ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, parti... 535 e-149
2gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like prot... 466 e-128
3gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete... 248 8e-63
4ref|XM_550413.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
6dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
7dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
8dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
9gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.23
10gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24,... 42 0.91
11gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock prote... 40 3.6
12gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome... 40 3.6
13gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG... 40 3.6
14gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG... 40 3.6
15gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 1... 40 3.6
16gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, c... 40 3.6
17gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Can... 40 3.6
18gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Canc... 40 3.6
19gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 ... 40 3.6 
>gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, partial cds
          Length = 2900

 Score =  535 bits (270), Expect = e-149
 Identities = 270/270 (100%)
 Strand = Plus / Minus

                                                                        
Query: 8    cggacatcttactgttacatcatgaatacaagttacagcacaagcagttcaatatgcttg 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2852 cggacatcttactgttacatcatgaatacaagttacagcacaagcagttcaatatgcttg 2793

                                                                        
Query: 68   aacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagctccgtatgatt 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 aacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagctccgtatgatt 2733

                                                                        
Query: 128  gggaacatcagctaatatacatcacatcatggggggcagactgggaatggaaagccatcc 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2732 gggaacatcagctaatatacatcacatcatggggggcagactgggaatggaaagccatcc 2673

                                                                        
Query: 188  ttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgctcgcaccaa 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2672 ttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgctcgcaccaa 2613

                                          
Query: 248  ctgtcaagtgttgctgattgtcagcttcaa 277
            ||||||||||||||||||||||||||||||
Sbjct: 2612 ctgtcaagtgttgctgattgtcagcttcaa 2583
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>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene,
            complete cds
          Length = 7682

 Score =  466 bits (235), Expect = e-128
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                        
Query: 43   cagcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacac 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 cagcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacac 7622

                                                                        
Query: 103  cgcgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggg 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 cgcgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggg 7562

                                                                        
Query: 163  gcagactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctg 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 gcagactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctg 7502

                                                                   
Query: 223  accatgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaa 277
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7501 accatgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaa 7447
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>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds
          Length = 4012

 Score =  248 bits (125), Expect = 8e-63
 Identities = 141/145 (97%), Gaps = 1/145 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    cggacatcttactgttacatcatgaatacaagttacagcacaagcagtt-caatatgctt 66
            |||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3956 cggacatctttcggttacatcatgaatacaagttacagcacaagcagtttcaatatgctt 3897

                                                                        
Query: 67   gaacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagctccgtatgat 126
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3896 gaacatctaacgtcagattgcaagttaaaatcacaccgggggagcaaagctccgtatgat 3837

                                     
Query: 127  tgggaacatcagctaatatacatca 151
            |||||||||||||||||||||||||
Sbjct: 3836 tgggaacatcagctaatatacatca 3812



 Score =  172 bits (87), Expect = 4e-40
 Identities = 93/95 (97%)
 Strand = Plus / Minus

                                                                        
Query: 179  aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 3716

                                               
Query: 239  tcgcaccaactgtcaagtgttgctgattgtcagct 273
            |||| ||||||||||||||| ||||||||||||||
Sbjct: 3715 tcgcgccaactgtcaagtgtcgctgattgtcagct 3681
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>ref|XM_550413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4184

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 33   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 82
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4155 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4105



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  ttgggaacatcagctaatat 145
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                  
Query: 33      atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 82
               |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4328490 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4328540



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     ttgggaacatcagctaatat 145
               ||||||||||||||||||||
Sbjct: 4328604 ttgggaacatcagctaatat 4328623
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                 
Query: 33     atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 82
              |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 108260 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 108310



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ttgggaacatcagctaatat 145
              ||||||||||||||||||||
Sbjct: 108374 ttgggaacatcagctaatat 108393
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>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full
            insert sequence
          Length = 4252

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 33   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 82
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4124 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4074



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  ttgggaacatcagctaatat 145
            ||||||||||||||||||||
Sbjct: 4010 ttgggaacatcagctaatat 3991
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>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full
            insert sequence
          Length = 4185

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 33   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 82
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4155 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4105



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  ttgggaacatcagctaatat 145
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 220     ctgaccatgcagcaactgctcg 241
               ||||||||||||||||||||||
Sbjct: 2364775 ctgaccatgcagcaactgctcg 2364754
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>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence
          Length = 97697

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 35    acaagttacagcacaagcagttcaa 59
             |||||| ||||||||||||||||||
Sbjct: 38227 acaagtcacagcacaagcagttcaa 38251
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>gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1
             (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3),
             putative chloroquine resistance transporter (crt), CG9
             (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7)
             genes, complete cds
          Length = 47573

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tgggaacatcagctaatata 146
             ||||||||||||||||||||
Sbjct: 30343 tgggaacatcagctaatata 30362
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>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence
          Length = 162162

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tgaatacaagttacagcaca 49
             ||||||||||||||||||||
Sbjct: 22393 tgaatacaagttacagcaca 22412
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>gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  tgggaacatcagctaatata 146
            ||||||||||||||||||||
Sbjct: 2118 tgggaacatcagctaatata 2137
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>gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  tgggaacatcagctaatata 146
            ||||||||||||||||||||
Sbjct: 2140 tgggaacatcagctaatata 2159
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>gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 13, complete sequence
          Length = 215256

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 183    catccttgagcaagggattaattagccatcct 214
              ||||||| || |||||||| ||||||||||||
Sbjct: 139265 catccttaagtaagggattcattagccatcct 139296
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>gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, complete cds
          Length = 2820

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  tgggaacatcagctaatata 146
            ||||||||||||||||||||
Sbjct: 1001 tgggaacatcagctaatata 1020
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>gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170093

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    aactgtcaagtgttgctgat 265
              ||||||||||||||||||||
Sbjct: 141816 aactgtcaagtgttgctgat 141835
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>gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155839

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   aactgtcaagtgttgctgat 265
             ||||||||||||||||||||
Sbjct: 67697 aactgtcaagtgttgctgat 67716
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>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete
             sequence
          Length = 585533

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    agcacaagcagttcaatatg 63
             ||||||||||||||||||||
Sbjct: 12103 agcacaagcagttcaatatg 12084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,058,357
Number of Sequences: 3902068
Number of extensions: 2058357
Number of successful extensions: 33929
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33869
Number of HSP's gapped (non-prelim): 54
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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