, complete sequence Length = 197815 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 gaaaaaatcaaacaagaaaaggta 60 |||||||| ||||||||||||||| Sbjct: 11808 gaaaaaatgaaacaagaaaaggta 11785
>dbj|AK042307.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630080N16 product:leucine zipper transcription factor-like 1, full insert sequence Length = 1922 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aaaaaatcaaacaagaaaag 57 |||||||||||||||||||| Sbjct: 1807 aaaaaatcaaacaagaaaag 1788
>gb|AC011815.7|AC011815 Homo sapiens chromosome , clone RP11-158H5, complete sequence Length = 156244 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tcatccctggagatgtcatc 83 |||||||||||||||||||| Sbjct: 103919 tcatccctggagatgtcatc 103938
>gb|AC154552.2| Mus musculus BAC clone RP23-414P13 from 13, complete sequence Length = 187806 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 gaaaaaatcaaacaagaaaaggta 60 |||||||| ||||||||||||||| Sbjct: 36939 gaaaaaatgaaacaagaaaaggta 36962
>emb|BX322637.7| Zebrafish DNA sequence from clone DKEY-22A1 in linkage group 9, complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aaagaaaaaatcaaacaaga 53 |||||||||||||||||||| Sbjct: 126424 aaagaaaaaatcaaacaaga 126405
>gb|AC103618.6| Mus musculus chromosome 1, clone RP24-202B6, complete sequence Length = 141016 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggtatcatcatccctgg 73 |||||||||||||||||||| Sbjct: 120671 aaaggtatcatcatccctgg 120690
>emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D10, complete sequence Length = 171446 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aaaaaatcaaacaagaaaag 57 |||||||||||||||||||| Sbjct: 85940 aaaaaatcaaacaagaaaag 85959
>gb|AC140243.2| Mus musculus BAC clone RP23-470F3 from 9, complete sequence Length = 201295 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 taaagaaaaaatcaaacaagaaaa 56 ||||||||||||||||||| |||| Sbjct: 121174 taaagaaaaaatcaaacaataaaa 121151
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cagtctgttgcgccagctcg 385 |||||||||||||||||||| Sbjct: 4957174 cagtctgttgcgccagctcg 4957193
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cagtctgttgcgccagctcg 385 |||||||||||||||||||| Sbjct: 4888410 cagtctgttgcgccagctcg 4888429
>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete sequence Length = 206168 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgtagtatgtaaagaaaaaa 43 |||||||||||||||||||| Sbjct: 53273 tgtagtatgtaaagaaaaaa 53292
>emb|AL627134.9| Mouse DNA sequence from clone RP23-71I19 on chromosome 4, complete sequence Length = 172418 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aaaaaatcaaacaagaaaag 57 |||||||||||||||||||| Sbjct: 164257 aaaaaatcaaacaagaaaag 164276
>emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on chromosome 9, complete sequence Length = 110444 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aaaaaatcaaacaagaaaag 57 |||||||||||||||||||| Sbjct: 53257 aaaaaatcaaacaagaaaag 53276
>dbj|AP003117.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1958F4 Length = 152176 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaaaatcaaacaagaaaagg 58 |||||||||||||||||||| Sbjct: 60509 aaaaatcaaacaagaaaagg 60490
>dbj|AP003111.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1255G1 Length = 171035 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaaaatcaaacaagaaaagg 58 |||||||||||||||||||| Sbjct: 157170 aaaaatcaaacaagaaaagg 157151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,560,875 Number of Sequences: 3902068 Number of extensions: 4560875 Number of successful extensions: 100311 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100055 Number of HSP's gapped (non-prelim): 256 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
