| Clone Name | rbasd21k06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 552 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Minus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 545 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 486 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 426 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 425 agtccatactcatgcc 410
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 833243 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 833302 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 833303 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 833362 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 833363 agtccatactcatgcc 833378
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 29237405 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 29237464 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29237465 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 29237524 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 29237525 agtccatactcatgcc 29237540
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 16268 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 16327 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16328 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 16387 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 16388 agtccatactcatgcc 16403
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 83192 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 83251 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83252 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 83311 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 83312 agtccatactcatgcc 83327
>dbj|AK102719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105F22, full insert sequence Length = 1143 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Minus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 566 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 507 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 447 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 446 agtccatactcatgcc 431
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Plus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 833243 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 833302 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 833303 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 833362 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 833363 agtccatactcatgcc 833378
>emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79383 Score = 198 bits (100), Expect = 1e-47 Identities = 127/136 (93%) Strand = Plus / Minus Query: 384 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 443 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 34681 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 34622 Query: 444 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 503 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34621 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 34562 Query: 504 aatccatactcatgcc 519 | |||||||||||||| Sbjct: 34561 agtccatactcatgcc 34546
>dbj|AK103903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150L19, full insert sequence Length = 2571 Score = 184 bits (93), Expect = 2e-43 Identities = 114/121 (94%) Strand = Plus / Minus Query: 399 aaataaggcccgggcttgataggataaggataaaggtagccctctggccgagaaaatcca 458 |||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| ||| Sbjct: 2567 aaataaggaccaggcttaataggataaggataaaggtagccttccggccgagaaaaccca 2508 Query: 459 gcttcattcatgcggtcactgagcacatgtagtataggttttttcaatccatactcatgc 518 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2507 gcttcattcatgcggtcactgagcacatgtagtataggttttttcagtccatactcatgc 2448 Query: 519 c 519 | Sbjct: 2447 c 2447
>emb|CT963112.1| Medicago truncatula chromosome 5 clone mth2-117d22, COMPLETE SEQUENCE Length = 118597 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 28 tatataaatatttcaagacaacaataaaat 57 |||||| ||||||||||||||||| ||||| Sbjct: 63501 tatatatatatttcaagacaacaagaaaat 63530
>gb|AC074281.20| Homo sapiens X BAC RP11-66N5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 137628 Score = 42.1 bits (21), Expect = 1.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 22 atatnctatataaatatttcaagacaacaataaaat 57 |||| |||||||||||||| |||||| | ||||||| Sbjct: 33531 atattctatataaatatttaaagacatctataaaat 33496
>gb|AC104380.3| Homo sapiens chromosome 8, clone CTD-2342C1, complete sequence Length = 159643 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 caattgccttcttcttttatg 398 ||||||||||||||||||||| Sbjct: 34142 caattgccttcttcttttatg 34122
>gb|AC017028.11| Homo sapiens BAC clone RP11-275G7 from 2, complete sequence Length = 201971 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cttcagagctctggggacaaa 215 ||||||||||||||||||||| Sbjct: 115497 cttcagagctctggggacaaa 115517
>dbj|AP002979.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1057H12 Length = 153647 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 caattgccttcttcttttatg 398 ||||||||||||||||||||| Sbjct: 53659 caattgccttcttcttttatg 53679
>dbj|AP006658.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27P02, TM0343, complete sequence Length = 92507 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 atcttaaatttgattttgtaa 240 ||||||||||||||||||||| Sbjct: 78478 atcttaaatttgattttgtaa 78458
>gb|DQ366724.1| Uncultured Prochlorococcus marinus clone HF10-11H7 genomic sequence Length = 34000 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 taaatttgattttgtaagtt 243 |||||||||||||||||||| Sbjct: 20327 taaatttgattttgtaagtt 20308
>emb|AL450108.12| Human DNA sequence from clone RP11-456E1 on chromosome X Contains the CDX4 gene for caudal type homeo box transcription factor 4, a mortality factor 4 like 1 (MORF4L1) pseudogene, a mitogen-activated protein kinase kinase 4(LOC139201, MAP2K4) pseudogene and a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 188281 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aataaaatgggccagtagat 69 |||||||||||||||||||| Sbjct: 139228 aataaaatgggccagtagat 139209
>emb|CR788256.3| Zebrafish DNA sequence from clone DKEY-4M11 in linkage group 2, complete sequence Length = 52648 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atttcaagacaacaataaaa 56 |||||||||||||||||||| Sbjct: 14385 atttcaagacaacaataaaa 14366
>dbj|AK127771.1| Homo sapiens cDNA FLJ45872 fis, clone OCBBF3005843 Length = 4143 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctatataaatatttcaagacaaca 50 ||||||||||||||||| |||||| Sbjct: 1081 ctatataaatatttcaaaacaaca 1104
>gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, complete sequence Length = 142225 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctatataaatatttcaagacaaca 50 ||||||||||||||||| |||||| Sbjct: 15049 ctatataaatatttcaaaacaaca 15072
>gb|AC093521.3| Homo sapiens chromosome 5 clone RP11-152P24, complete sequence Length = 143970 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 tcttaaatttgattttgtaagttg 244 |||||||||| ||||||||||||| Sbjct: 77652 tcttaaatttaattttgtaagttg 77629
>gb|AC084091.5| Homo sapiens chromosome 8, clone CTD-2532E22, complete sequence Length = 183486 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 aatatttcaagacaacaataaaat 57 |||| ||||||||||||||||||| Sbjct: 174457 aataattcaagacaacaataaaat 174434
>gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, complete sequence Length = 180650 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 271 actgcgtagtgtatacaagaaaaactag 298 ||||| |||||||||||| ||||||||| Sbjct: 21984 actgcttagtgtatacaaaaaaaactag 21957
>ref|XM_940037.1| PREDICTED: Homo sapiens FLJ45872 protein (FLJ45872), mRNA Length = 4137 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctatataaatatttcaagacaaca 50 ||||||||||||||||| |||||| Sbjct: 1078 ctatataaatatttcaaaacaaca 1101
>ref|XM_376795.2| PREDICTED: Homo sapiens FLJ45872 protein (FLJ45872), mRNA Length = 4134 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ctatataaatatttcaagacaaca 50 ||||||||||||||||| |||||| Sbjct: 1075 ctatataaatatttcaaaacaaca 1098
>gb|AC046195.9| Homo sapiens chromosome 8, clone RP11-238K6, complete sequence Length = 161507 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ctatataaatatttcaagacaaca 50 ||||||||||||||||| |||||| Sbjct: 16249 ctatataaatatttcaaaacaaca 16226
>gb|AC021000.9| Homo sapiens chromosome 8, clone RP11-381I2, complete sequence Length = 192592 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 aatatttcaagacaacaataaaat 57 |||| ||||||||||||||||||| Sbjct: 51067 aataattcaagacaacaataaaat 51044
>gb|AC010490.6| Homo sapiens chromosome 5 clone CTD-2333M24, complete sequence Length = 127188 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 271 actgcgtagtgtatacaagaaaaactag 298 ||||| |||||||||||| ||||||||| Sbjct: 118982 actgcttagtgtatacaaaaaaaactag 118955
>gb|AC008331.7|AC008331 Drosophila melanogaster, chromosome 2L, region 29D-29E, BAC clone BACR02B16, complete sequence Length = 186938 Score = 40.1 bits (20), Expect = 7.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 tatnctatataaatatttcaagacaac 49 ||| ||||||||||| ||||||||||| Sbjct: 60198 tatactatataaataattcaagacaac 60172
>gb|AE003621.3| Drosophila melanogaster chromosome 2L, section 30 of 83 of the complete sequence Length = 308031 Score = 40.1 bits (20), Expect = 7.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 23 tatnctatataaatatttcaagacaac 49 ||| ||||||||||| ||||||||||| Sbjct: 279838 tatactatataaataattcaagacaac 279812
>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete sequence Length = 174127 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ctttcaaactccccctcaac 272 |||||||||||||||||||| Sbjct: 91141 ctttcaaactccccctcaac 91160
>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence Length = 182356 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ctttcaaactccccctcaac 272 |||||||||||||||||||| Sbjct: 143711 ctttcaaactccccctcaac 143692 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,714,909 Number of Sequences: 3902068 Number of extensions: 5714909 Number of successful extensions: 102961 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102818 Number of HSP's gapped (non-prelim): 143 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)