>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Arabidopsis|
           protein 1) (RAP-1) (Basic helix-loop-helix protein 6)
           (bHLH6) (AtbHLH006) (rd22BP1)
          Length = 623

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 20/157 (12%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETE--------------- 518
           KLNQRFYALRAVVPN+SKMDKASLLGDAIAYI +L+ K+   E+E               
Sbjct: 463 KLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLEL 522

Query: 517 --RERFLESGMVDPRERHPRP---EVDIQVVQDEVLVRVMSPLENHPVKKVFEAFEEADV 353
             R+     G +       +P   E++++++  + ++RV S   NHP  ++  A  + ++
Sbjct: 523 AGRKASASGGDMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLEL 582

Query: 352 RVGESKLTGNNGTVVHSFIIKCPGSEQQTREKVIAAM 242
            V  + ++  N  ++    +K  G    T+E++ A++
Sbjct: 583 EVNHASMSVVNDLMIQQATVKM-GFRIYTQEQLRASL 618

>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop-helix|
           protein 42) (bHLH42) (AtbHLH042)
          Length = 518

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDME-TERERFLESGMVDPRE 476
           KLN++F  LR++VP ++KMDK S+LGD IAY+  L+K++ ++E T  E+  +       +
Sbjct: 374 KLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQ--QHKRTRTCK 431

Query: 475 RHPRPEVDIQVVQDEVLVRVMSPLENHPVKKVFEAFEEADVRVGESKLTGNNGTVVHSFI 296
           R    EV++ +++++VL+ +     +  +  + +   E  +       + N+    H F 
Sbjct: 432 RKTSEEVEVSIIENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTSVND----HDF- 486

Query: 295 IKCPGSEQQTREKV------IAAMSRAMSSV 221
                 E + R KV      IA + RA+  V
Sbjct: 487 ------EAEIRAKVRGKKASIAEVKRAIHQV 511

>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF expression 1)|
           (Basic helix-loop-helix protein 116) (bHLH116)
           (AtbHLH116)
          Length = 494

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 27/47 (57%), Positives = 36/47 (76%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERE 512
           KLN R Y LR+VVP ISKMD+AS+LGDAI Y+ +L +++ D+  E E
Sbjct: 318 KLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELE 364

>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic|
           helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
           (AtMyc-146)
          Length = 596

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 39/47 (82%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERE 512
           KLN+RF  LR+++P+ISK+DK S+L D I Y+ DLQK+++++E+ RE
Sbjct: 416 KLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELESCRE 462

>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein|
          Length = 610

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 19/47 (40%), Positives = 39/47 (82%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERE 512
           KLN+ F  L++++P+I +++KAS+L + IAY+ +LQ++++++E+ RE
Sbjct: 427 KLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELESSRE 473

>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein|
          Length = 612

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 19/47 (40%), Positives = 39/47 (82%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERE 512
           KLN+ F  L++++P+I +++KAS+L + IAY+ +LQ++++++E+ RE
Sbjct: 429 KLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELESSRE 475

>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated|
           protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
           (AtbHLH008)
          Length = 524

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 37/57 (64%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERERFLESGMVDP 482
           ++N++  AL+ ++PN +K+DKAS+L +AI Y+  LQ +++ M      +L   ++ P
Sbjct: 358 RINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMFP 414

>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic helix-loop-helix|
           protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2)
          Length = 430

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERERFLESGMVDPRER 473
           ++N+R  AL+ ++P+ SK DKAS+L +AI Y+  LQ +L+ M      ++ SGM      
Sbjct: 272 RINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM------WMGSGMAAAAAS 325

Query: 472 HP------RPEVDIQVVQDEVL-----VRVMSPLENHP 392
            P      +P+  I+ +Q  V      V   S ++N+P
Sbjct: 326 APMMFPGVQPQQFIRQIQSPVQLPRFPVMDQSAIQNNP 363

>SPT_ARATH (Q9FUA4) Protein SPATULA|
          Length = 373

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 16/40 (40%), Positives = 31/40 (77%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLK 533
           ++N++  AL++++PN +K DKAS+L +AI Y+  LQ +++
Sbjct: 212 RINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 251

>BIM1_ARATH (Q9LEZ3) Transcription factor BIM1 (BES1-interacting Myc-like|
           protein 1) (Transcription factor EN 126) (AtbHLH 46)
          Length = 530

 Score = 36.6 bits (83), Expect = 0.067
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNI-SKMDKASLLGDAIAYITDLQKK 539
           K+N RF  LR ++PN   K DKAS L + I YI  LQ+K
Sbjct: 291 KINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEK 329

>BIM2_ARATH (Q9CAA4) Putative transcription factor BIM2 (BES1-interacting|
           Myc-like protein 2) (Transcription factor EN 125)
           (AtbHLH 102)
          Length = 311

 Score = 36.2 bits (82), Expect = 0.088
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNI-SKMDKASLLGDAIAYITDLQKKLKDME 524
           K+N+RF  LR ++PN   K D AS L + I Y+  LQ+K++  E
Sbjct: 60  KINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQKYE 103

>LAX_ORYSA (Q7XAQ6) Transcription factor LAX PANICLE|
          Length = 215

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKL 536
           +++ RF  LR++VP  SKMD  S+L  AI Y+  L+ ++
Sbjct: 55  RISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV 93

>GLTA_BACSU (P39812) Glutamate synthase [NADPH] large chain (EC 1.4.1.13)|
           (NADPH-GOGAT)
          Length = 1520

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -2

Query: 646 NQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDMETERERFLESGM 491
           N++FYAL+ +V    K  K  +L     +  DL++ LKDM T+ E+ +  G+
Sbjct: 566 NEQFYALKTIVHPDLKSQKIDVL-----FSEDLERGLKDMFTQAEKAISQGV 612

>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)|
          Length = 1094

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -2

Query: 574 DAIAYITDLQKKL----KDMETERERFLESGMVDPRERHPRPE 458
           D++A I +L+K+L    K++ET RERF ES  +    R P PE
Sbjct: 420 DSMAKIAELEKQLSQARKELETLRERFSESTPMGTSRRIPEPE 462

>SELU_ECOL6 (Q8FK67) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 361

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 219 YTELMARDIAAITFSLVCCSEPGHLMMKECTTVPLLPVSFDSPTRTSASSNASKTFFTG- 395
           Y EL AR  AA+T  L   S  GHL       VPLL   +D   R      A K  F G 
Sbjct: 298 YNELAARLDAALTTQLTTGSTDGHL----AWLVPLLEEYYDPMYRYQLEKKAEKVVFRGE 353

Query: 396 WFSNG 410
           W  +G
Sbjct: 354 WAGSG 358

>FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) (Leukocyte|
           formin) (CLL-associated antigen KW-13)
          Length = 1100

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -2

Query: 574 DAIAYITDLQKKL----KDMETERERFLESGMVDPRERHPRPE 458
           +++A I +L+K+L    K++ET RERF ES  +    R P PE
Sbjct: 421 ESMAKIAELEKQLSQARKELETLRERFSESTAMGASRRPPEPE 463

>IND_ARATH (O81313) INDEHISCENT protein|
          Length = 169

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 13/43 (30%), Positives = 30/43 (69%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNISKMDKASLLGDAIAYITDLQKKLKDME 524
           +++++   L+ +VP  +KMD AS+L +AI Y   L+++++ ++
Sbjct: 104 RISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 146

>BHLH8_RAT (P70562) Class B basic helix-loop-helix protein 8 (bHLHB8) (Muscle,|
           intestine and stomach expression 1) (MIST-1)
          Length = 197

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNI---SKMDKASLLGDAIAYITDLQKKLKDMETERERFLESGMVDP 482
           KLN  F ALR V+P++    K+ K   L  A  YI  L   +  M + R   LE+    P
Sbjct: 87  KLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMSSSRLPGLEAPGPAP 146

Query: 481 RER---HPRPEVDIQVVQDEVLVRVMSPLENHP 392
             +   H   +   Q  Q +V   V+   E+ P
Sbjct: 147 GPKLYQHYHHQQQQQQQQQQVAGAVLGVTEDQP 179

>SELU_ECOLI (P33667) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 364

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 23/59 (38%), Positives = 25/59 (42%)
 Frame = +3

Query: 219 YTELMARDIAAITFSLVCCSEPGHLMMKECTTVPLLPVSFDSPTRTSASSNASKTFFTG 395
           Y EL AR  AA+T  L   S  GHL       VPLL   +D   R      A K  F G
Sbjct: 298 YNELAARLDAALTTQLTTGSTDGHL----AWLVPLLEEYYDPMYRYQLEKKAEKVVFRG 352

>SELU_ECO57 (Q8XCZ2) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 364

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 23/59 (38%), Positives = 25/59 (42%)
 Frame = +3

Query: 219 YTELMARDIAAITFSLVCCSEPGHLMMKECTTVPLLPVSFDSPTRTSASSNASKTFFTG 395
           Y EL AR  AA+T  L   S  GHL       VPLL   +D   R      A K  F G
Sbjct: 298 YNELAARLDAALTTQLTTGSTDGHL----AWLVPLLEEYYDPMYRYQLEKKAEKVVFRG 352

>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)|
          Length = 1609

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
 Frame = +3

Query: 333 SFDSPTRTSASSNASKTFFTG--WFSNGDITRTRTSSCTTWMSTSGLGCRSLGSTIPDXX 506
           SF++PT TS+S   S +  T   + S  DI    TSS    +STS        ST+    
Sbjct: 80  SFEAPTETSSSYAVSSSLITSDTFSSYSDIFDEETSSL---ISTSAASSEKASSTL---- 132

Query: 507 XXXXXXXXXXXXXXXXXMYAIASPSREALSIFEMLGTTALNA*NRWLSF 653
                               + +PS  +L     L  T++N    W SF
Sbjct: 133 -SSTAQPHRTSHSSSSFELPVTAPSSSSLPSSTSLTFTSVNPSQSWTSF 180

>BHLH8_MOUSE (Q9QYC3) Class B basic helix-loop-helix protein 8 (bHLHB8) (Muscle,|
           intestine and stomach expression 1) (MIST-1)
          Length = 197

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
 Frame = -2

Query: 652 KLNQRFYALRAVVPNI---SKMDKASLLGDAIAYITDLQKKLKDMETERERFLESGMVDP 482
           KLN  F ALR V+P++    K+ K   L  A  YI  L   +  M + R   LE+    P
Sbjct: 87  KLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMSSSRLPGLEAPGPAP 146

Query: 481 RER---HPRPEVDIQVVQDEVLVRVMSPLENHP 392
             +   H   +   Q  Q +V   ++   E+ P
Sbjct: 147 GPKLYQHYHHQQQQQQQQQQVAGAMLGVTEDQP 179

>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc)
          Length = 943

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 445 PGCQPLV*GVAPLDPPYQTQEIVLSPSP 528
           P C P+  G++PL  PY +Q++ + P P
Sbjct: 713 PTCGPVSQGLSPLPRPYYSQQLAMPPDP 740

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 32)
            (Ubiquitin-specific-processing protease 32)
            (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 315  VPLLPVSFDSPTRTSASSNASKTFFTGWFSNGDITR 422
            VP+ P+S  SPT+T  SS+ S        +NGD+ R
Sbjct: 999  VPVSPISASSPTQTDFSSSPSTNEMFTLTTNGDLPR 1034

>RBN_YERPS (Q66GF5) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)|
          Length = 294

 Score = 25.0 bits (53), Expect(2) = 6.5
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 208 STDSTLSS-WRETLQRSLFPSFAV 276
           S DS L+  WR  +QRSL  SFAV
Sbjct: 119 SVDSVLNIIWRSKIQRSLVFSFAV 142



 Score = 23.5 bits (49), Expect(2) = 6.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 374 FKDLLYWMVLQWRHNSNKNLVLHHLDVNLWSRVSLPWIHHTRLKKSFSLRLHIFELLL 547
           F   +YWMVL         LV   + ++ +  +SL W+ H R+       L +F LL+
Sbjct: 138 FSFAVYWMVL----TLGPILVGASMVISSYL-LSLHWLAHARVDSMIDEILRVFPLLI 190

>RBN_YERPE (Q8ZJR1) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)|
          Length = 294

 Score = 25.0 bits (53), Expect(2) = 6.5
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 208 STDSTLSS-WRETLQRSLFPSFAV 276
           S DS L+  WR  +QRSL  SFAV
Sbjct: 119 SVDSVLNIIWRSKIQRSLVFSFAV 142



 Score = 23.5 bits (49), Expect(2) = 6.5
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 374 FKDLLYWMVLQWRHNSNKNLVLHHLDVNLWSRVSLPWIHHTRLKKSFSLRLHIFELLL 547
           F   +YWMVL         LV   + ++ +  +SL W+ H R+       L +F LL+
Sbjct: 138 FSFAVYWMVL----TLGPILVGASMVISSYL-LSLHWLAHARVDSMIDEILRVFPLLI 190

>SNX23_HUMAN (Q96L93) Kinesin-like motor protein C20orf23 (Sorting nexin 23)|
          Length = 1317

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -2

Query: 550 LQKKLKDMETERERFLESGMVDPRE---RHPRPEVDIQVVQDEVLVRVMSPLENHPVKKV 380
           ++ KLKD+  E+E+F E  + + +E   +  R E +  +   E L R +  L N+   + 
Sbjct: 665 IENKLKDLLAEKEKFEEERLREQQEIELQKKRQEEETFLRVQEELQR-LKELNNNEKAEK 723

Query: 379 FEAFEEAD 356
           F+ F+E D
Sbjct: 724 FQIFQELD 731


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,177,666
Number of Sequences: 219361
Number of extensions: 2101393
Number of successful extensions: 6495
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6492
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)