ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21i14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC011276.12| Homo sapiens chromosome , clone RP11-13J17, comp... 44 0.39
2gb|AC116913.6| Homo sapiens chromosome 15, clone CTD-3185P2, com... 44 0.39
3gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12 44 0.39
4ref|NM_102094.2| Arabidopsis thaliana COX6B (CYTOCHROME C OXIDAS... 42 1.6
5ref|XM_483734.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
6gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosom... 42 1.6
7gb|AY096696.1| Arabidopsis thaliana putative cytochrome c oxidas... 42 1.6
8gb|AY063997.1| Arabidopsis thaliana putative cytochrome c oxidas... 42 1.6
9gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosom... 42 1.6
10gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 42 1.6
11ref|XM_392490.2| PREDICTED: Apis mellifera similar to apolipopho... 42 1.6
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
13gb|AY086483.1| Arabidopsis thaliana clone 25361 mRNA, complete s... 42 1.6
14dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16dbj|AK104837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
17dbj|AK068463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
18dbj|AB035444.1| Arabidopsis thaliana mRNA for subunit 6b of cyto... 42 1.6
19gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete... 40 6.1
20gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosom... 40 6.1
21gb|AC161345.4| Mus musculus chromosome 5, clone RP23-189N6, comp... 40 6.1
22gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosom... 40 6.1
23gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosom... 40 6.1
24emb|AL683873.14| Mouse DNA sequence from clone RP23-119G22 on ch... 40 6.1
25emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 i... 40 6.1
26ref|XM_689939.1| PREDICTED: Danio rerio similar to Tripartite mo... 40 6.1
27gb|AC111120.12| Mus musculus chromosome 7, clone RP23-225M4, com... 40 6.1
28gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, ... 40 6.1
29gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer... 40 6.1
30gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 40 6.1
31emb|Y14754.2|MMSTOPEX1 Mus musculus partial stop gene, exon 1 an... 40 6.1
32gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, com... 40 6.1
33gb|BC050000.1| Mus musculus cDNA clone IMAGE:6466318 40 6.1
34emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chro... 40 6.1 
>gb|AC011276.12| Homo sapiens chromosome , clone RP11-13J17, complete sequence
          Length = 98967

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 113   aaaagaaaagtacacaagagacccaaggga 142
             |||| ||||| |||||||||||||||||||
Sbjct: 22402 aaaaaaaaagaacacaagagacccaaggga 22431
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>gb|AC116913.6| Homo sapiens chromosome 15, clone CTD-3185P2, complete sequence
          Length = 152561

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 113  aaaagaaaagtacacaagagacccaaggga 142
            |||| ||||| |||||||||||||||||||
Sbjct: 8683 aaaaaaaaagaacacaagagacccaaggga 8654
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>gb|AF077407.1|F9D12 Arabidopsis thaliana BAC F9D12
          Length = 112253

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 391    tctctttcacttcaacaggctt 412
              ||||||||||||||||||||||
Sbjct: 103839 tctctttcacttcaacaggctt 103860
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>ref|NM_102094.2| Arabidopsis thaliana COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c
           oxidase AT1G22450 (COX6B) mRNA, complete cds
          Length = 1069

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 ctctttcacttcaacaggctt 412
           |||||||||||||||||||||
Sbjct: 238 ctctttcacttcaacaggctt 218
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>ref|XM_483734.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2650

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 22   ggcttgcacaaaaactgcagc 42
            |||||||||||||||||||||
Sbjct: 2445 ggcttgcacaaaaactgcagc 2425
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>gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosome 7, complete sequence
          Length = 157795

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 123   tacacaagagacccaagggaggagg 147
             ||||||||||||||||| |||||||
Sbjct: 69728 tacacaagagacccaagtgaggagg 69704
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>gb|AY096696.1| Arabidopsis thaliana putative cytochrome c oxidase subunit
           (At1g22450) mRNA, complete cds
          Length = 607

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 ctctttcacttcaacaggctt 412
           |||||||||||||||||||||
Sbjct: 105 ctctttcacttcaacaggctt 85
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>gb|AY063997.1| Arabidopsis thaliana putative cytochrome c oxidase subunit
           (At1g22450) mRNA, complete cds
          Length = 900

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 ctctttcacttcaacaggctt 412
           |||||||||||||||||||||
Sbjct: 238 ctctttcacttcaacaggctt 218
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>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence
          Length = 212484

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 123   tacacaagagacccaagggaggagg 147
             ||||||||||||||||| |||||||
Sbjct: 12095 tacacaagagacccaagtgaggagg 12119
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>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 392   ctctttcacttcaacaggctt 412
             |||||||||||||||||||||
Sbjct: 82022 ctctttcacttcaacaggctt 82042
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>ref|XM_392490.2| PREDICTED: Apis mellifera similar to apolipophorin precursor protein
            (LOC408961), mRNA
          Length = 9894

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   tactgcccaccgaggaattaa 77
            |||||||||||||||||||||
Sbjct: 7550 tactgcccaccgaggaattaa 7570
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 22       ggcttgcacaaaaactgcagc 42
                |||||||||||||||||||||
Sbjct: 27817996 ggcttgcacaaaaactgcagc 27818016
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>gb|AY086483.1| Arabidopsis thaliana clone 25361 mRNA, complete sequence
          Length = 874

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 ctctttcacttcaacaggctt 412
           |||||||||||||||||||||
Sbjct: 179 ctctttcacttcaacaggctt 159
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>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0439B07
          Length = 89475

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    ggcttgcacaaaaactgcagc 42
             |||||||||||||||||||||
Sbjct: 72453 ggcttgcacaaaaactgcagc 72473
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    ggcttgcacaaaaactgcagc 42
             |||||||||||||||||||||
Sbjct: 26074 ggcttgcacaaaaactgcagc 26094
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>dbj|AK104837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D12, full
            insert sequence
          Length = 1345

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 22   ggcttgcacaaaaactgcagc 42
            |||||||||||||||||||||
Sbjct: 1140 ggcttgcacaaaaactgcagc 1120
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>dbj|AK068463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153A10, full
            insert sequence
          Length = 2650

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 22   ggcttgcacaaaaactgcagc 42
            |||||||||||||||||||||
Sbjct: 2445 ggcttgcacaaaaactgcagc 2425
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>dbj|AB035444.1| Arabidopsis thaliana mRNA for subunit 6b of cytochrome c oxidase,
           complete cds
          Length = 843

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 392 ctctttcacttcaacaggctt 412
           |||||||||||||||||||||
Sbjct: 133 ctctttcacttcaacaggctt 113
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>gb|AC150555.1| Drosophila melanogaster clone BACR26G12, complete sequence
          Length = 164461

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 76922 ttaataaagatattaaacgcaaaa 76945



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 73547 ttaataaagatattaaacgcaaaa 73570



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 70172 ttaataaagatattaaacgcaaaa 70195
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>gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosome 13, complete sequence
          Length = 187401

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    agctttctgatgaggaagca 347
              ||||||||||||||||||||
Sbjct: 112185 agctttctgatgaggaagca 112166
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>gb|AC161345.4| Mus musculus chromosome 5, clone RP23-189N6, complete sequence
          Length = 177864

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   ttcaacaggcttggcagcaa 420
             ||||||||||||||||||||
Sbjct: 24909 ttcaacaggcttggcagcaa 24928
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>gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosome 18, complete
             sequence
          Length = 216041

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tccatggttggcaaagggca 205
             ||||||||||||||||||||
Sbjct: 83915 tccatggttggcaaagggca 83896
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>gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosome 5, complete sequence
          Length = 203685

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    ttcaacaggcttggcagcaa 420
              ||||||||||||||||||||
Sbjct: 177498 ttcaacaggcttggcagcaa 177517
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>emb|AL683873.14| Mouse DNA sequence from clone RP23-119G22 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 104602

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 397   tcacttcaacaggcttggcagcaa 420
             |||| |||||||||||||||||||
Sbjct: 95639 tcacatcaacaggcttggcagcaa 95662
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>emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 in linkage group 7
             Contains the gene for a novel protein similar to
             vertebrate suppression of tumorigenicity 5 (ST5), a novel
             gene, the gene for a novel protein similar to vertebrate
             RAS-like estrogen-regulated growth-inhibitor (RERG) and
             the gene for a novel protein similar to vertebrate
             serine/threonine kinase 33 (STK33), complete sequence
          Length = 201768

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   aacaggcttggcagcaacag 423
             ||||||||||||||||||||
Sbjct: 93270 aacaggcttggcagcaacag 93251
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>ref|XM_689939.1| PREDICTED: Danio rerio similar to Tripartite motif protein 66
            (LOC566660), mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 404  aacaggcttggcagcaacag 423
            ||||||||||||||||||||
Sbjct: 3289 aacaggcttggcagcaacag 3308
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>gb|AC111120.12| Mus musculus chromosome 7, clone RP23-225M4, complete sequence
          Length = 151727

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aagagacccaagggaggagg 147
             ||||||||||||||||||||
Sbjct: 28171 aagagacccaagggaggagg 28190
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>gb|AC007299.18|AC007299 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR07D23,
              complete sequence
          Length = 176610

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     ttaataacgatattaaacgcaaaa 97
              ||||||| ||||||||||||||||
Sbjct: 106439 ttaataaagatattaaacgcaaaa 106416



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     ttaataacgatattaaacgcaaaa 97
              ||||||| ||||||||||||||||
Sbjct: 103070 ttaataaagatattaaacgcaaaa 103047



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 99695 ttaataaagatattaaacgcaaaa 99672
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>gb|AC153849.8| Mus musculus  BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205220

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    ttcaacaggcttggcagcaa 420
              ||||||||||||||||||||
Sbjct: 132296 ttcaacaggcttggcagcaa 132277
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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
             sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 46640 ttaataaagatattaaacgcaaaa 46617



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 43265 ttaataaagatattaaacgcaaaa 43242



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    ttaataacgatattaaacgcaaaa 97
             ||||||| ||||||||||||||||
Sbjct: 39890 ttaataaagatattaaacgcaaaa 39867
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>emb|Y14754.2|MMSTOPEX1 Mus musculus partial stop gene, exon 1 and joined CDS
          Length = 7140

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  aagagacccaagggaggagg 147
            ||||||||||||||||||||
Sbjct: 2274 aagagacccaagggaggagg 2255
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>gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, complete sequence
          Length = 167144

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   aagagacccaagggaggagg 147
             ||||||||||||||||||||
Sbjct: 32721 aagagacccaagggaggagg 32702
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>gb|BC050000.1| Mus musculus cDNA clone IMAGE:6466318
          Length = 1474

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 aagagacccaagggaggagg 147
           ||||||||||||||||||||
Sbjct: 121 aagagacccaagggaggagg 140
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>emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chromosome 15, complete
              sequence
          Length = 221087

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    tcaacaggcttggcagcaac 421
              ||||||||||||||||||||
Sbjct: 214885 tcaacaggcttggcagcaac 214866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,737,722
Number of Sequences: 3902068
Number of extensions: 3737722
Number of successful extensions: 69004
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68926
Number of HSP's gapped (non-prelim): 78
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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