>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1)
          Length = 1050

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 297 CSGSXAPRGR--PWPAVRCGRSPPVP 368
           CS S +P GR  P+ + RCG S P+P
Sbjct: 408 CSSSPSPSGRAGPFSSSRCGASVPIP 433

>TXD11_HUMAN (Q6PKC3) Thioredoxin domain-containing protein 11 (EF-hand-binding|
           protein 1)
          Length = 985

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 88  KLVFLVSLSPELENVYVHRHRHTVFVMYEDISSMYFRSAAGW-LE*KEAVIKIIRSHDG 261
           KLV LV       +VY+HRH +T  V   ++ +    +   W LE +E + + +R H G
Sbjct: 309 KLVSLVHSG----SVYLHRHFNTSLVFPREVLNYTAENICKWALENQETLFRWLRPHGG 363

>YQT1_CAEEL (Q09313) Hypothetical protein F25B5.1|
          Length = 923

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +1

Query: 25   KTACFTMHIRLSLFVYSLFAHKLVF---LVSLSPELENVYVHRHRHTVF--VMYEDISSM 189
            KT+C T      LF++SL AH +V    LV+ S   ++ ++  H H++   + +E +S  
Sbjct: 836  KTSCGTR-----LFIHSLTAHHIVIHTVLVTASKIEQHDFIVAHEHSMSQPIGFEFVSYK 890

Query: 190  YF 195
            YF
Sbjct: 891  YF 892

>SOX1_HUMAN (O00570) SOX-1 protein|
          Length = 387

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -1

Query: 367 GTGGLRPQRTAGHGRPRGA*DPLHEHVQRRGRQRLHRH 254
           G GG  P RT  H  P       H H      Q +HR+
Sbjct: 218 GAGGAHPHRTPAHPHPH------HPHAHPHNPQPMHRY 249

>DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4646

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 23   EKRRASLCISDFRSLYIRCSHTSSSSWYRFLP 118
            EK+  +   SD R  ++R  HT++S+W   +P
Sbjct: 4361 EKKTRTDSTSDGRPAWMRTLHTTASNWLHLIP 4392

>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 94  VFLVSLSPELENVYVHRHRHTVFVMYEDISSMYFRSAAGWLE*KEAVIKIIRSH 255
           +F+V    ELE +    +        +D  S+Y+R   GWL  + A I+ +R +
Sbjct: 335 IFVVDSEDELEKL----NTENALAFRKDQKSLYYRDTVGWLPIQIAPIQQMRQN 384

>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = -1

Query: 367 GTGGLRPQRTAGHGRPRGA*D---PLHEHVQRRGRQRLHR 257
           G+GG RP    GHG P G      P H     RG    HR
Sbjct: 842 GSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPHEHR 881

>DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4644

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 23   EKRRASLCISDFRSLYIRCSHTSSSSWYRFLP 118
            EK+  +   SD R  ++R  HT++S+W   +P
Sbjct: 4359 EKKARTDSTSDGRPAWMRTLHTTASNWLHLIP 4390


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,951,253
Number of Sequences: 219361
Number of extensions: 937273
Number of successful extensions: 2486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2483
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)