ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTB_STRPU (Q27287) Metallothionein-B (MTB) 32 2.1
2PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 31 4.6
3PEPX_STRA3 (Q8E3H8) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 31 4.6
4NCKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1 (Na(+)... 30 7.8
5MTA_STRPU (P04734) Metallothionein-A (MTA) 30 7.8

>MTB_STRPU (Q27287) Metallothionein-B (MTB)|
          Length = 65

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -1

Query: 295 CKYGSECGCLSGCCVVFCIVGRPVTDG*V--PCLVVLIGYCLH*CRCSTFPSCRDG 134
           CK G+EC C    C   C +G+   DG     C       C   C C +  SC +G
Sbjct: 9   CKEGNECACTGQDC---CTIGKCCKDGTCCGKCSNAACKTCADGCTCGSGCSCTEG 61



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>PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 761

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -3

Query: 581 NGRVAGYGASPNHSYDFHSQASSGVASRGLSDGTYEYSRRVFGSVLNDVSRRADRQPVPY 402
           NG V   G  P    D  ++ +    SR L  G Y  +   + ++LN+ S+  DRQ   Y
Sbjct: 383 NGLVCSPGGYPGEDLDVLTELTY---SRNLLAGDYIKNNDCYQALLNEQSKAIDRQSGDY 439

Query: 401 PSY*H 387
             Y H
Sbjct: 440 NQYWH 444



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>PEPX_STRA3 (Q8E3H8) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 761

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -3

Query: 581 NGRVAGYGASPNHSYDFHSQASSGVASRGLSDGTYEYSRRVFGSVLNDVSRRADRQPVPY 402
           NG V   G  P    D  ++ +    SR L  G Y  +   + ++LN+ S+  DRQ   Y
Sbjct: 383 NGLVCSPGGYPGEDLDVLTELTY---SRNLLAGDYIKNNDCYQALLNEQSKAIDRQSGDY 439

Query: 401 PSY*H 387
             Y H
Sbjct: 440 NQYWH 444



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>NCKX1_HUMAN (O60721) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1099

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 132 TPSLQLGKVLQRH*C---RQYPIRTTRHGT*PSVTGLPTMQKTTQQPDRHPHSLPYLHAC 302
           TP+++    +Q H C   +  P   T     PS+T     ++ +  P   P SLP LH  
Sbjct: 380 TPTVRAKLTMQVHHCVVVKPTPAMLTTPS--PSLTTALLPEELSPSPSVLPPSLPDLHP- 436

Query: 303 NGRYPDD--TTEGLRQQWL 353
            G YP D  + E  RQ W+
Sbjct: 437 KGEYPPDLFSVEERRQGWV 455



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>MTA_STRPU (P04734) Metallothionein-A (MTA)|
          Length = 64

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = -1

Query: 295 CKYGSECGCLSGCCVVFCIVGRPVTDG*VPCLVVLIG---YCLH*CRCSTFPSCRDG 134
           CK G EC C    C   C  G    DG   C  +       C + C+C +  SC +G
Sbjct: 9   CKEGKECACFGQDC---CKTGECCKDG--TCCGICTNAACKCANGCKCGSGCSCTEG 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,345,962
Number of Sequences: 219361
Number of extensions: 2086481
Number of successful extensions: 4840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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